Use the new version of the tool at the following address https://cfold.bme.uic.edu/castpfold/
and you will receive the results by email. Best J. On Mon, Jul 27, 2026 at 11:44 AM Guillaume Gaullier < [email protected]> wrote: > If you use ChimeraX, you can run KVFinder directly from the menu "Tools / > Structure Analysis / Find Cavities" and this will get you an interactive > visualization. Documentation: > https://www.cgl.ucsf.edu/chimerax/docs/user/tools/findcavities.html > > > Cheers, > > > Guillaume > ------------------------------ > *From:* CCP4 bulletin board <[email protected]> on behalf of Xavier > Brazzolotto <[email protected]> > *Sent:* Friday, July 24, 2026 8:28:56 PM > *To:* [email protected] > *Subject:* Re: [ccp4bb] Protein cavity volume calculation > > The web server KVFinder does the job I want and is quite user-friendly > > Thank you all for your advices > > Xavier > > Le 24 juil. 2026 à 19:59, Jeffrey Bonanno <[email protected]> > a écrit : > > We have used fpocket > > Jeffrey B. Bonanno, Ph.D. > Department of Biochemistry > Albert Einstein College of Medicine > 1300 Morris Park Avenue > Bronx, NY 10461 > off. 718-430-2452 fax. 718-430-8565 > email [email protected] > > *From:* CCP4 bulletin board <[email protected]> *On Behalf Of *Xavier > Brazzolotto > *Sent:* Friday, July 24, 2026 1:57 PM > *To:* [email protected] > *Subject:* [ccp4bb] Protein cavity volume calculation > > *CAUTION: This email comes from an external source; the attachments and/or > links may compromise our secure environment. Do not open or click on > suspicious emails. Please click on the “Report Message” button on the top > right of the Outlook dashboard to report any suspicious emails.* > Sorry for the bit off-list question, > > I would like to calculate a cavity volume using CASTp 3.0, but the server ( > http://sts.bioe.uic.edu/castp/calculation.html) doesn’t seem to respond. > > Is the calculation service down permanently, or is there any other > alternative? > > Xavier > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > VARNING: Klicka inte på länkar och öppna inte bilagor om du inte känner > igen avsändaren och vet att innehållet är säkert. > CAUTION: Do not click on links or open attachments unless you recognise > the sender and know the content is safe. > > > > > > > > > > > När du har kontakt med oss på Uppsala universitet med e-post så innebär > det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör > det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ > > E-mailing Uppsala University means that we will process your personal > data. For more information on how this is performed, please read here: > http://www.uu.se/en/about-uu/data-protection-policy > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
