http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordLexer.java
----------------------------------------------------------------------
diff --git 
a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordLexer.java
 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordLexer.java
new file mode 100644
index 0000000..17c5cc4
--- /dev/null
+++ 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordLexer.java
@@ -0,0 +1,793 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements.  See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership.  The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License.  You may obtain a copy of the License at
+*
+*   http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied.  See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.mfinalcoord;/* The 
following code was generated by JFlex 1.4.3 on 9/12/14 12:00 AM */
+
+import java_cup.runtime.*;
+
+
+/**
+ * This class is a scanner generated by 
+ * <a href="http://www.jflex.de/";>JFlex</a> 1.4.3
+ * on 9/12/14 12:00 AM from the specification file
+ * <tt>mfinalcoord.flex</tt>
+ */
+public class MFinalCoordLexer implements java_cup.runtime.Scanner {
+
+  /** This character denotes the end of file */
+  public static final int YYEOF = -1;
+
+  /** initial size of the lookahead buffer */
+  private static final int ZZ_BUFFERSIZE = 16384;
+
+  /** lexical states */
+  public static final int INPUTF = 30;
+  public static final int ITER2 = 4;
+  public static final int INPUTE = 28;
+  public static final int INPUTD = 26;
+  public static final int INPUTC = 24;
+  public static final int INPUTB = 22;
+  public static final int INPUTA = 20;
+  public static final int INTVALUE = 8;
+  public static final int INPUT = 18;
+  public static final int IGNOREALL = 16;
+  public static final int ITER = 2;
+  public static final int YYINITIAL = 0;
+  public static final int FLOAT2 = 14;
+  public static final int FLOAT1 = 12;
+  public static final int FLOATVALUE = 10;
+  public static final int ITER3 = 6;
+
+  /**
+   * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l
+   * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l
+   *                  at the beginning of a line
+   * l is of the form l = 2*k, k a non negative integer
+   */
+  private static final int ZZ_LEXSTATE[] = { 
+     0,  0,  1,  1,  2,  2,  2,  2,  2,  2,  2,  2,  2,  2,  2,  2, 
+     2,  2,  3,  3,  4,  4,  5,  5,  6,  6,  7,  7,  8,  8,  9, 9
+  };
+
+  /** 
+   * Translates characters to character classes
+   */
+  private static final char [] ZZ_CMAP = {
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+    13,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  4,  0, 20,  5,  0, 
+     1,  1,  1,  1,  1,  1,  1,  1,  1,  1, 29,  0,  0,  0,  0,  0, 
+     0,  7, 33, 12, 15, 17,  6, 31, 30, 11,  3,  3, 32, 10, 16,  9, 
+     3,  3, 14, 18,  8,  3,  3,  3, 39, 40, 19,  0,  0,  0,  0,  2, 
+     0, 21,  3,  3, 34, 27,  3, 36, 37, 24,  3,  3, 35,  3, 28, 26, 
+     3,  3, 23, 38, 22,  3,  3,  3, 25,  3,  3,  0,  4,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0, 
+     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0
