Hi,
I'm experiencing troubles with cmake 3.6.2 and FindHDF5.cmake module in
Debian/Testing.
I'm trying to build med-fichier and gmsh for instance.
The main CMakeList.txt contains:
find_package(HDF5 COMPONENTS C)
MESSAGE("HDF5_C_INCLUDE_DIR=${HDF5_C_INCLUDE_DIR}")
MESSAGE("HDF5_CXX_INCLUDE_DIR=${HDF5_CXX_INCLUDE_DIR}")
MESSAGE("HDF5_INCLUDE_DIR=${HDF5_INCLUDE_DIR}")
MESSAGE("HDF5_INCLUDE_DIRS=${HDF5_INCLUDE_DIRS}")
MESSAGE("HDF5_LIBRARIES=${HDF5_LIBRARIES}")
MESSAGE("HDF5_C_LIBRARIES=${HDF5_C_LIBRARIES}")
For those two using something like cmake .. -DHDF5_PREFER_PARALLEL:BOOL=ON to
force the use of the mpi version
I end up with error like that:
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS
HDF5_HL_LIBRARIES)
HDF5_C_INCLUDE_DIR=HDF5_C_INCLUDE_DIR-NOTFOUND
HDF5_CXX_INCLUDE_DIR=HDF5_CXX_INCLUDE_DIR-NOTFOUND
HDF5_INCLUDE_DIR=
HDF5_INCLUDE_DIRS=HDF5_C_INCLUDE_DIR-NOTFOUND;HDF5_CXX_INCLUDE_DIR-NOTFOUND
HDF5_LIBRARIES=/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;HDF5_hdf5_LIBRARY-NOTFOUND;HDF5_hdf5_cpp_LIBRARY-NOTFOUND;HDF5_hdf5_LIBRARY-NOTFOUND
HDF5_C_LIBRARIES=/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;HDF5_hdf5_LIBRARY-NOTFOUND
-- HDF5 not found
whereas hdf5 is installed!!
I also tried to see what happens in FindHDF5.cmake by printing some additionnal
messages:
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
HDF5_C_INCLUDE_DIRS = /usr/include/hdf5/openmpi;/usr/include/hdf5/openmpi
HDF5_C_DEFINITIONS
=-D_LARGEFILE64_SOURCE;-D_LARGEFILE_SOURCE;-D_FORTIFY_SOURCE=2;-D_LARGEFILE64_SOURCE;-D_LARGEFILE_SOURCE;-D_FORTIFY_SOURCE=2
HDF5_C_LIBRARY_DIRS = /usr/lib/x86_64-linux-gnu/hdf5/openmpi
HDF5_C_LIBRARY_NAMES = hdf5;sz;z;dl;m
HDF5_C_HL_LIBRARY_NAMES = hdf5_hl
HDF5_C_HL_LIBRARIES = /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5_hl.so
HDF5_C_IS_PARALLEL=TRUE
HDF5_IS_PARALLEL=FALSE
CMake Warning at /usr/share/cmake-3.6/Modules/FindHDF5.cmake:613 (message):
HDF5 found for language C is parallel but previously found language is not
parallel.
Call Stack (most recent call first):
CMakeLists.txt:853 (find_package)
It seems to me that HDF5_IS_PARALLEL is never set before...
Is there a proper new way to find hdf5 with cmake?
What is the problem with my actual way of doing it?
Thanks for any help
Best
Christophe TROPHIME
Research Engineer
CNRS - LNCMI
25, rue des Martyrs
BP 166
38042 GRENOBLE Cedex 9
FRANCE
Tel : +33 (0)4 76 88 90 02
Fax : +33 (0) 4 76 88 10 01
Office U 19
M@il : [email protected]
--
Powered by www.kitware.com
Please keep messages on-topic and check the CMake FAQ at:
http://www.cmake.org/Wiki/CMake_FAQ
Kitware offers various services to support the CMake community. For more
information on each offering, please visit:
CMake Support: http://cmake.org/cmake/help/support.html
CMake Consulting: http://cmake.org/cmake/help/consulting.html
CMake Training Courses: http://cmake.org/cmake/help/training.html
Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html
Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/cmake
