Which "package" did you download? 

I suggest that for now you just get the "all-in one" jar which contains whole 
cdk and all of its dependencies:

http://sourceforge.net/projects/cdk/files/cdk/1.2.7/cdk-1.2.7.jar/download



Date: Wed, 23 Feb 2011 00:34:33 +0100
From: alireza.kashanip...@gmail.com
To: egon.willigha...@gmail.com
CC: shahpriyank...@gmail.com; cdk-user@lists.sourceforge.net
Subject: Re: [Cdk-user] working on CDK

I would like to call CDK from Jython; not to mention, I just moved into CDK and 
jython, so the question could be very naive !
I exported all jar files from, cdk/dis/jar into my java classpath and tried to 
import them in jython but:


>>> import org.openscience.cdk.*;Traceback (innermost last):
  (no code object) at line 0  File "<console>", line 1  import 
org.openscience.cdk.*;


since there is not any org.openscience.cdk.* ...Most of CDK tutorials escaped 
(where does org.opensience.cdk.* is located and how should it be called in 
Jython) from this part and started from coding since seems this part should be 
obvious ! (not that much for some), so I would be appreciate if someone make 
this step a bit more clear!


BR
Alireza


On Tue, Feb 22, 2011 at 4:09 PM, Egon Willighagen <egon.willigha...@gmail.com> 
wrote:

On Tue, Feb 22, 2011 at 3:50 PM, Alireza Kashani

<alireza.kashanip...@gmail.com> wrote:

> I can't see any test folder in "src". Thats one of the thing, my "ant"

> complains when I ask for testing the library !!



Ah, right. You got the source distribution, not the source from the

repository. Sorry about that.



You can find the folder online too, at:



https://github.com/cdk/cdk/tree/master/src/test/org/openscience/cdk



Let me know if you need further pointers,



Egon



--

Dr E.L. Willighagen

Postdoctoral Researcher

Institutet för miljömedicin

Karolinska Institutet

Homepage: http://egonw.github.com/

LinkedIn: http://se.linkedin.com/in/egonw

Blog: http://chem-bla-ics.blogspot.com/

PubList: http://www.citeulike.org/user/egonw/tag/papers




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