On 6/11/07, Tommy Yu <[EMAIL PROTECTED]> wrote:
> Matt wrote:
> > I have concluded that they are now talking about the web site and not
> > keywords in general.
> >
> > My assumption was that the category field selections are not persisted
> > in the model metadata at all.
> >
>
> Actually they are.  Keywords are defined in the CellML metadata 
> specifications and are already being used in various files.  Feel free to 
> check the CellML files of the old repository and scroll down the to keyword 
> section.  An example follows.

You are talking about keywords, I was talking about these new things
Peter brought up called Categories.


>
> >From http://www.cellml.org/examples/models/beeler_reuter_model_1977.html:
>
>       <!--  Keyword(s) -->
>       <bqs:reference rdf:parseType="Resource">
>         <dc:subject rdf:parseType="Resource">
>           <bqs:subject_type>keyword</bqs:subject_type>
>           <rdf:value>
>             <rdf:Bag>
>               <rdf:li>ventricular myocyte</rdf:li>
>               <rdf:li>electrophysiological</rdf:li>
>             </rdf:Bag>
>           </rdf:value>
>         </dc:subject>
>       </bqs:reference>
>
> I do understand it may be different from the full CellML metadata 
> specification as found in 
> http://www.cellml.org/specifications/metadata/cellml_metadata_1.0#sec_bqs, 
> but all other models pretty much follow this RDF format and so I wound up 
> having to follow the above format to pick up the keyword metadata.

It's different, but says the same thing, even though the graph comes
out different.

Personally I think we should probably dump bqs; the rdf schema we
advertise is non-standard and broken.

Dublin core is not the easiest thing to follow, but at least it is
standard and used in the world, so we should at least keep that.

>
> > I would have liked some indication that the 'categories' used also end
> > up in the model keywords attributed to the model in addition to the
> > keywords supplied by the author when creating or uploading the model.
> >
>
> That is already the case, the 'categories' *are* keywords that are chosen by 
> Peter as a selectable choice in the filtering drop box for the repository 
> listing.

You need to make sure the keywords then are ordered collections so
that you can create some rule for your 'category' interpretation.

I don't like this special attention that certain keywords gets.

>
> > I would like there to be as many keywords allowed as the
> > author/uploader wants (perhaps just a lines field will do for now for
> > this). Constraining them to a single extra keyword in addition to a
> > selected category makes no sense to me.
> >
>
> In the Edit Keyword interface, any keyword of the model that matches one of 
> the 'blessed' keywords will be highlighted in the category list.  All other 
> keywords will be in the lines field editor.  Feel free to log into the site 
> (I assume you have an account) and try out the editing interface.  I do agree 
> it is currently slightly clunky, but James has no complaints with it and he 
> has already added/verified keyword for half the curated models (I think) of 
> the repository.
>
> Again, the category field is a *subset* of keywords to limit the number of 
> choices in the filtering menu and not a distinct entity.
>
> Hope this clear things up.
>
> Tommy.
>
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