The one thing I'm aware of holding on to is a filtered file-seq: 
(def the-files (filter #(s/ends-with? (.getName %) ".xml" ) (rest (file-seq 
(io/file dw-path)))))
There are 7,000+ files; but I'm assuming the elements there are just 
file-references and shouldn't take much space.

The rest of the process is a transducer sequence:
(def requirement-seq (sequence 
                         (comp
                           (map xml-zip-from-file)
                           (remove degree-complete?)
                           (map student-and-requirements))
                         the-files))

Those functions are admittedly space inefficient (lots of work with 
zippers); but are pure.  What comes out the other end is a sequence of 
Clojure maps.  Could holding on to the file references prevent all that 
processing effluvia from being collected?  

The original files add up to 1.3 gigs altogether.  I'd expect the gleaned 
data to be significantly smaller; but I'd better check into how close 
that's getting to the default heap-size.

Best,
Nathan

On Tuesday, August 8, 2017 at 1:20:21 AM UTC-7, Peter Hull wrote:
>
>
> On Tuesday, 8 August 2017 06:20:56 UTC+1, Nathan Smutz wrote:
>
>> Does this message sometimes present because the non-garbage data is 
>> getting too big?
>>
> Yes, it's when most of your heap is non-garbage, so the GC has to keep 
> running but doesn't succeed in freeing much memory each time.
> See 
> https://docs.oracle.com/javase/8/docs/technotes/guides/troubleshoot/memleaks002.html
>  
> <https://www.google.com/url?q=https%3A%2F%2Fdocs.oracle.com%2Fjavase%2F8%2Fdocs%2Ftechnotes%2Fguides%2Ftroubleshoot%2Fmemleaks002.html&sa=D&sntz=1&usg=AFQjCNG_3-bT-oubFsBYZ7opNG51ndT1jQ>
>  
> You can increases the heap but that might only defer the problem.
>
> As you process all your files, are you holding on to references to objects 
> that you don't need any more?
>

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