http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaParser.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaParser.java new file mode 100644 index 0000000..4fffdcb --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaParser.java @@ -0,0 +1,388 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mopta; + + +import java_cup.runtime.lr_parser; +import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser; + +import javax.swing.*; +import java.io.FileReader; +import java.util.ArrayList; +import java.util.HashMap; + + +public class MOptaParser extends java_cup.runtime.lr_parser implements GridChemQueueParser { + + /** + * Constructor which uses a file reader. + */ + public MOptaParser(final FileReader fileReader) { + super(new MOptaLexer(fileReader)); + } + + + /** + * Production table. + */ + protected static final short _production_table[][] = + lr_parser.unpackFromStrings(new String[]{ + "\000\010\000\002\003\005\000\002\002\004\000\002\004" + + "\003\000\002\005\004\000\002\005\003\000\002\010\002" + + "\000\002\006\015\000\002\007\003"}); + /** + * Parse-action table. + */ + protected static final short[][] _action_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\025\000\004\004\005\001\002\000\004\011\012\001" + + "\002\000\004\011\uffff\001\002\000\004\002\007\001\002" + + "\000\004\002\000\001\002\000\006\005\026\011\012\001" + + "\002\000\006\005\ufffd\011\ufffd\001\002\000\004\016\ufffc" + + "\001\002\000\004\016\015\001\002\000\004\013\016\001" + + "\002\000\004\013\ufffa\001\002\000\004\014\017\001\002" + + "\000\004\015\020\001\002\000\004\017\021\001\002\000" + + "\004\020\022\001\002\000\004\021\023\001\002\000\004" + + "\022\024\001\002\000\004\023\025\001\002\000\006\005" + + "\ufffb\011\ufffb\001\002\000\004\002\001\001\002\000\006" + + "\005\ufffe\011\ufffe\001\002"}); + /** + * <code>reduce_goto</code> table. + */ + protected static final short[][] _reduce_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\025\000\006\003\005\004\003\001\001\000\006\005" + + "\007\006\010\001\001\000\002\001\001\000\002\001\001" + + "\000\002\001\001\000\004\006\026\001\001\000\002\001" + + "\001\000\004\010\012\001\001\000\004\007\013\001\001" + + "\000\002\001\001\000\002\001\001\000\002\001\001\000" + + "\002\001\001\000\002\001\001\000\002\001\001\000\002" + + "\001\001\000\002\001\001\000\002\001\001\000\002\001" + + "\001\000\002\001\001\000\002\001\001"}); + /** + * Instance of action encapsulation class. + */ + protected CUP$parser$actions action_obj; + //Each string is of the format + //energy and iteraction + private ArrayList<String> result = new ArrayList<String>(); + private String tempStr = ""; + + /** + * Default constructor. + */ + public MOptaParser() { + super(); + } + + /** + * Constructor which sets the default scanner. + */ + public MOptaParser(java_cup.runtime.Scanner s) { + super(s); + } + + /** + * Access to production table. + */ + public short[][] production_table() { + return _production_table; + } + + /** + * Access to parse-action table. + */ + public short[][] action_table() { + return _action_table; + } + + /** + * Access to <code>reduce_goto</code> table. + */ + public short[][] reduce_table() { + return _reduce_table; + } + + public void addToResult(String value) { + result.add(value); + } + + + public ArrayList<String> getResult() { + return result; + } + + public String getTempStr() { + return tempStr; + } + + public void setTempStr(String s) { + this.tempStr = s; + } + + + /*Adding the parsed data to the hash map */ + @Override + public HashMap<String, String> getParsedData() throws Exception { + parse(); + HashMap<String,String> results= new HashMap<String,String>(); + int energyCount=0; + int iterationCount=0; + for(int i=0;i<result.size();i++){ + String singleString = result.get(i); + String[] temp= singleString.split(" "); + if(temp.length>1){ + String keyString= temp[0]; + String dataString=temp[1]; + if(keyString.equalsIgnoreCase("ENERGY")){ + results.put("MoptaParser_ENERGY_"+energyCount,dataString); + energyCount++; + }else if(keyString.equalsIgnoreCase("ITERATION")){ + results.put("MoptaParser_ITERATION_"+iterationCount,dataString); + iterationCount++; + } + + } + + } + return results; + } + + /** + * Action encapsulation object initializer. + */ + protected void init_actions() { + action_obj = new CUP$parser$actions(this); + } + + /** + * Invoke a user supplied parse action. + */ + public java_cup.runtime.Symbol do_action( + int act_num, + java_cup.runtime.lr_parser parser, + java.util.Stack stack, + int top) + throws java.lang.Exception { + /* call code in generated class */ + return action_obj.CUP$parser$do_action(act_num, parser, stack, top); + } + + /** + * Indicates start state. + */ + public int start_state() { + return 0; + } + + /** + * Indicates start production. + */ + public int start_production() { + return 1; + } + + /** + * <code>EOF</code> Symbol index. + */ + public int EOF_sym() { + return 0; + } + + /** + * <code>error</code> Symbol index. + */ + public int error_sym() { + return 1; + } + + +} + +/** + * Cup generated class to encapsulate user supplied action code. + */ +class CUP$parser$actions { + + + private static final String tableLabel = "SCF Intermediate Results:"; + //__________________________________ + public static boolean DEBUG = true; + private static JTable table; +// private static String cycle = "0"; + private final MOptaParser MOptaParser; + + /** + * Constructor + */ + CUP$parser$actions(MOptaParser MOptaParser) { + this.MOptaParser = MOptaParser; + } + +/* public static void main(String[] args) throws IOException { + File temp = new File("temporary"); + boolean append = true; + try{ + FileWriter temp1 = new FileWriter(temp, append); + PrintWriter temp2 = new PrintWriter(temp1);} + + catch (FileNotFoundException e) { + System.out.println("no file, dude!"); + } */ +// } + + public static JTable getTable() { + return table; + } + + public static String getTableLabel() { + return tableLabel; + } + + /** + * Method with the actual generated action code. + */ + public final java_cup.runtime.Symbol CUP$parser$do_action( + int CUP$parser$act_num, + java_cup.runtime.lr_parser CUP$parser$parser, + java.util.Stack CUP$parser$stack, + int CUP$parser$top) + throws java.lang.Exception { + /* Symbol object for return from actions */ + java_cup.runtime.Symbol CUP$parser$result; + + /* select the action based on the action number */ + switch (CUP$parser$act_num) { + /*. . . . . . . . . . . . . . . . . . . .