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********************************************************************************** 4th INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY AlCoB 2017 Aveiro, Portugal June 5-6, 2017 Organized by: Center for Research & Development in Mathematics and Applications (CIDMA) Institute of Electronics and Informatics Engineering of Aveiro (IEETA) University of Aveiro Research Group on Mathematical Linguistics (GRLMC) Rovira i Virgili University http://grammars.grlmc.com/AlCoB2017/ ********************************************************************************** PROGRAM Monday, June 5 09:00 - 09:30 Registration 09:30 - 09:40 Opening 09:40 - 10:30 Michael Biehl: Biomedical Applications of Prototype Based Classifiers and Relevance Learning - Invited lecture 10:30 - 11:00 Coffee break 11:00 - 11:50 Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali and Raffaella Rizzi: Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext Alessio Conte, Roberto Grossi, Andrea Marino, Lorenzo Tattini and Luca Versari: A Fast Algorithm for Large Common Connected Induced Subgraphs 11:50 - 12:05 Break 12:05 - 12:55 Javlon E. Isomurodov, Alexander A. Loboda and Alexey A. Sergushichev: Ranking Vertices for Active Module Recovery Problem John L. Pfaltz: Computational Processes that Appear to Model Human Memory 12:55 - 14:25 Lunch 14:25 - 15:15 Philip J. Gerrish and Nick Hengartner: Inferring the Distribution of Fitness Effects (DFE) of Newly-arising Mutations Using Samples Taken from Evolving Populations in Real Time Jesper Jansson, Ramesh Rajaby and Wing-Kin Sung: An Efficient Algorithm for the Rooted Triplet Distance between Galled Trees 15:15 - 15:30 Break and Group photo 15:30 - 16:20 Benedict Paten: Describing the Local Structure of Sequence Graphs - Invited lecture 16:20 - 16:35 Break 16:35 - 18:05 Poster presentations Martin Ayling and Richard Leggett. MetaCortex: Assembling Variation in Metagenomics Gregory Farrant, Hoebeke Mark, Frédéric Partensky, Gwendoline Andrès, Erwan Corre and Laurence Garczarek. WiseScaffolder: An Algorithm for the Semi-automatic Scaffolding of Next Generation Sequencing Data Daniel Figueiredo and Eugénio Rocha. sDL: A Prover for Hybrid Systems César González, Mariano Pérez-Martínez, Juan M. Orduña, Javier Chaves-Martinez and Ana Barbara Garcia-Garcia. On the Use of Bit Arrays in the Detection of DNA Regions with Methylated Cytosines Morteza Hosseini, Diogo Pratas and Armando J. Pinho. Quantifying Inverted Repeats in DNA Sequences Haneen Najjar, Nagam Khoury and Alexander Bolshoy. Quasi-omnipresent N-grams in M Prokaryotic Genomes John Santerre, James Davis, Fangfang Xia and Rick Stevens. Machine Learning for the Phenotype to Genotype Problem Antonio J. Tallón-Ballesteros and María Rodríguez-Romero. Multilayer Perceptron Based on Hyperbolic Tangent Hidden Nodes. An Experimental Study Antonio J. Tallón-Ballesteros, Luis Rus-Pegalajar, María Rodríguez-Romero and Jonathan E. Benavides-Vallejo. Ranking-based Feature Selection in Microarray Problems 18:15 - 19:15 Touristic visit --- Tuesday, June 6 09:00 - 09:50 Marie-France Sagot: Algorithmically Exploring and Exploiting Interspecific Interactions - Invited lecture 09:50 - 10:20 Coffee break 10:20 - 11:10 Alex Ozdemir, Michael Sheely, Daniel Bork, Ricson Cheng, Reyna Hulett, Jean Sung, Jincheng Wang and Ran Libeskind-Hadas: Clustering the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model T.M. Rezwanul Islam and Ian McQuillan: CSA-X: Modularized Constrained Multiple Sequence Alignment 11:10 - 11:25 Break 11:25 - 12:15 Ozan Kahramanogullari: Quantifying Information Flow in Chemical Reaction Networks Gabriel H.G. Silva, Edans F.O. Sandes, George Teodoro and Alba C.M A. Melo: Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands 12:15 - 12:25 Closing 12:25 - Lunch
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