Messages by Date
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2010/11/21
Re: [Cdk-user] CDK Developer
Egon Willighagen
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2010/11/21
Re: [Cdk-user] CDK Developer
Egon Willighagen
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2010/11/16
[Cdk-user] PAPER: A tree-based method for the rapid screening of chemical fingerprints
Thomas G. Kristensen
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2010/11/15
[Cdk-user] Please send an short announcement to this list of you published about/around/using/... the CDK
Egon Willighagen
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2010/11/12
[Cdk-user] How is stereo info stored in CDK object after parsing InChI or SMILES?
Nick Vandewiele
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2010/11/09
Re: [Cdk-user] InChI parsing
Nina Jeliazkova
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2010/11/09
[Cdk-user] InChI parsing
Nina Jeliazkova
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2010/10/31
[Cdk-user] new planet software for Planet CDK
Egon Willighagen
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2010/10/26
Re: [Cdk-user] substract substructure
Tobias Girschick
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2010/10/26
Re: [Cdk-user] substract substructure
Rajarshi Guha
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2010/10/26
Re: [Cdk-user] substract substructure
Tobias Girschick
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2010/10/26
Re: [Cdk-user] Cdk-user Digest, Vol 53, Issue 21
Syed Asad Rahman
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2010/10/26
Re: [Cdk-user] substract substructure
Tobias Girschick
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2010/10/26
Re: [Cdk-user] substract substructure
Rajarshi Guha
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2010/10/26
Re: [Cdk-user] substract substructure
Tobias Girschick
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2010/10/26
[Cdk-user] substract substructure
Tobias Girschick
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2010/10/19
[Cdk-user] New file releases
Mark Rijnbeek
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2010/10/18
Re: [Cdk-user] [Cdk-devel] Problems with IteratingMDLReader
Egon Willighagen
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2010/10/18
Re: [Cdk-user] [Cdk-devel] Problems with IteratingMDLReader
Nina Jeliazkova
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2010/10/18
[Cdk-user] Rendering issues
Nina Jeliazkova
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2010/10/16
Re: [Cdk-user] a time out for CDK patch reviewing?
Egon Willighagen
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2010/10/16
Re: [Cdk-user] a time out for CDK patch reviewing?
Rajarshi Guha
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2010/10/16
[Cdk-user] a time out for CDK patch reviewing?
Egon Willighagen
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2010/10/16
Re: [Cdk-user] [Cdk-devel] Problems with IteratingMDLReader
Nina Jeliazkova
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2010/10/16
Re: [Cdk-user] [Cdk-devel] Problems with IteratingMDLReader
Egon Willighagen
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2010/10/16
Re: [Cdk-user] [Cdk-devel] Problems with IteratingMDLReader
Nina Jeliazkova
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2010/10/16
Re: [Cdk-user] [Cdk-devel] Problems with IteratingMDLReader
Egon Willighagen
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2010/10/16
Re: [Cdk-user] Problems with IteratingMDLReader
Nina Jeliazkova
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2010/10/15
Re: [Cdk-user] Problems with IteratingMDLReader
Tobias Girschick
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2010/10/15
[Cdk-user] Problems with IteratingMDLReader
Tobias Girschick
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2010/10/09
Re: [Cdk-user] cdk version
Villu Ruusmann
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2010/10/08
[Cdk-user] cdk version
Rajarshi Guha
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2010/10/07
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/10/06
Re: [Cdk-user] check whether a bond is in a ring
Egon Willighagen
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] check whether a bond is in a ring
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
gilleain torrance
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] check whether a bond is in a ring
Egon Willighagen
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2010/10/06
[Cdk-user] check whether a bond is in a ring
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/10/06
Re: [Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/10/06
[Cdk-user] valency of atoms question
Nick Vandewiele
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2010/10/05
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/10/04
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/10/04
Re: [Cdk-user] CDK fingerprints
Rajarshi Guha
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2010/10/04
Re: [Cdk-user] CDK fingerprints
Rajarshi Guha
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2010/10/04
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/10/04
Re: [Cdk-user] CDK fingerprints
Rajarshi Guha
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2010/10/04
[Cdk-user] representing variable attachment points?