*/ + case 7: // en ::= ENERGY + { + Object RESULT = null; + int eleft = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).left; + int eright = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right; + Float e = (Float) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:gscfa:scfcycle: ENERGY " + e); + MOptaParser.addToResult("ENERGY "+e); +// temp2.println(e); +// parseSCF.putField("iteration "+cycle, "energy", e); + + CUP$parser$result = new java_cup.runtime.Symbol(5/*en*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 6: // scfcycle ::= INTCycle NT$0 en FLOAT1 FLOAT2 FLOAT3 FLOAT4 FLOAT5 FLOAT6 FLOAT7 FLOAT8 + { + Object RESULT = null; + // propagate RESULT from NT$0 + if (((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 9)).value != null) + RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 9)).value; + int cleft = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 10)).left; + int cright = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 10)).right; + Integer c = (Integer) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 10)).value; + + CUP$parser$result = new java_cup.runtime.Symbol(4/*scfcycle*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 10)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 5: // NT$0 ::= + { + Object RESULT = null; + int cleft = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).left; + int cright = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right; + Integer c = (Integer) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:gscfa:scfcycle: ITERATION " + c); + MOptaParser.addToResult("ITERATION "+c); +// temp2.print(c); +// temp2.print(" "); +// cycle = c; + +// parseSCF.putField("iteration "+cycle, cycle); + + CUP$parser$result = new java_cup.runtime.Symbol(6/*NT$0*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 4: // scfpat ::= scfcycle + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 3: // scfpat ::= scfpat scfcycle + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gscfa: in scfpat"); + CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 1)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 2: // scfintro ::= FOUNDITER + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gscfa: found start of SCF Iteration"); + CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 1: // $START ::= startpt EOF + { + Object RESULT = null; + int start_valleft = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 1)).left; + int start_valright = ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 1)).right; + Object start_val = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 1)).value; + RESULT = start_val; + CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 1)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + /* ACCEPT */ + CUP$parser$parser.done_parsing(); + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 0: // startpt ::= scfintro scfpat SCFDONE + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gscfa: end of parse tree "); + table = new JTable(); + +// table = parseSCF.getTable(); + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 2)).left, ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top - 0)).right, RESULT); + } + return CUP$parser$result; + + /* . . . . . .*/ + default: + throw new Exception( + "Invalid action number found in internal parse table"); + + } + } +} +
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaSym.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaSym.java new file mode 100644 index 0000000..664d448 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaSym.java @@ -0,0 +1,51 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mopta; +//---------------------------------------------------- +// The following code was generated by CUP v0.10k +// Fri Sep 12 00:11:41 IST 2014 +//---------------------------------------------------- + +/** + * CUP generated class containing symbol constants. + */ +public class MOptaSym { + /* terminals */ + public static final int FLOAT5 = 14; + public static final int FLOAT4 = 13; + public static final int FLOAT3 = 11; + public static final int FLOAT2 = 10; + public static final int FLOAT1 = 9; + public static final int INTCycle = 7; + public static final int INT3 = 6; + public static final int FLOAT = 8; + public static final int INT2 = 5; + public static final int INT1 = 4; + public static final int EOF = 0; + public static final int FOUNDITER = 2; + public static final int error = 1; + public static final int SCFDONE = 3; + public static final int ENERGY = 12; + public static final int FLOAT8 = 17; + public static final int FLOAT7 = 16; + public static final int FLOAT6 = 15; +} + http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aLexer.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aLexer.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aLexer.java new file mode 100644 index 0000000..54c0221 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aLexer.java @@ -0,0 +1,681 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mp2to5a;/* The following code was generated by JFlex 1.4.3 on 9/14/14 11:25 AM */ + +/* MP2 to MP5 Keywords + Last Update: 12/31/2000 + http://www.gaussian.com/00000456.htm +*/ + +import java_cup.runtime.Symbol; +import org.apache.airavata.datacat.parsers.gridchem.Settings; + + +/** + * This class is a scanner generated by + * <a href="http://www.jflex.de/";>JFlex</a> 1.4.3 + * on 9/14/14 11:25 AM from the specification file + * <tt>mp2to5a.flex</tt> + */ +public class MP2to5aLexer implements java_cup.runtime.Scanner { + + /** This character denotes the end of file */ + public static final int YYEOF = -1; + + /** initial size of the lookahead buffer */ + private static final int ZZ_BUFFERSIZE = 16384; + + /** lexical states */ + public static final int IGNOREALL = 4; + public static final int FLOATVAL = 2; + public static final int YYINITIAL = 0; + + /** + * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l + * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l + * at the beginning of a line + * l is of the form l = 2*k, k a non negative integer + */ + private static final int ZZ_LEXSTATE[] = { + 0, 0, 1, 1, 2, 2 + }; + + /** + * Translates characters to character classes + */ + private static final char [] ZZ_CMAP = { + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 6, 7, 0, 2, 0, 2, 3, 0, + 1, 1, 1, 1, 10, 15, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 11, 4, 0, 0, 0, 0, 0, 0, 0, 8, 0, 0, + 9, 12, 0, 13, 14, 16, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 4, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + + /** + * Translates DFA states to action switch labels. + */ + private static final int [] ZZ_ACTION = zzUnpackAction(); + + private static final String ZZ_ACTION_PACKED_0 = + "\3\0\5\1\3\0\1\2\1\0\1\3\3\0\1\4"+ + "\1\2\5\0\1\5\2\0\1\6\1\0\1\7"; + + private static int [] zzUnpackAction() { + int [] result = new int[30]; + int offset = 0; + offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackAction(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + do result[j++] = value; while (--count > 0); + } + return j; + } + + + /** + * Translates a state to a row index in the transition table + */ + private static final int [] ZZ_ROWMAP = zzUnpackRowMap(); + + private static final String ZZ_ROWMAP_PACKED_0 = + "\0\0\0\21\0\42\0\63\0\104\0\125\0\146\0\167"+ + "\0\210\0\231\0\146\0\252\0\273\0\63\0\314\0\335"+ + "\0\356\0\63\0\377\0\377\0\u0110\0\u0121\0\u0132\0\u0143"+ + "\0\63\0\u0154\0\u0165\0\63\0\u0176\0\63"; + + private static int [] zzUnpackRowMap() { + int [] result = new int[30]; + int offset = 0; + offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackRowMap(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int high = packed.charAt(i++) << 16; + result[j++] = high | packed.charAt(i++); + } + return j; + } + + /** + * The transition table of the DFA + */ + private static final int [] ZZ_TRANS = zzUnpackTrans(); + + private static final String ZZ_TRANS_PACKED_0 = + "\10\4\1\5\7\4\1\6\1\4\1\7\1\10\2\4"+ + "\1\10\4\4\1\7\4\4\1\7\22\4\32\0\1\11"+ + "\17\0\1\12\11\0\1\13\1\0\1\14\6\0\1\13"+ + "\4\0\1\13\2\0\1\13\10\0\1\13\4\0\1\13"+ + "\13\0\1\15\4\0\1\16\12\0\1\17\10\0\1\14"+ + "\2\0\2\20\4\0\1\14\1\20\3\0\1\14\7\0"+ + "\1\21\31\0\1\22\2\0\1\23\1\24\2\0\1\24"+ + "\4\0\1\23\4\0\1\23\14\0\1\25\1\0\1\26"+ + "\4\0\1\23\10\0\1\23\4\0\1\23\15\0\1\27"+ + "\17\0\1\30\14\0\1\31\25\0\1\32\1\0\1\33"+ + "\11\0\1\34\25\0\1\35\13\0\1\36\11\0"; + + private static int [] zzUnpackTrans() { + int [] result = new int[391]; + int offset = 0; + offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackTrans(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + value--; + do result[j++] = value; while (--count > 