here's another one: On Monday 12 December 2005 15:50, Egon Willighagen wrote: > == The new CDK-Taverna release == > > Now that 1.3.1 is release, I will hurry with a new CDK-Taverna release. I > wanted to release it two weeks ago already, but there are two annoying bugs > in CDK right now: > > 1. 2D layout is broken (NullPointerException)
Stefan fixed that (thanx!). > 2. 3D model building messes up atom and bond IDs, and therefore the CML > intermediate results Still exists, but working on debugging that. > I hope to fix these soon. > > Mind that the next release will require Java 1.5, because the much improved > CML support in CDK uses a Java 1.5 depending library. I compiled CDK-Taverna against the latest CDK-CVS and that actually compiled except for one issue, which is fixed in CDK-Taverna CVS now. But, when running things with Taverna 1.3.1 there are more problems: 1. The Jmol.jar that comes with Taverna contains CDK classes. You need to remove that jar from the lib/ dir. (Or, unjar the jar, delete the CDK IO classes, and rejar it again. That might work too.) 2. The new CMLWriter does not support ChemFile's yet, and CDK-Taverna expects this. This is a critical bug, but easy to fix. I don't, however, expect to make this release before Christmas. Egon -- Egon Willighagen http://chem-bla-ics.blogspot.com/ ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click _______________________________________________ Cdk-user mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/cdk-user
