Hi all.

I found that everytime I use smiles containing the '[s+]' item
the aromaticy detector gives a nullpointer exception.

For example:

IAtomContainer atomContainer;
String SMILES="[s+]1c2c(nc3c1cccc3)cccc2";
atomContainer = sp.parseSmiles(SMILES);
CDKHueckelAromaticityDetector.detectAromaticity(ac);

do you know why?

thanks a lot

-- 
Gianfranco Frau
CRS4 - Bioinformatics
Phone +39 070 9250 438
Loc. Pixina Manna Edificio 1 Pula 09010 (CA), Italy
http://www.bioinformatica.crs4.org
msn contact: [EMAIL PROTECTED]


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