Other tools (for pocket detection, like fpocket, but they all give you the
volume of the pockets found as well) are -
KVFinder (as pyKVFinder it’s easy to use as a Python module) -
https://pypi.org/project/pyKVFinder/
ghecom - get started here - https://pdbj.org/ghecom/download_src.html
<https://pdbj.org/ghecom/download_src.html>
Harry
> On 12 Dec 2025, at 11:52, Natalie Tatum
> <[email protected]> wrote:
>
> Hi Armando,
>
> Tools such as fpocket (https://github.com/Discngine/fpocket
> <https://github.com/Discngine/fpocket>) can do this with relative ease. There
> is a web version: https://durrantlab.pitt.edu/fpocketweb/
> <https://durrantlab.pitt.edu/fpocketweb/>
>
> All the best,
>
> Natalie
>
> Dr. Natalie J. Tatum (she/her)
> Senior Research Associate, Newcastle Drug Discovery
> Lead Academic in Structural Computational Chemistry, CRH-TI
> Cancer Research Horizons Newcastle
> Translational and Clinical Research Institute, Newcastle University
>
>
> On Fri, 12 Dec 2025 at 07:53, Armando Albert
> <[email protected]
> <mailto:[email protected]>> wrote:
> Dear all,
> How can I measure the volume of a cavity? What if it is connected to the
> solvent?
> Armando
>
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