0); + } + return j; + } + + + /* error codes */ + private static final int ZZ_UNKNOWN_ERROR = 0; + private static final int ZZ_NO_MATCH = 1; + private static final int ZZ_PUSHBACK_2BIG = 2; + + /* error messages for the codes above */ + private static final String ZZ_ERROR_MSG[] = { + "Unkown internal scanner error", + "Error: could not match input", + "Error: pushback value was too large" + }; + + /** + * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code> + */ + private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute(); + + private static final String ZZ_ATTRIBUTE_PACKED_0 = + "\3\0\1\11\4\1\3\0\1\1\1\0\1\11\3\0"+ + "\1\11\1\1\5\0\1\11\2\0\1\11\1\0\1\11"; + + private static int [] zzUnpackAttribute() { + int [] result = new int[30]; + int offset = 0; + offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackAttribute(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + do result[j++] = value; while (--count > 0); + } + return j; + } + + /** the input device */ + private java.io.Reader zzReader; + + /** the current state of the DFA */ + private int zzState; + + /** the current lexical state */ + private int zzLexicalState = YYINITIAL; + + /** this buffer contains the current text to be matched and is + the source of the yytext() string */ + private char zzBuffer[] = new char[ZZ_BUFFERSIZE]; + + /** the textposition at the last accepting state */ + private int zzMarkedPos; + + /** the current text position in the buffer */ + private int zzCurrentPos; + + /** startRead marks the beginning of the yytext() string in the buffer */ + private int zzStartRead; + + /** endRead marks the last character in the buffer, that has been read + from input */ + private int zzEndRead; + + /** number of newlines encountered up to the start of the matched text */ + private int yyline; + + /** the number of characters up to the start of the matched text */ + private int yychar; + + /** + * the number of characters from the last newline up to the start of the + * matched text + */ + private int yycolumn; + + /** + * zzAtBOL == true <=> the scanner is currently at the beginning of a line + */ + private boolean zzAtBOL = true; + + /** zzAtEOF == true <=> the scanner is at the EOF */ + private boolean zzAtEOF; + + /** denotes if the user-EOF-code has already been executed */ + private boolean zzEOFDone; + + /* user code: */ + public static boolean DEBUG = false; + + + /** + * Creates a new scanner + * There is also a java.io.InputStream version of this constructor. + * + * @param in the java.io.Reader to read input from. + */ + public MP2to5aLexer(java.io.Reader in) { + this.zzReader = in; + } + + /** + * Creates a new scanner. + * There is also java.io.Reader version of this constructor. + * + * @param in the java.io.Inputstream to read input from. + */ + public MP2to5aLexer(java.io.InputStream in) { + this(new java.io.InputStreamReader(in)); + } + + + /** + * Refills the input buffer. + * + * @return <code>false</code>, iff there was new input. + * + * @exception java.io.IOException if any I/O-Error occurs + */ + private boolean zzRefill() throws java.io.IOException { + + /* first: make room (if you can) */ + if (zzStartRead > 0) { + System.arraycopy(zzBuffer, zzStartRead, + zzBuffer, 0, + zzEndRead-zzStartRead); + + /* translate stored positions */ + zzEndRead-= zzStartRead; + zzCurrentPos-= zzStartRead; + zzMarkedPos-= zzStartRead; + zzStartRead = 0; + } + + /* is the buffer big enough? */ + if (zzCurrentPos >= zzBuffer.length) { + /* if not: blow it up */ + char newBuffer[] = new char[zzCurrentPos*2]; + System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length); + zzBuffer = newBuffer; + } + + /* finally: fill the buffer with new input */ + int numRead = zzReader.read(zzBuffer, zzEndRead, + zzBuffer.length-zzEndRead); + + if (numRead > 0) { + zzEndRead+= numRead; + return false; + } + // unlikely but not impossible: read 0 characters, but not at end of stream + if (numRead == 0) { + int c = zzReader.read(); + if (c == -1) { + return true; + } else { + zzBuffer[zzEndRead++] = (char) c; + return false; + } + } + + // numRead < 0 + return true; + } + + + /** + * Closes the input stream. + */ + public final void yyclose() throws java.io.IOException { + zzAtEOF = true; /* indicate end of file */ + zzEndRead = zzStartRead; /* invalidate buffer */ + + if (zzReader != null) + zzReader.close(); + } + + + /** + * Resets the scanner to read from a new input stream. + * Does not close the old reader. + * + * All internal variables are reset, the old input stream + * <b>cannot</b> be reused (internal buffer is discarded and lost). + * Lexical state is set to <tt>ZZ_INITIAL</tt>. + * + * @param reader the new input stream + */ + public final void yyreset(java.io.Reader reader) { + zzReader = reader; + zzAtBOL = true; + zzAtEOF = false; + zzEOFDone = false; + zzEndRead = zzStartRead = 0; + zzCurrentPos = zzMarkedPos = 0; + yyline = yychar = yycolumn = 0; + zzLexicalState = YYINITIAL; + } + + + /** + * Returns the current lexical state. + */ + public final int yystate() { + return zzLexicalState; + } + + + /** + * Enters a new lexical state + * + * @param newState the new lexical state + */ + public final void yybegin(int newState) { + zzLexicalState = newState; + } + + + /** + * Returns the text matched by the current regular expression. + */ + public final String yytext() { + return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead ); + } + + + /** + * Returns the character at position <tt>pos</tt> from the + * matched text. + * + * It is equivalent to yytext().charAt(pos), but faster + * + * @param pos the position of the character to fetch. + * A value from 0 to yylength()-1. + * + * @return the character at position pos + */ + public final char yycharat(int pos) { + return zzBuffer[zzStartRead+pos]; + } + + + /** + * Returns the length of the matched text region. + */ + public final int yylength() { + return zzMarkedPos-zzStartRead; + } + + + /** + * Reports an error that occured while scanning. + * + * In a wellformed scanner (no or only correct usage of + * yypushback(int) and a match-all fallback rule) this method + * will only be called with things that "Can't Possibly Happen". + * If this method is called, something is seriously wrong + * (e.g. a JFlex bug producing a faulty scanner etc.). + * + * Usual syntax/scanner level error handling should be done + * in error fallback rules. + * + * @param errorCode the code of the errormessage to display + */ + private void zzScanError(int errorCode) { + String message; + try { + message = ZZ_ERROR_MSG[errorCode]; + } + catch (ArrayIndexOutOfBoundsException e) { + message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR]; + } + + throw new Error(message); + } + + + /** + * Pushes the specified amount of characters back into the input stream. + * + * They will be read again by then next call of the scanning method + * + * @param number the number of characters to be read again. + * This number must not be greater than yylength()! + */ + public void yypushback(int number) { + if ( number > yylength() ) + zzScanError(ZZ_PUSHBACK_2BIG); + + zzMarkedPos -= number; + } + + + /** + * Contains user EOF-code, which will be executed exactly once, + * when the end of file is reached + */ + private void zzDoEOF() throws java.io.IOException { + if (!zzEOFDone) { + zzEOFDone = true; + yyclose(); + } + } + + + /** + * Resumes scanning until the next regular expression is matched, + * the end of input is encountered or an I/O-Error occurs. + * + * @return the next token + * @exception java.io.IOException if any I/O-Error occurs + */ + public