Jules Kerssemakers
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2010/10/04
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/10/01
Re: [Cdk-user] SMILES / SMARTS question
Loren Lenzen
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2010/10/01
Re: [Cdk-user] SMILES / SMARTS question
Rajarshi Guha
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2010/10/01
Re: [Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/10/01
Re: [Cdk-user] SMILES / SMARTS question
Jules Kerssemakers
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2010/10/01
Re: [Cdk-user] Murcko Framework / aromaticity
Egon Willighagen
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2010/10/01
Re: [Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/09/30
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/09/30
Re: [Cdk-user] CDK fingerprints
Egon Willighagen
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2010/09/30
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/09/30
Re: [Cdk-user] CDK fingerprints
Adel Golovin
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2010/09/30
Re: [Cdk-user] CDK fingerprints
Rajarshi Guha
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2010/09/30
Re: [Cdk-user] CDK fingerprints
Egon Willighagen
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2010/09/30
[Cdk-user] CDK fingerprints
Adel Golovin
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2010/09/30
Re: [Cdk-user] Murcko Framework / aromaticity
Rajarshi Guha
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2010/09/30
Re: [Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/09/30
Re: [Cdk-user] Murcko Framework / aromaticity
Christoph Steinbeck
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2010/09/30
Re: [Cdk-user] Murcko Framework / aromaticity
gilleain torrance
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2010/09/30
Re: [Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/09/30
[Cdk-user] Murcko Framework / aromaticity
Pascal Muller
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2010/09/29
Re: [Cdk-user] Rookie question - RCDK not working.
Rajarshi Guha
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2010/09/29
Re: [Cdk-user] Rookie question - RCDK not working.
Michael Krein
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2010/09/29
Re: [Cdk-user] Rookie question - RCDK not working.
Michael Krein
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2010/09/29
Re: [Cdk-user] Rookie question - RCDK not working.
Rajarshi Guha
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2010/09/29
Re: [Cdk-user] Rookie question - RCDK not working.
Rajarshi Guha
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2010/09/29
[Cdk-user] Rookie question - RCDK not working.
Michael Krein
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2010/09/29
Re: [Cdk-user] resonance structure generator?
gilleain torrance
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2010/09/28
Re: [Cdk-user] resonance structure generator?
Egon Willighagen
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2010/09/28
Re: [Cdk-user] resonance structure generator?
Christoph Steinbeck
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2010/09/28
[Cdk-user] resonance structure generator?
Nick Vandewiele
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2010/09/26
Re: [Cdk-user] SMILES / SMARTS question
Rajarshi Guha
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2010/09/26
Re: [Cdk-user] SMILES / SMARTS question
Egon Willighagen
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2010/09/26
[Cdk-user] CDK 10 year anniversary
Egon Willighagen
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2010/09/24
Re: [Cdk-user] SMILES / SMARTS question
Egon Willighagen
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2010/09/24
Re: [Cdk-user] SMILES / SMARTS question
Rajarshi Guha
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2010/09/24
[Cdk-user] SMILES / SMARTS question
Egon Willighagen
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2010/09/23
Re: [Cdk-user] renderImage, Smiles, Molecular Weight
Egon Willighagen
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2010/09/23
Re: [Cdk-user] renderImage, Smiles, Molecular Weight
Egon Willighagen
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2010/09/23
Re: [Cdk-user] renderImage, Smiles, Molecular Weight
Rajarshi Guha
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2010/09/23
Re: [Cdk-user] renderImage, Smiles, Molecular Weight
Rajarshi Guha
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2010/09/23
[Cdk-user] renderImage, Smiles, Molecular Weight
Özgür Demir
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2010/09/23
[Cdk-user] AtomMappingTools throws NullPointerException on valid input
Thomas G. Kristensen
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2010/09/22
[Cdk-user] Review request: CIP rules (subset)
Egon Willighagen
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2010/09/16
[Cdk-user] Who has a mol2 test file with charges) (was: Charges in mol2 files ignored?)
