On Thu, 29 Mar 2007, Matt wrote: > We have been working on > trying to integrate explicitly with biopax (http://www.biopax.org/ > states and generics proposal - level 2 was too limiting) in the hope > that other databases (like GO, reactome, KEGG, DIP, signalling > gateway, etc) get dragged along too. Some seem to be.
BioPAX annotatation scheme is very fragile and in practise almost unusable. The cross-ref are free forms, and as a consequence, Bob cannot read the annotation added by Alice. BioPAX developers are aware of that, and are now moving to a URI-based systems. Cf. the work of Alan Ruttenberg http://biopaxwiki.org/cgi-bin/moin.cgi/UriCvNamespaceProposalJune2006 -- Nicolas LE NOVERE, Computational Neurobiology, EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK Tel: +44(0)1223494521, Fax: +44(0)1223494468, Mob: +44(0)7833147074 http://www.ebi.ac.uk/~lenov, AIM: nlenovere, MSN: [EMAIL PROTECTED] _______________________________________________ cellml-discussion mailing list cellml-discussion@cellml.org http://www.cellml.org/mailman/listinfo/cellml-discussion
