hi,
is anybody using the ProteinProcketFinder class?
i tried to use it like:
ProteinPocketFinder ppf = new ProteinPocketFinder("file.pdb", true);
ppf.sitefinder();
but i am getting a
Exception in thread "main" java.lang.StackOverflowError
org.openscience.cdk.protein.ProteinPocketFinder.clusterPSPPocket(ProteinPocketFinder.java:423)
org.openscience.cdk.protein.ProteinPocketFinder.clusterPSPPocket(ProteinPocketFinder.java:448)
i tried it with several pdb files, but every file gives the same Error.
there is a slight possibility that the JRE is responsible for that
(there was a bug in 1.6.0_2, but this should be fixed in 1.6.0_3).
before checking the JRE - is there anybody that uses this class
successfully? and is there an error in my program snipplet? and or is
there some sample code about how to use the protein pocket finder?
thanks!
ra
-------------------------------------------------------------------------
This SF.net email is sponsored by the 2008 JavaOne(SM) Conference
Don't miss this year's exciting event. There's still time to save $100.
Use priority code J8TL2D2.
http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone
_______________________________________________
Cdk-user mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/cdk-user