Egon Willighagen
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2010/09/16
Re: [Cdk-user] Charges in mol2 files ignored?
Thomas G. Kristensen
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2010/09/15
Re: [Cdk-user] Charges in mol2 files ignored?
Egon Willighagen
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2010/09/15
Re: [Cdk-user] Charges in mol2 files ignored?
Thomas G. Kristensen
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2010/09/15
Re: [Cdk-user] addAtom slow?
Egon Willighagen
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2010/09/15
[Cdk-user] CDK development release 1.3.6 available
Egon Willighagen
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2010/09/15
Re: [Cdk-user] Charges in mol2 files ignored?
Egon Willighagen
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2010/09/15
[Cdk-user] Charges in mol2 files ignored?
Thomas G. Kristensen
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2010/09/15
Re: [Cdk-user] Order of returned molecules from SMARTSQuery does not respect query
Thomas G. Kristensen
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2010/09/14
Re: [Cdk-user] Order of returned molecules from SMARTSQuery does not respect query
Rajarshi Guha
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2010/09/14
[Cdk-user] Order of returned molecules from SMARTSQuery does not respect query
Thomas G. Kristensen
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2010/09/13
[Cdk-user] addAtom slow?
Sebastian Wolf
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2010/09/12
[Cdk-user] CDK 1.2.7 released
Egon Willighagen
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2010/09/09
Re: [Cdk-user] rendering atom labels
Nina Jeliazkova
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2010/09/09
Re: [Cdk-user] ? re. rendering: atom label spacing w/implicit hydrogens
Egon Willighagen
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2010/09/09
Re: [Cdk-user] ? re. rendering: atom label spacing w/implicit hydrogens
gilleain torrance
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2010/09/09
Re: [Cdk-user] rendering atom labels
gilleain torrance
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2010/09/08
Re: [Cdk-user] Rendering molecules as images and documents via a Format String
Egon Willighagen
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2010/09/08
Re: [Cdk-user] ? re. rendering: atom label spacing w/implicit hydrogens
Egon Willighagen
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2010/09/08
[Cdk-user] rendering atom labels
Nina Jeliazkova
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2010/09/08
[Cdk-user] a new list of patches awaiting review
Egon Willighagen
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2010/08/23
Re: [Cdk-user] RFC: "Rename IAtom.getHydrogenCount to getImplicitHydrogenCount"
Jules Kerssemakers
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2010/08/23
Re: [Cdk-user] Fwd: [BlueObelisk-discuss] The Green Chain Reaction; can the Blue Obelisk help?
Jules Kerssemakers
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2010/08/17
[Cdk-user] ? re. rendering: atom label spacing w/implicit hydrogens
Russell, Ian
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2010/08/17
Re: [Cdk-user] ? re. BondDistance as rendered in aromatic rings
Egon Willighagen
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2010/08/17
Re: [Cdk-user] ? re. BondDistance as rendered in aromatic rings
Mark Rijnbeek
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2010/08/16
[Cdk-user] ? re. BondDistance as rendered in aromatic rings
Russell, Ian
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2010/08/13
[Cdk-user] Boston time...
Egon Willighagen
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2010/08/13
Re: [Cdk-user] RFC: "Rename IAtom.getHydrogenCount to getImplicitHydrogenCount"
Rajarshi Guha
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2010/08/13
[Cdk-user] RFC: "Rename IAtom.getHydrogenCount to getImplicitHydrogenCount"
Egon Willighagen
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2010/08/12
[Cdk-user] More on DeduceBondSystemTool (was: Smiles parser and explicit aromaticity)
Egon Willighagen
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2010/08/12
Re: [Cdk-user] Smiles parser and explicit aromaticity
markr
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2010/08/12
Re: [Cdk-user] Smiles parser and explicit aromaticity
Egon Willighagen
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2010/08/12
Re: [Cdk-user] Smiles parser and explicit aromaticity
Egon Willighagen
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2010/08/12
[Cdk-user] Smiles parser and explicit aromaticity
Mark Rijnbeek
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2010/08/09
Re: [Cdk-user] 2 Structures in 1 Row in SDF?