+  };
+
+  /** 
+   * Translates DFA states to action switch labels.
+   */
+  private static final int [] ZZ_ACTION = zzUnpackAction();
+
+  private static final String ZZ_ACTION_PACKED_0 =
+    "\12\0\6\1\1\2\2\1\2\3\11\1\25\0\1\4"+
+    "\1\5\1\6\1\7\120\0\1\10\20\0\1\11\6\0"+
+    "\1\12\6\0\1\13\25\0\1\14\45\0\1\15";
+
+  private static int [] zzUnpackAction() {
+    int [] result = new int[227];
+    int offset = 0;
+    offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result);
+    return result;
+  }
+
+  private static int zzUnpackAction(String packed, int offset, int [] result) {
+    int i = 0;       /* index in packed string  */
+    int j = offset;  /* index in unpacked array */
+    int l = packed.length();
+    while (i < l) {
+      int count = packed.charAt(i++);
+      int value = packed.charAt(i++);
+      do result[j++] = value; while (--count > 0);
+    }
+    return j;
+  }
+
+
+  /** 
+   * Translates a state to a row index in the transition table
+   */
+  private static final int [] ZZ_ROWMAP = zzUnpackRowMap();
+
+  private static final String ZZ_ROWMAP_PACKED_0 =
+    "\0\0\0\51\0\122\0\173\0\244\0\315\0\366\0\u011f"+
+    "\0\u0148\0\u0171\0\u019a\0\u01c3\0\u01ec\0\u0215\0\u023e\0\u0267"+
+    "\0\u0290\0\u0290\0\u02b9\0\u019a\0\u02e2\0\u030b\0\u0334\0\u035d"+
+    "\0\u0386\0\u03af\0\u03d8\0\u0401\0\u042a\0\u0453\0\u047c\0\u04a5"+
+    "\0\u04ce\0\u04f7\0\u0520\0\u0549\0\u030b\0\u0572\0\u035d\0\u059b"+
+    "\0\u03af\0\u05c4\0\u0401\0\u05ed\0\u0616\0\u063f\0\u0668\0\u0691"+
+    "\0\u06ba\0\u06e3\0\u070c\0\u0572\0\u059b\0\u05c4\0\u05ed\0\u0735"+
+    "\0\u075e\0\u0787\0\u07b0\0\u07d9\0\u0802\0\u082b\0\u0854\0\u087d"+
+    "\0\u08a6\0\u08cf\0\u08f8\0\u0921\0\u094a\0\u0973\0\u099c\0\u09c5"+
+    "\0\u09ee\0\u0a17\0\u0a40\0\u0a69\0\u0a92\0\u0abb\0\u0ae4\0\u0b0d"+
+    "\0\u0b36\0\u0b5f\0\u0b88\0\u0bb1\0\u0bda\0\u0c03\0\u0c2c\0\u0c55"+
+    "\0\u0c7e\0\u0ca7\0\u0cd0\0\u0cf9\0\u0d22\0\u0d4b\0\u0d74\0\u0d9d"+
+    "\0\u0dc6\0\u0def\0\u0e18\0\u0e41\0\u0e6a\0\u0e93\0\u0ebc\0\u0ee5"+
+    "\0\u0f0e\0\u0f37\0\u0f60\0\u0f89\0\u0fb2\0\u0fdb\0\u1004\0\u102d"+
+    "\0\u1056\0\u107f\0\u10a8\0\u10d1\0\u10fa\0\u1123\0\u114c\0\u1175"+
+    "\0\u119e\0\u11c7\0\u11f0\0\u1219\0\u1242\0\u126b\0\u1294\0\u12bd"+
+    "\0\u12e6\0\u130f\0\u1338\0\u1361\0\u138a\0\u13b3\0\u13dc\0\u019a"+
+    "\0\u1405\0\u142e\0\u1457\0\u1480\0\u14a9\0\u14d2\0\u14fb\0\u1524"+
+    "\0\u154d\0\u1576\0\u159f\0\u15c8\0\u15f1\0\u161a\0\u1643\0\u166c"+
+    "\0\u019a\0\u1695\0\u16be\0\u16e7\0\u1710\0\u1739\0\u1762\0\u019a"+
+    "\0\u178b\0\u17b4\0\u17dd\0\u1806\0\u182f\0\u1858\0\u019a\0\u1881"+
+    "\0\u18aa\0\u18d3\0\u18fc\0\u1925\0\u194e\0\u1977\0\u19a0\0\u19c9"+
+    "\0\u19f2\0\u1a1b\0\u1a44\0\u1a6d\0\u1a96\0\u1abf\0\u1ae8\0\u1b11"+
+    "\0\u1b3a\0\u1b63\0\u1b8c\0\u1bb5\0\u019a\0\u1bde\0\u1c07\0\u1c30"+
+    "\0\u1c59\0\u1c82\0\u1cab\0\u1cd4\0\u1cfd\0\u1d26\0\u1d4f\0\u1d78"+
+    "\0\u1da1\0\u1dca\0\u1df3\0\u1e1c\0\u1e45\0\u1e6e\0\u1e97\0\u1ec0"+
+    "\0\u1ee9\0\u1f12\0\u1f3b\0\u1f64\0\u1f8d\0\u1fb6\0\u1fdf\0\u2008"+
+    "\0\u2031\0\u205a\0\u2083\0\u20ac\0\u20d5\0\u20fe\0\u2127\0\u2150"+
