With the luxury of commenting on complex software sight-unseen... best of all, JavaFX... and you mention an uberjar, which grants opportunity to vent baseless suspicions about class-loading and compilation differences... could it be that the MediaPlayer is being instantiated *twice* in the uberjar version of the program? The first instance of the MediaPlayer lasts only a few milliseconds (during which it starts playing), then it is supplanted by the second instance, whereupon instance No.1 becomes eligible for garbage collection. When someone presses 'M' it's the second MediaPlayer that plays.
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