Egon Willighagen
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2010/08/08
[Cdk-user] 2 Structures in 1 Row in SDF?
Yogesh
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2010/08/08
[Cdk-user] Fwd: [BlueObelisk-discuss] The Green Chain Reaction; can the Blue Obelisk help?
Egon Willighagen
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2010/08/05
Re: [Cdk-user] StructureDiagramGenerator error?
Egon Willighagen
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2010/08/05
Re: [Cdk-user] StructureDiagramGenerator error?
Egon Willighagen
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2010/08/05
Re: [Cdk-user] StructureDiagramGenerator error?
Nick Vandewiele
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2010/08/05
Re: [Cdk-user] StructureDiagramGenerator error?
Christoph Steinbeck
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2010/08/04
Re: [Cdk-user] StructureDiagramGenerator error?
Christoph Steinbeck
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2010/08/04
Re: [Cdk-user] StructureDiagramGenerator error?
Nick Vandewiele
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2010/08/04
Re: [Cdk-user] StructureDiagramGenerator error?
Jules Kerssemakers
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2010/08/03
[Cdk-user] StructureDiagramGenerator error?
Nick Vandewiele
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2010/08/02
Re: [Cdk-user] Substructure search with SMART
Egon Willighagen
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2010/08/02
Re: [Cdk-user] Substructure search with SMART
Jules Kerssemakers
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2010/07/31
Re: [Cdk-user] why cdk 1.2.x and 1.3.x?
Egon Willighagen
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2010/07/31
[Cdk-user] why cdk 1.2.x and 1.3.x?
Nick Vandewiele
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2010/07/28
Re: [Cdk-user] Substructure search with SMART
muell
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2010/07/28
Re: [Cdk-user] Substructure search with SMART
Rajarshi Guha
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2010/07/28
[Cdk-user] Substructure search with SMART
muell
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2010/07/28
Re: [Cdk-user] Rendering molecules as images and documents via a Format String
gilleain torrance
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2010/07/28
[Cdk-user] CDK 1.2.6
Egon Willighagen
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2010/07/27
[Cdk-user] Rendering molecules as images and documents via a Format String
Mark Southern
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2010/07/26
Re: [Cdk-user] AtomContainer.atoms() returns Iterable, not Iterator?
Egon Willighagen
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2010/07/26
Re: [Cdk-user] AtomContainer.atoms() returns Iterable, not Iterator?
gilleain torrance
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2010/07/26
Re: [Cdk-user] AtomContainer.atoms() returns Iterable, not Iterator?
Rajarshi Guha
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2010/07/26
[Cdk-user] AtomContainer.atoms() returns Iterable, not Iterator?
Nick Vandewiele
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2010/07/26
Re: [Cdk-user] Chemical spreadsheet using Excel and CDK
Egon Willighagen
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2010/07/25
Re: [Cdk-user] Chemical spreadsheet using Excel and CDK
Rajarshi Guha
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2010/07/25
[Cdk-user] Chemical spreadsheet using Excel and CDK
xyz mjf
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2010/07/22
Re: [Cdk-user] CDK.version() ? (was: [Cdk-devel] mol2 reader not working)
Rajarshi Guha
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2010/07/22
Re: [Cdk-user] CDK.version() ? (was: [Cdk-devel] mol2 reader not working)
Nina Jeliazkova
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2010/07/22
Re: [Cdk-user] CDK.version() ? (was: [Cdk-devel] mol2 reader not working)
Egon Willighagen
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2010/07/22
Re: [Cdk-user] CDK.version() ? (was: [Cdk-devel] mol2 reader not working)
gilleain torrance
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2010/07/22
Re: [Cdk-user] IChemObjectReader has no "read" method?!?
