On Feb 10, 2011, at 11:42 AM, Alireza Kashani wrote:
> Hi there,
>
> I am wondering how can I change some Java option in advance via
> rCDK...
> I have do the process on a server and the routine is like running
> 'setenv JAVA_HOME /usr/opt/jrockit-R26.4.0-jdk1.5.0_06
>
> and then for instance to check the java version the following
> command ! /usr/opt/jrockit-R26.4.0-jdk1.5.0_06/bin/java-version
>
> I would be really appreciate if some one gives some tips !
>
> The error that I face right now (without changing these parameters)
> is something like :
>
> Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder",
> "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
> java.lang.NoClassDefFoundError: org/openscience/cdk/
> DefaultChemObjectBuilder
>
> and I guess thats because of Java addressing ...
This error should not be due to env settings. What version of rcdk,
rJava and R are you using? Also what command led to this error?
----------------------------------------------------
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http://www.rguha.net | http://ncgc.nih.gov
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