On Fri, May 29, 2009 at 12:46 AM, Egon Willighagen <egon.willigha...@gmail.com> wrote: > 2009/5/28 Om <ompan...@gmail.com>: >> (1) cannot find symbol in class >> org.openscience.cdk.io.MDLWriter.mw.setSdFields(map); > > Use the new SDFWriter.
Thanks, the usage of SDFWriter has solved my problem. >> (2) When I comment mw.setSdFields(map) line, I get the structure (no >> SD tag) printed out with following null pointer Exception >> >> Reason: null java.lang.NullPointerException >> at java.io.Reader.<init>(Reader.java:61) >> at java.io.InputStreamReader.<init>(InputStreamReader.java:55) >> at >> org.openscience.cdk.layout.TemplateHandler.loadTemplates(TemplateHandler.java:98) >> at >> org.openscience.cdk.layout.TemplateHandler.<init>(TemplateHandler.java:83) >> at >> org.openscience.cdk.layout.StructureDiagramGenerator.setMolecule(StructureDiagramGenerator.java:131) >> at >> org.openscience.cdk.layout.StructureDiagramGenerator.setMolecule(StructureDiagramGenerator.java:221) >> at Smile2Str.GetStr(csv2sdf.java:47) >> at csv2sdf.main(csv2sdf.java:102) >> >> Attached is code and data file > > That sounds like a bug. Which jar(s) are you using? > I am using cdk-1.2.0.jar with jdk1.6.0_11. > Egon Thanks om ------------------------------------------------------------------------------ Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT is a gathering of tech-side developers & brand creativity professionals. Meet the minds behind Google Creative Lab, Visual Complexity, Processing, & iPhoneDevCamp as they present alongside digital heavyweights like Barbarian Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com _______________________________________________ Cdk-user mailing list Cdk-user@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/cdk-user