Jules Kerssemakers
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2010/07/22
Re: [Cdk-user] CDK.version() ? (was: [Cdk-devel] mol2 reader not working)
Jules Kerssemakers
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2010/07/22
Re: [Cdk-user] IChemObjectReader has no "read" method?!?
Rajarshi Guha
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2010/07/22
Re: [Cdk-user] IChemObjectReader has no "read" method?!?
Rajarshi Guha
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2010/07/22
Re: [Cdk-user] IChemObjectReader has no "read" method?!?
Egon Willighagen
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2010/07/22
[Cdk-user] CDK.version() ? (was: [Cdk-devel] mol2 reader not working)
Egon Willighagen
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2010/07/22
Re: [Cdk-user] IChemObjectReader has no "read" method?!?
Egon Willighagen
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2010/07/22
[Cdk-user] IChemObjectReader has no "read" method?!?
Jules Kerssemakers
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2010/07/21
Re: [Cdk-user] Rendering in CDK
Egon Willighagen
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2010/07/21
[Cdk-user] Rendering in CDK
Timothy Mowlem
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2010/07/19
Re: [Cdk-user] Fingerprint Bit-Confusion
Rajarshi Guha
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2010/07/19
Re: [Cdk-user] Fingerprint Bit-Confusion
Volker Hähnke
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2010/07/19
Re: [Cdk-user] Fingerprint Bit-Confusion
Rajarshi Guha
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2010/07/19
Re: [Cdk-user] Fingerprint Bit-Confusion
Volker Hähnke
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2010/07/19
Re: [Cdk-user] Fingerprint Bit-Confusion
Rajarshi Guha
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2010/07/19
[Cdk-user] Fingerprint Bit-Confusion
Volker Hähnke
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2010/07/16
[Cdk-user] pending patches for CDK 1.2.6 (was: CDK 1.2.6 pending fixes for 5 regressions since 1.2.4)
Egon Willighagen
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2010/07/16
[Cdk-user] Reading PDB files with 1.3.5
Conrad Huang
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2010/07/14
Re: [Cdk-user] Query
Rajarshi Guha
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2010/07/13
Re: [Cdk-user] Query
deep_kumar
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2010/07/13
[Cdk-user] loading problem in JCP Viewer applet
remy d1
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2010/07/13
[Cdk-user] problem when following rendering tutorial: aromaticity
Jules Kerssemakers
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2010/07/13
Re: [Cdk-user] loading problem in JCP Viewer applet
remy d1
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2010/07/08
Re: [Cdk-user] Balancing Chemical Reactions?
Jules Kerssemakers
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2010/07/07
Re: [Cdk-user] Balancing Chemical Reactions?
gilleain torrance
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2010/07/07
Re: [Cdk-user] Balancing Chemical Reactions?
wateriestfire
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2010/07/07
Re: [Cdk-user] Balancing Chemical Reactions?
gilleain torrance
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2010/07/07
Re: [Cdk-user] Balancing Chemical Reactions?
wateriestfire
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2010/07/07
[Cdk-user] Balancing Chemical Reactions?
wateriestfire
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2010/06/24
Re: [Cdk-user] Activity values from Pubchem BioAssay?
Rajarshi Guha
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2010/06/24
Re: [Cdk-user] Activity values from Pubchem BioAssay?
Yogesh
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2010/06/24
Re: [Cdk-user] Activity values from Pubchem BioAssay?
Rajarshi Guha
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2010/06/24
Re: [Cdk-user] Activity values from Pubchem BioAssay?
Rajarshi Guha
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2010/06/24
[Cdk-user] Activity values from Pubchem BioAssay?
Yogesh
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2010/06/23
Re: [Cdk-user] Installation of cdk
Jules Kerssemakers
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2010/06/21
Re: [Cdk-user] Installation of cdk
Gurusaran M
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2010/06/19
Re: [Cdk-user] error with rcdk/fingerprint
Rajarshi Guha