java_cup.runtime.Symbol next_token() throws java.io.IOException { + int zzInput; + int zzAction; + + // cached fields: + int zzCurrentPosL; + int zzMarkedPosL; + int zzEndReadL = zzEndRead; + char [] zzBufferL = zzBuffer; + char [] zzCMapL = ZZ_CMAP; + + int [] zzTransL = ZZ_TRANS; + int [] zzRowMapL = ZZ_ROWMAP; + int [] zzAttrL = ZZ_ATTRIBUTE; + + while (true) { + zzMarkedPosL = zzMarkedPos; + + zzAction = -1; + + zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL; + + zzState = ZZ_LEXSTATE[zzLexicalState]; + + + zzForAction: { + while (true) { + + if (zzCurrentPosL < zzEndReadL) + zzInput = zzBufferL[zzCurrentPosL++]; + else if (zzAtEOF) { + zzInput = YYEOF; + break zzForAction; + } + else { + // store back cached positions + zzCurrentPos = zzCurrentPosL; + zzMarkedPos = zzMarkedPosL; + boolean eof = zzRefill(); + // get translated positions and possibly new buffer + zzCurrentPosL = zzCurrentPos; + zzMarkedPosL = zzMarkedPos; + zzBufferL = zzBuffer; + zzEndReadL = zzEndRead; + if (eof) { + zzInput = YYEOF; + break zzForAction; + } + else { + zzInput = zzBufferL[zzCurrentPosL++]; + } + } + int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ]; + if (zzNext == -1) break zzForAction; + zzState = zzNext; + + int zzAttributes = zzAttrL[zzState]; + if ( (zzAttributes & 1) == 1 ) { + zzAction = zzState; + zzMarkedPosL = zzCurrentPosL; + if ( (zzAttributes & 8) == 8 ) break zzForAction; + } + + } + } + + // store back cached position + zzMarkedPos = zzMarkedPosL; + + switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) { + case 4: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5aSym.LIM, yytext()); + } + case 8: break; + case 7: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5aSym.VAR, yytext()); + } + case 9: break; + case 2: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + yybegin(YYINITIAL); + return new Symbol(MP2to5aSym.FLOAT, yytext()); + } + case 10: break; + case 3: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5aSym.LIM, yytext()); + } + case 11: break; + case 5: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5aSym.VAR, yytext()); + } + case 12: break; + case 6: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5aSym.VAR, yytext()); + } + case 13: break; + case 1: + { + } + case 14: break; + default: + if (zzInput == YYEOF && zzStartRead == zzCurrentPos) { + zzAtEOF = true; + zzDoEOF(); + { return new java_cup.runtime.Symbol(MP2to5aSym.EOF); } + } + else { + zzScanError(ZZ_NO_MATCH); + } + } + } + } + + /** + * Converts an int token code into the name of the + * token by reflection on the cup symbol class/interface sym + * + * This code was contributed by Karl Meissner <[email protected]> + */ + private String getTokenName(int token) { + try { + java.lang.reflect.Field [] classFields = MP2to5aSym.class.getFields(); + for (int i = 0; i < classFields.length; i++) { + if (classFields[i].getInt(null) == token) { + return classFields[i].getName(); + } + } + } catch (Exception e) { + e.printStackTrace(System.err); + } + + return "UNKNOWN TOKEN"; + } + + /** + * Same as next_token but also prints the token to standard out + * for debugging. + * + * This code was contributed by Karl Meissner <[email protected]> + */ + public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException { + java_cup.runtime.Symbol s = next_token(); + System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--"); + return s; + } + + /** + * Runs the scanner on input files. + * + * This is a standalone scanner, it will print any unmatched + * text to System.out unchanged. + * + * @param argv the command line, contains the filenames to run + * the scanner on. + */ + public static void main(String argv[]) { + if (argv.length == 0) { + System.out.println("Usage : java MP2to5aLexer <inputfile>"); + } + else { + for (int i = 0; i < argv.length; i++) { + MP2to5aLexer scanner = null; + try { + scanner = new MP2to5aLexer( new java.io.FileReader(argv[i]) ); + while ( !scanner.zzAtEOF ) scanner.next_token(); + } + catch (java.io.FileNotFoundException e) { + System.out.println("File not found : \""+argv[i]+"\""); + } + catch (java.io.IOException e) { + System.out.println("IO error scanning file \""+argv[i]+"\""); + System.out.println(e); + } + catch (Exception e) { + System.out.println("Unexpected exception:"); + e.printStackTrace(); + } + } + } + } + + +} http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aParser.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aParser.java new file mode 100644 index 0000000..1ae4db3 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aParser.java @@ -0,0 +1,261 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mp2to5a; + + +import java_cup.runtime.lr_parser; +import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser; +import org.apache.airavata.datacat.parsers.gridchem.Settings; + +import java.io.FileReader; +import java.util.ArrayList; +import java.util.HashMap; + +public class MP2to5aParser extends java_cup.runtime.lr_parser implements GridChemQueueParser { + + /** Default constructor. */ + public MP2to5aParser() {super();} + + /** Constructor which sets the default scanner. */ + public MP2to5aParser(java_cup.runtime.Scanner s) {super(s);} + + /** + * Constructor which uses a file reader. + */ + public MP2to5aParser(final FileReader fileReader) { + super(new MP2to5aLexer(fileReader)); + } + + /** Production table. */ + protected static final short _production_table[][] = + lr_parser.unpackFromStrings(new String[]{ + "\000\005\000\002\003\004\000\002\002\004\000\002\003" + + "\003\000\002\004\003\000\002\004\003"}); + + /** Access to production table. */ + public short[][] production_table() {return _production_table;} + + /** Parse-action table. */ + protected static final short[][] _action_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\007\000\006\023\004\024\006\001\002\000\010\002" + + "\ufffe\023\ufffe\024\ufffe\001\002\000\010\002\uffff\023\uffff" + + "\024\uffff\001\002\000\010\002\ufffd\023\ufffd\024\ufffd\001" + + "\002\000\010\002\011\023\004\024\006\001\002\000\010" + + "\002\001\023\001\024\001\001\002\000\004\002\000\001" + + "\002"}); + + /** Access to parse-action table. */ + public short[][] action_table() {return _action_table;} + + /** <code>reduce_goto</code> table. */ + protected static final short[][] _reduce_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\007\000\006\003\006\004\004\001\001\000\002\001" + + "\001\000\002\001\001\000\002\001\001\000\004\004\007" + + "\001\001\000\002\001\001\000\002\001\001"}); + + /** Access to <code>reduce_goto</code> table. */ + public short[][] reduce_table() {return _reduce_table;} + + /** Instance of action encapsulation class. */ + protected CUP$parser$actions action_obj; + + + //Each string is of the format + //mp2SpecificOption + private ArrayList<String> result = new ArrayList<String>(); + private String tempStr = ""; + + + public ArrayList<String> getResult() { + return result; + } + + public void addToResult(String value) { + result.add(value); + } + + + public String getTempStr() { + return tempStr; + } + + public void setTempStr(String s) { + this.tempStr = s; + } + + /*Adding the parsed data to the hash map */ + @Override + public HashMap<String, String> getParsedData() throws Exception { + parse(); + HashMap<String,String> results=new HashMap<String,String>(); + int count=0; + for(int i=0;i<result.size();i++){ + String singleString= result.get(i); + String[] temp= singleString.split(" "); + if(temp.length>1){ + String keyString=temp[0]; + String dataString=temp[1]; + if(keyString.equalsIgnoreCase("SpecificOption")){ + results.put("MP2to5aParser_MP2_Specific_Option_"+count,dataString); + count++; + } + } + + } + return results; + } + + + /** Action encapsulation object initializer. */ + protected void init_actions() + { + action_obj = new CUP$parser$actions(this); + } + + /** Invoke a user supplied parse action. */ + public java_cup.runtime.Symbol do_action( + int act_num, + java_cup.runtime.lr_parser parser, + java.util.Stack stack, + int top) + throws java.lang.Exception + { + /* call code in generated class */ + return action_obj.CUP$parser$do_action(act_num, parser, stack, top); + } + + /** Indicates start state. */ + public int start_state() {return 0;} + /** Indicates start production. */ + public int start_production() {return 1;} + + /** <code>EOF</code> Symbol index. */ + public int EOF_sym() {return 0;} + + /** <code>error</code> Symbol index. */ + public int error_sym() {return 1;} + + + /** User initialization code. */ + public void user_init() throws java.lang.Exception + { + if(Settings.DEBUG) System.out.println("CUP:mp2to5a: entry"); + } + + + + ///public static boolean DEBUG = false; +} + +/** Cup generated class to encapsulate user supplied action code.*/ +class CUP$parser$actions { + private final MP2to5aParser MP2to5aParser; + + /** Constructor */ + CUP$parser$actions(MP2to5aParser MP2to5aParser) { + this.MP2to5aParser = MP2to5aParser; + } + + /** Method with the actual generated action code. */ + public final java_cup.runtime.Symbol CUP$parser$do_action( + int CUP$parser$act_num, + java_cup.runtime.lr_parser CUP$parser$parser, + java.util.Stack CUP$parser$stack, + int CUP$parser$top) + throws java.lang.Exception + { + /* Symbol object for return from actions */ + java_cup.runtime.Symbol CUP$parser$result; + + /* select the action based on the action number */ + switch (CUP$parser$act_num) + { + /*. . . . . . . . . . . . . . . . . . . .*/ + case 4: // element ::= LIM + { + Object RESULT = null; + int sleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int sright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + String s = (String)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + if(Settings.DEBUG) System.out.println("CUP:mp2to5a: MP2-Specific Option: "+s); + MP2to5aParser.addToResult("SpecificOption "+s); + // ParseMP2to5.put("Limitations to MP5: ", s); + CUP$parser$result = new java_cup.runtime.Symbol(2/*element*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 3: // element ::= VAR + { + Object RESULT = null; + int sleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int sright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + String s = (String)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + if(Settings.DEBUG) System.out.println("CUP:mp2to5a: MP2-Specific Option: "+s); + MP2to5aParser.addToResult("SpecificOption "+s); + //ParseMP2to5.put("Variations of MP4: ", s); + CUP$parser$result = new java_cup.runtime.Symbol(2/*element*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 2: // startpt ::= element + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 1: // $START ::= startpt EOF + { + Object RESULT = null; + int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left; + int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right; + Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value; + RESULT = start_val; + CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + /* ACCEPT */ + CUP$parser$parser.done_parsing(); + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 0: // startpt ::= startpt element + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /* . . . . . .*/ + default: + throw new Exception( + "Invalid action number found in internal parse table"); + + } + } +} + http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aSym.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aSym.java new file mode 100644 index 0000000..709154a --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5a/MP2to5aSym.java @@ -0,0 +1,51 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mp2to5a; +//---------------------------------------------------- +// The following code was generated by CUP v0.10k +// Sun Sep 14 11:25:52 IST 2014 +//---------------------------------------------------- + +/** CUP generated class containing symbol constants. */ +public class MP2to5aSym { + /* terminals */ + public static final int E4_SDTQ = 8; + public static final int MP2OPT = 16; + public static final int LIM = 18; + public static final int UMP4_SDQ = 11; + public static final int UMP4_SDTQ = 12; + public static final int E4_DQ = 6; + public static final int FCOPT = 13; + public static final int UMP4_DQ = 10; + public static final int E4_SDQ = 7; + public static final int E3 = 5; + public static final int E2 = 2; + public static final int FLOAT = 19; + public static final int EOF = 0; + public static final int error = 1; + public static final int MP4_T = 4; + public static final int FCOPT2 = 14; + public static final int ALGOPT = 15; + public static final int VAR = 17; + public static final int EUMP3 = 9; + public static final int EUMP2 = 3; +} + http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bLexer.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bLexer.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bLexer.java new file mode 100644 index 0000000..fa065ff --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bLexer.java @@ -0,0 +1,687 @@ +package org.apache.airavata.datacat.parsers.gridchem.mp2to5b;/* The following code was generated by JFlex 1.4.3 on 9/14/14 11:52 AM */ + +/* MP2 to MP5 Keywords + Last Update: 12/31/2000 + http://www.gaussian.com/00000456.htm +*/ + +import java_cup.runtime.Symbol; +import org.apache.airavata.datacat.parsers.gridchem.Settings; + + +/** + * This class is a scanner generated by + * <a href="http://www.jflex.de/";>JFlex</a> 1.4.3 + * on 9/14/14 11:52 AM from the specification file + * <tt>mp2to5b.flex</tt> + */ +public class MP2to5bLexer implements java_cup.runtime.Scanner { + + /** This character denotes the end of file */ + public static final int YYEOF = -1; + + /** initial size of the lookahead buffer */ + private static final int ZZ_BUFFERSIZE = 16384; + + /** lexical states */ + public static final int IGNOREALL = 4; + public static final int FLOATVAL = 2; + public static final int YYINITIAL = 0; + + /** + * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l + * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l + * at the beginning of a line + * l is of the form l = 2*k, k a non negative integer + */ + private static final int ZZ_LEXSTATE[] = { + 0, 0, 1, 1, 2, 2 + }; + + /** + * Translates characters to character classes + */ + private static final char [] ZZ_CMAP = { + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 7, 15, 4, 0, + 1, 2, 18, 2, 16, 14, 17, 2, 2, 2, 0, 0, 0, 26, 0, 0, + 0, 27, 0, 9, 5, 5, 8, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 12, 28, 0, 0, 0, 13, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 20, 0, 0, 21, 19, 0, 0, 0, 22, 0, 0, 11, 0, 23, 24, + 0, 0, 0, 0, 0, 10, 0, 25, 0, 0, 0, 0, 6, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + + /** + * Translates DFA states to action switch labels. + */ + private static final int [] ZZ_ACTION = zzUnpackAction(); + + private static final String ZZ_ACTION_PACKED_0 = + "\3\0\13\1\1\0\1\2\5\0\1\3\2\0\1\4"+ + "\1\5\7\0\1\6\3\0\1\7\1\4\4\0\1\10"+ + "\3\0\1\11\2\0\1\12"; + + private static int [] zzUnpackAction() { + int [] result = new int[51]; + int offset = 0; + offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackAction(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + do result[j++] = value; while (--count > 0); + } + return j; + } + + + /** + * Translates a state to a row index in the transition table + */ + private static final int [] ZZ_ROWMAP = zzUnpackRowMap(); + + private static final String ZZ_ROWMAP_PACKED_0 = + "\0\0\0\35\0\72\0\127\0\164\0\221\0\256\0\313"+ + "\0\350\0\u0105\0\u0122\0\u013f\0\u015c\0\u0179\0\u0196\0\127"+ + "\0\u01b3\0\u01d0\0\u01ed\0\u020a\0\u0227\0\127\0\u0244\0\u015c"+ + "\0\u0261\0\127\0\u027e\0\u029b\0\u02b8\0\u02d5\0\u02f2\0\u030f"+ + "\0\u032c\0\127\0\u0349\0\u0366\0\u0383\0\127\0\u03a0\0\u03a0"+ + "\0\u03bd\0\u03da\0\u03f7\0\127\0\u0414\0\u0431\0\u044e\0\127"+ + "\0\u046b\0\u0488\0\127"; + + private static int [] zzUnpackRowMap() { + int [] result = new int[51]; + int offset = 0; + offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackRowMap(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int high = packed.charAt(i++) << 16; + result[j++] = high | packed.charAt(i++); + } + return j; + } + + /** + * The transition table of the DFA + */ + private static final int [] ZZ_TRANS = zzUnpackTrans(); + + private static final String ZZ_TRANS_PACKED_0 = + "\1\4\1\5\6\4\1\6\1\7\2\4\1\10\1\11"+ + "\1\12\1\13\1\4\1\14\14\4\2\15\1\16\2\4"+ + "\1\16\7\4\1\15\1\16\3\15\47\4\44\0\1\17"+ + "\36\0\1\20\1\21\55\0\1\22\16\0\1\20\5\0"+ + "\1\23\37\0\1\24\15\0\1\25\46\0\1\26\22\0"+ + "\1\27\26\0\2\30\1\0\1\31\11\0\1\30\1\0"+ + "\3\30\13\0\2\30\13\0\1\30\1\0\3\30\13\0"+ + "\1\32\46\0\1\33\55\0\1\34\24\0\1\35\37\0"+ + "\1\36\6\0\1\32\15\0\1\37\37\0\1\40\13\0"+ + "\2\31\2\0\2\41\7\0\1\31\1\0\3\31\1\41"+ + "\1\0\1\41\22\0\1\42\55\0\1\43\25\0\1\44"+ + "\34\0\1\45\27\0\1\46\36\0\1\46\13\0\2\47"+ + "\1\50\2\0\1\50\7\0\1\47\1\50\3\47\23\0"+ + "\1\51\40\0\1\52\47\0\1\53\5\0\2\47\13\0"+ + "\1\47\1\0\3\47\22\0\1\54\52\0\1\55\37\0"+ + "\1\56\32\0\1\57\37\0\1\60\27\0\1\61\37\0"+ + "\1\62\35\0\1\63\3\0"; + + private static int [] zzUnpackTrans() { + int [] result = new int[1189]; + int offset = 0; + offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackTrans(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + value--; + do result[j++] = value; while (--count > 0); + } + return j; + } + + + /* error codes */ + private static final int ZZ_UNKNOWN_ERROR = 0; + private static final int ZZ_NO_MATCH = 1; + private static final int ZZ_PUSHBACK_2BIG = 2; + + /* error messages for the codes above */ + private static final String ZZ_ERROR_MSG[] = { + "Unkown internal scanner error", + "Error: could not match input", + "Error: pushback value was too large" + }; + + /** + * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code> + */ + private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute(); + + private static final String ZZ_ATTRIBUTE_PACKED_0 = + "\3\0\1\11\12\1\1\0\1\11\5\0\1\11\2\0"+ + "\1\1\1\11\7\0\1\11\3\0\1\11\1\1\4\0"+ + "\1\11\3\0\1\11\2\0\1\11"; + + private static int [] zzUnpackAttribute() { + int [] result = new int[51]; + int offset = 0; + offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackAttribute(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + do result[j++] = value; while (--count > 0); + } + return j; + } + + /** the input device */ + private java.io.Reader zzReader; + + /** the current state of the DFA */ + private int zzState; + + /** the current lexical state */ + private int zzLexicalState = YYINITIAL; + + /** this buffer contains the current text to be matched and is + the source of the yytext() string */ + private char zzBuffer[] = new char[ZZ_BUFFERSIZE]; + + /** the textposition at the last accepting state */ + private int zzMarkedPos; + + /** the current text position in the buffer */ + private int zzCurrentPos; + + /** startRead marks the beginning of the yytext() string in the buffer */ + private int zzStartRead; + + /** endRead marks the last character in the buffer, that has been read + from input */ + private int zzEndRead; + + /** number of newlines encountered up to the start of the matched text */ + private int yyline; + + /** the number of characters up to the start of the matched text */ + private int yychar; + + /** + * the number of characters from the last newline up to the start of the + * matched text + */ + private int yycolumn; + + /** + * zzAtBOL == true <=> the scanner is currently at the beginning of a line + */ + private boolean zzAtBOL = true; + + /** zzAtEOF == true <=> the scanner is at the EOF */ + private boolean zzAtEOF; + + /** denotes if the user-EOF-code has already been executed */ + private boolean zzEOFDone; + + /* user code: */ + public static boolean DEBUG = false; + + + /** + * Creates a new scanner + * There is also a java.io.InputStream version of this constructor. + * + * @param in the java.io.Reader to read input from. + */ + public MP2to5bLexer(java.io.Reader in) { + this.zzReader = in; + } + + /** + * Creates a new scanner. + * There is also java.io.Reader version of this constructor. + * + * @param in the java.io.Inputstream to read input from. + */ + public MP2to5bLexer(java.io.InputStream in) { + this(new java.io.InputStreamReader(in)); + } + + + /** + * Refills the input buffer. + * + * @return <code>false</code>, iff there was new input. + * + * @exception java.io.IOException if any I/O-Error occurs + */ + private boolean zzRefill() throws java.io.IOException { + + /* first: make room (if you can) */ + if (zzStartRead > 0) { + System.arraycopy(zzBuffer, zzStartRead, + zzBuffer, 0, + zzEndRead-zzStartRead); + + /* translate stored positions */ + zzEndRead-= zzStartRead; + zzCurrentPos-= zzStartRead; + zzMarkedPos-= zzStartRead; + zzStartRead = 0; + } + + /* is the buffer big enough? */ + if (zzCurrentPos >= zzBuffer.length) { + /* if not: blow it up */ + char newBuffer[] = new char[zzCurrentPos*2]; + System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length); + zzBuffer = newBuffer; + } + + /* finally: fill the buffer with new input */ + int numRead = zzReader.read(zzBuffer, zzEndRead, + zzBuffer.length-zzEndRead); + + if (numRead > 0) { + zzEndRead+= numRead; + return false; + } + // unlikely but not impossible: read 0 characters, but not at end of stream + if (numRead == 0) { + int c = zzReader.read(); + if (c == -1) { + return true; + } else { + zzBuffer[zzEndRead++] = (char) c; + return false; + } + } + + // numRead < 0 + return true; + } + + + /** + * Closes the input stream. + */ + public final void yyclose() throws java.io.IOException { + zzAtEOF = true; /* indicate end of file */ + zzEndRead = zzStartRead; /* invalidate buffer */ + + if (zzReader != null) + zzReader.close(); + } + + + /** + * Resets the scanner to read from a new input stream. + * Does not close the old reader. + * + * All internal variables are reset, the old input stream + * <b>cannot</b> be reused (internal buffer is discarded and lost). + * Lexical state is set to <tt>ZZ_INITIAL</tt>. + * + * @param reader the new input stream + */ + public final void yyreset(java.io.Reader reader) { + zzReader = reader; + zzAtBOL = true; + zzAtEOF = false; + zzEOFDone = false; + zzEndRead = zzStartRead = 0; + zzCurrentPos = zzMarkedPos = 0; + yyline = yychar = yycolumn = 0; + zzLexicalState = YYINITIAL; + } + + + /** + * Returns the current lexical state. + */ + public final int yystate() { + return zzLexicalState; + } + + + /** + * Enters a new lexical state + * + * @param newState the new lexical state + */ + public final void yybegin(int newState) { + zzLexicalState = newState; + } + + + /** + * Returns the text matched by the current regular expression. + */ + public final String yytext() { + return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead ); + } + + + /** + * Returns the character at