Thanks Nico, I'll put that info up.
Kind regards,
James
Nicolas Rodriguez wrote:
James Lawson wrote:
James Lawson wrote:
Hi all,
We're currently doing some work on the Tools page of the website at
http://www.cellml.org/tools and I'd just like people to have a look
through the listing there and check that your tools are all there.
The listing is fairly old so I know we're missing a few. Apologies
in advance if your tool is missing, but please let us know and we'll
rectify that ASAP.
Kind regards,
James Lawson
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In particular, we don't have the CellML <-> SBML translators up
there. So if anyone could link me to them and maybe give me a short
paragraph description about them, that would be great.
The page general page about SBML converters developed at EBI is :
http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLConverters.html
Specific CellML pages:
http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLtoCellML.html
http://www.ebi.ac.uk/compneur-srv/sbml/converters/CellMLtoSBML.html
Note : The stylesheets on these pages are not entirely up-to-date with
the ones used to create the export formats of Biomodels DB, I still
have to work on some issues before updating the web site.
As for a really short description, they are translation tools, written
using XSLT.
The SBML to CellML converter is creating a CellML file using reactions
and we need to update it. Andrew is currently working on writing a new
version of it, the prototype is done but we need to correct some
issues before to use replace the XSLT version. This new version is
written in Ruby and is focusing mainly on getting the units as right
as possible and using the latest CellML specs without using reactions,
not doing anything about metadata yet. We are also planning to update
the CellML to SBML converter, probably written in Java when the new
specifications are out.
Cheers,
Nico
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begin:vcard
fn:James Lawson
n:Lawson;James
org:Auckland Bioengineering Institute;CellML Model Repository Curator, CellML Team
adr:;;University of Auckland;;;;New Zealand
email;internet:[email protected]
title:James Lawson
url:http://www.cellml.org
version:2.1
end:vcard
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