Hi Raphael 

> i have an atomcontainer where i don't know the connectivity of the
> bonds. is there a helper class that can "automatically" add this
> connectivity information to my atomcontainer maybe based on some
> heuristics or so...?

I don't think that at the moment CDK is able to added automatically
bonds between atoms. One of the ways which could be implemented in CDK
could be by comparing distances between the atoms with a table of
average bond lengths.

Best regards,
 Miquel



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