position <tt>pos</tt> from the + * matched text. + * + * It is equivalent to yytext().charAt(pos), but faster + * + * @param pos the position of the character to fetch. + * A value from 0 to yylength()-1. + * + * @return the character at position pos + */ + public final char yycharat(int pos) { + return zzBuffer[zzStartRead+pos]; + } + + + /** + * Returns the length of the matched text region. + */ + public final int yylength() { + return zzMarkedPos-zzStartRead; + } + + + /** + * Reports an error that occured while scanning. + * + * In a wellformed scanner (no or only correct usage of + * yypushback(int) and a match-all fallback rule) this method + * will only be called with things that "Can't Possibly Happen". + * If this method is called, something is seriously wrong + * (e.g. a JFlex bug producing a faulty scanner etc.). + * + * Usual syntax/scanner level error handling should be done + * in error fallback rules. + * + * @param errorCode the code of the errormessage to display + */ + private void zzScanError(int errorCode) { + String message; + try { + message = ZZ_ERROR_MSG[errorCode]; + } + catch (ArrayIndexOutOfBoundsException e) { + message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR]; + } + + throw new Error(message); + } + + + /** + * Pushes the specified amount of characters back into the input stream. + * + * They will be read again by then next call of the scanning method + * + * @param number the number of characters to be read again. + * This number must not be greater than yylength()! + */ + public void yypushback(int number) { + if ( number > yylength() ) + zzScanError(ZZ_PUSHBACK_2BIG); + + zzMarkedPos -= number; + } + + + /** + * Contains user EOF-code, which will be executed exactly once, + * when the end of file is reached + */ + private void zzDoEOF() throws java.io.IOException { + if (!zzEOFDone) { + zzEOFDone = true; + yyclose(); + } + } + + + /** + * Resumes scanning until the next regular expression is matched, + * the end of input is encountered or an I/O-Error occurs. + * + * @return the next token + * @exception java.io.IOException if any I/O-Error occurs + */ + public java_cup.runtime.Symbol next_token() throws java.io.IOException { + int zzInput; + int zzAction; + + // cached fields: + int zzCurrentPosL; + int zzMarkedPosL; + int zzEndReadL = zzEndRead; + char [] zzBufferL = zzBuffer; + char [] zzCMapL = ZZ_CMAP; + + int [] zzTransL = ZZ_TRANS; + int [] zzRowMapL = ZZ_ROWMAP; + int [] zzAttrL = ZZ_ATTRIBUTE; + + while (true) { + zzMarkedPosL = zzMarkedPos; + + zzAction = -1; + + zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL; + + zzState = ZZ_LEXSTATE[zzLexicalState]; + + + zzForAction: { + while (true) { + + if (zzCurrentPosL < zzEndReadL) + zzInput = zzBufferL[zzCurrentPosL++]; + else if (zzAtEOF) { + zzInput = YYEOF; + break zzForAction; + } + else { + // store back cached positions + zzCurrentPos = zzCurrentPosL; + zzMarkedPos = zzMarkedPosL; + boolean eof = zzRefill(); + // get translated positions and possibly new buffer + zzCurrentPosL = zzCurrentPos; + zzMarkedPosL = zzMarkedPos; + zzBufferL = zzBuffer; + zzEndReadL = zzEndRead; + if (eof) { + zzInput = YYEOF; + break zzForAction; + } + else { + zzInput = zzBufferL[zzCurrentPosL++]; + } + } + int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ]; + if (zzNext == -1) break zzForAction; + zzState = zzNext; + + int zzAttributes = zzAttrL[zzState]; + if ( (zzAttributes & 1) == 1 ) { + zzAction = zzState; + zzMarkedPosL = zzCurrentPosL; + if ( (zzAttributes & 8) == 8 ) break zzForAction; + } + + } + } + + // store back cached position + zzMarkedPos = zzMarkedPosL; + + switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) { + case 4: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + yybegin(YYINITIAL); + return new Symbol(MP2to5bSym.FLOAT, yytext()); + } + case 11: break; + case 8: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT, yytext()); + } + case 12: break; + case 10: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT, yytext()); + } + case 13: break; + case 9: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT, yytext()); + } + case 14: break; + case 5: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT2, yytext()); + } + case 15: break; + case 7: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT2, yytext()); + } + case 16: break; + case 6: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT, yytext()); + } + case 17: break; + case 3: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT2, yytext()); + } + case 18: break; + case 2: + { if(Settings.DEBUG) System.out.println("JFlex:mp2to5: "+yytext()); + return new Symbol(MP2to5bSym.FCOPT, yytext()); + } + case 19: break; + case 1: + { + } + case 20: break; + default: + if (zzInput == YYEOF && zzStartRead == zzCurrentPos) { + zzAtEOF = true; + zzDoEOF(); + { return new java_cup.runtime.Symbol(MP2to5bSym.EOF); } + } + else { + zzScanError(ZZ_NO_MATCH); + } + } + } + } + + /** + * Converts an int token code into the name of the + * token by reflection on the cup symbol class/interface sym + * + * This code was contributed by Karl Meissner <[email protected]> + */ + private String getTokenName(int token) { + try { + java.lang.reflect.Field [] classFields = MP2to5bSym.class.getFields(); + for (int i = 0; i < classFields.length; i++) { + if (classFields[i].getInt(null) == token) { + return classFields[i].getName(); + } + } + } catch (Exception e) { + e.printStackTrace(System.err); + } + + return "UNKNOWN TOKEN"; + } + + /** + * Same as next_token but also prints the token to standard out + * for debugging. + * + * This code was contributed by Karl Meissner <[email protected]> + */ + public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException { + java_cup.runtime.Symbol s = next_token(); + System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--"); + return s; + } + + /** + * Runs the scanner on input files. + * + * This is a standalone scanner, it will print any unmatched + * text to System.out unchanged. + * + * @param argv the command line, contains the filenames to run + * the scanner on. + */ + public static void main(String argv[]) { + if (argv.length == 0) { + System.out.println("Usage : java MP2to5bLexer <inputfile>"); + } + else { + for (int i = 0; i < argv.length; i++) { + MP2to5bLexer scanner = null; + try { + scanner = new MP2to5bLexer( new java.io.FileReader(argv[i]) ); + while ( !scanner.zzAtEOF ) scanner.next_token(); + } + catch (java.io.FileNotFoundException e) { + System.out.println("File not found : \""+argv[i]+"\""); + } + catch (java.io.IOException e) { + System.out.println("IO error scanning file \""+argv[i]+"\""); + System.out.println(e); + } + catch (Exception e) { + System.out.println("Unexpected exception:"); + e.printStackTrace(); + } + } + } + } + + +} http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bParser.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bParser.java new file mode 100644 index 0000000..ba61f5f --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bParser.java @@ -0,0 +1,263 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mp2to5b; + + +import java_cup.runtime.lr_parser; +import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser; +import org.apache.airavata.datacat.parsers.gridchem.Settings; + +import java.io.FileReader; +import java.util.ArrayList; +import java.util.HashMap; + + +public class MP2to5bParser extends java_cup.runtime.lr_parser implements GridChemQueueParser{ + + /** Default constructor. */ + public MP2to5bParser() {super();} + + /** Constructor which sets the default scanner. */ + public MP2to5bParser(java_cup.runtime.Scanner s) {super(s);} + + /** + * Constructor which uses a file reader. + */ + public MP2to5bParser(final FileReader fileReader) { + super(new MP2to5bLexer(fileReader)); + } + + /** Production table. */ + protected static final short _production_table[][] = + lr_parser.unpackFromStrings(new String[]{ + "\000\005\000\002\003\004\000\002\002\004\000\002\003" + + "\003\000\002\004\003\000\002\004\003"}); + + /** Access to production table. */ + public short[][] production_table() {return _production_table;} + + /** Parse-action table. */ + protected static final short[][] _action_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\007\000\006\017\004\020\005\001\002\000\010\002" + + "\ufffe\017\ufffe\020\ufffe\001\002\000\010\002\ufffd\017\ufffd" + + "\020\ufffd\001\002\000\010\002\uffff\017\uffff\020\uffff\001" + + "\002\000\010\002\011\017\004\020\005\001\002\000\010" + + "\002\001\017\001\020\001\001\002\000\004\002\000\001" + + "\002"}); + + /** Access to parse-action table. */ + public short[][] action_table() {return _action_table;} + + /** <code>reduce_goto</code> table. */ + protected static final short[][] _reduce_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\007\000\006\003\006\004\005\001\001\000\002\001" + + "\001\000\002\001\001\000\002\001\001\000\004\004\007" + + "\001\001\000\002\001\001\000\002\001\001"}); + + /** Access to <code>reduce_goto</code> table. */ + public short[][] reduce_table() {return _reduce_table;} + + /** Instance of action encapsulation class. */ + protected CUP$parser$actions action_obj; + + //Each string is of the format + //mp2SpecificOption + private ArrayList<String> result = new ArrayList<String>(); + private String tempStr = ""; + + + public ArrayList<String> getResult() { + return result; + } + + + public void addToResult(String value) { + result.add(value); + } + + public String getTempStr() { + return tempStr; + } + + public void setTempStr(String s) { + this.tempStr = s; + } + + /*Adding the parsed data to the hash map */ + @Override + public HashMap<String, String> getParsedData() throws Exception { + parse(); + HashMap<String, String> results = new HashMap<String,String>(); + int j=0; + for (int i=0; i<result.size();i++){ + String resultString= result.get(i); + String[] temp=resultString.split(" "); + if(temp.length<3){ + continue; + } + String element=temp[2]+" "+temp[3]+" "+temp[4]; + if (element.equalsIgnoreCase("Frozen Core Option:")){ + j++; + String tempString= "MP2to5b_Frozen Core Option_" + j; + results.put(tempString,temp[6]); + }else{ + continue; + } + } + return results; + } + + /** Action encapsulation object initializer. */ + protected void init_actions() + { + action_obj = new CUP$parser$actions(this); + } + + /** Invoke a user supplied parse action. */ + public java_cup.runtime.Symbol do_action( + int act_num, + java_cup.runtime.lr_parser parser, + java.util.Stack stack, + int top) + throws java.lang.Exception + { + /* call code in generated class */ + return action_obj.CUP$parser$do_action(act_num, parser, stack, top); + } + + /** Indicates start state. */ + public int start_state() {return 0;} + /** Indicates start production. */ + public int start_production() {return 1;} + + /** <code>EOF</code> Symbol index. */ + public int EOF_sym() {return 0;} + + /** <code>error</code> Symbol index. */ + public int error_sym() {return 1;} + + + /** User initialization code. */ + public void user_init() throws java.lang.Exception + { + if(Settings.DEBUG) System.out.println("CUP:mp2to5b: entry"); + } + + + + ///public static boolean DEBUG = false; +} + +/** Cup generated class to encapsulate user supplied action code.*/ +class CUP$parser$actions { + private final MP2to5bParser MP2to5bParser; + + /** Constructor */ + CUP$parser$actions(MP2to5bParser MP2to5bParser) { + this.MP2to5bParser = MP2to5bParser; + } + + /** Method with the actual generated action code. */ + public final java_cup.runtime.Symbol CUP$parser$do_action( + int CUP$parser$act_num, + java_cup.runtime.lr_parser CUP$parser$parser, + java.util.Stack CUP$parser$stack, + int CUP$parser$top) + throws java.lang.Exception + { + /* Symbol object for return from actions */ + java_cup.runtime.Symbol CUP$parser$result; + + /* select the action based on the action number */ + switch (CUP$parser$act_num) + { + /*. . . . . . . . . . . . . . . . . . . .*/ + case 4: // element ::= FCOPT2 + { + Object RESULT = null; + int sleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int sright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + String s = (String)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + if(Settings.DEBUG) System.out.println("CUP:mp2to5b: Frozen Core Option: "+s); + MP2to5bParser.addToResult("CUP:mp2to5b: Frozen Core Option: "+s); + // ParseMP2to5.put("Frozen Core Option? (Check raw output) ", s); + CUP$parser$result = new java_cup.runtime.Symbol(2/*element*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 3: // element ::= FCOPT + { + Object RESULT = null; + int sleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int sright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + String s = (String)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + if(Settings.DEBUG) System.out.println("CUP:mp2to5b: Frozen Core Option: "+s); + MP2to5bParser.addToResult("CUP:mp2to5b: Frozen Core Option: "+s); + + // ParseMP2to5.put("Frozen Core Option: ", s); + CUP$parser$result = new java_cup.runtime.Symbol(2/*element*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 2: // startpt ::= element + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 1: // $START ::= startpt EOF + { + Object RESULT = null; + int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left; + int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right; + Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value; + RESULT = start_val; + CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + /* ACCEPT */ + CUP$parser$parser.done_parsing(); + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 0: // startpt ::= startpt element + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /* . . . . . .*/ + default: + throw new Exception( + "Invalid action number found in internal parse table"); + + } + } +} + http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bSym.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bSym.java new file mode 100644 index 0000000..69f1e51 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mp2to5b/MP2to5bSym.java @@ -0,0 +1,51 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.mp2to5b; +//---------------------------------------------------- +// The following code was generated by CUP v0.10k +// Sun Sep 14 11:52:08 IST 2014 +//---------------------------------------------------- + +/** CUP generated class containing symbol constants. */ +public class MP2to5bSym { + /* terminals */ + public static final int E4_SDTQ = 8; + public static final int MP2OPT = 16; + public static final int LIM = 18; + public static final int UMP4_SDQ = 11; + public static final int UMP4_SDTQ = 12; + public static final int E4_DQ = 6; + public static final int FCOPT = 13; + public static final int UMP4_DQ = 10; + public static final int E4_SDQ = 7; + public static final int E3 = 5; + public static final int E2 = 2; + public static final int FLOAT = 19; + public static final int EOF = 0; + public static final int error = 1; + public static final int MP4_T = 4; + public static final int FCOPT2 = 14; + public static final int ALGOPT = 15; + public static final int VAR = 17; + public static final int EUMP3 = 9; + public static final int EUMP2 = 3; +} +