+    "\0\u2179\0\u21a2\0\u019a";
+
+  private static int [] zzUnpackRowMap() {
+    int [] result = new int[227];
+    int offset = 0;
+    offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result);
+    return result;
+  }
+
+  private static int zzUnpackRowMap(String packed, int offset, int [] result) {
+    int i = 0;  /* index in packed string  */
+    int j = offset;  /* index in unpacked array */
+    int l = packed.length();
+    while (i < l) {
+      int high = packed.charAt(i++) << 16;
+      result[j++] = high | packed.charAt(i++);
+    }
+    return j;
+  }
+
+  /** 
+   * The transition table of the DFA
+   */
+  private static final int [] ZZ_TRANS = zzUnpackTrans();
+
+  private static final String ZZ_TRANS_PACKED_0 =
+    "\7\13\1\14\13\13\1\15\35\13\1\16\7\13\1\17"+
+    "\20\13\1\20\61\13\1\21\2\13\1\22\17\13\1\23"+
+    "\26\13\1\24\1\25\2\13\7\25\1\13\6\25\1\13"+
+    "\10\25\1\13\13\25\1\13\1\26\2\13\1\27\17\13"+
+    "\1\27\25\13\1\30\2\13\1\31\17\13\1\31\25\13"+
+    "\1\32\2\13\1\33\17\13\1\33\25\13\1\34\2\13"+
+    "\1\35\17\13\1\35\73\13\1\36\1\13\61\0\1\37"+
+    "\64\0\1\40\62\0\1\41\30\0\1\42\64\0\1\43"+
+    "\17\0\1\21\50\0\1\21\22\0\1\44\25\0\1\25"+
+    "\50\0\1\45\3\0\1\46\44\0\1\45\50\0\1\47"+
+    "\3\0\1\50\44\0\1\47\50\0\1\51\3\0\1\52"+
+    "\44\0\1\51\50\0\1\53\3\0\1\54\44\0\1\53"+
+    "\64\0\1\55\44\0\1\56\51\0\1\57\57\0\1\60"+
+    "\44\0\1\61\67\0\1\62\40\0\1\63\25\0\1\64"+
+    "\50\0\1\65\50\0\1\66\50\0\1\67\64\0\1\70"+
+    "\45\0\1\71\63\0\1\72\25\0\1\73\63\0\1\74"+
+    "\75\0\1\75\32\0\1\76\41\0\1\77\46\0\1\100"+
+    "\63\0\1\101\43\0\1\102\36\0\1\103\56\0\1\104"+
+    "\57\0\1\105\41\0\1\106\47\0\1\107\63\0\1\110"+
+    "\41\0\1\111\40\0\1\112\103\0\1\113\31\0\1\114"+
+    "\41\0\1\115\50\0\1\116\63\0\1\117\37\0\1\120"+
+    "\42\0\1\121\72\0\1\122\41\0\1\123\41\0\1\124"+
+    "\47\0\1\125\65\0\1\126\21\0\1\127\60\0\1\130"+
+    "\72\0\1\131\40\0\1\132\41\0\1\133\44\0\1\134"+
+    "\54\0\1\135\44\0\1\136\54\0\1\137\77\0\1\140"+
+    "\30\0\1\141\41\0\1\142\44\0\1\143\71\0\1\144"+
+    "\24\0\1\145\57\0\1\146\61\0\1\147\46\0\1\150"+
+    "\41\0\1\151\51\0\1\152\61\0\1\153\23\0\1\154"+
+    "\63\0\1\155\100\0\1\156\27\0\1\157\41\0\1\160"+
+    "\52\0\1\161\61\0\1\162\26\0\1\163\57\0\1\164"+
+    "\101\0\1\165\26\0\1\166\41\0\1\167\46\0\1\170"+
+    "\70\0\1\171\30\0\1\172\51\0\1\173\51\0\1\174"+
+    "\57\0\1\175\41\0\1\176\53\0\1\177\64\0\1\200"+
+    "\54\0\1\201\46\0\1\202\42\0\1\203\44\0\1\204"+
+    "\41\0\1\205\42\0\1\206\67\0\1\207\43\0\1\210"+
+    "\36\0\1\211\75\0\1\212\40\0\1\213\41\0\1\214"+
+    "\43\0\1\215\65\0\1\216\41\0\1\217\47\0\1\220"+
+    "\57\0\1\221\74\0\1\222\21\0\1\223\55\0\1\224"+
+    "\61\0\1\225\52\0\1\226\33\0\1\227\41\0\1\230"+
+    "\55\0\1\231\56\0\1\232\41\0\1\233\61\0\1\234"+
+    "\42\0\1\235\41\0\1\236\65\0\1\237\33\0\1\240"+
+    "\100\0\1\241\27\0\1\242\41\0\1\243\67\0\1\244"+
+    "\43\0\1\210\45\0\1\245\41\0\1\246\70\0\1\247"+
+    "\37\0\1\250\41\0\1\251\57\0\1\252\41\0\1\253"+
+    "\57\0\1\254\41\0\1\255\57\0\1\256\41\0\1\257"+
+    "\57\0\1\260\41\0\1\261\57\0\1\262\41\0\1\263"+
+    "\57\0\1\264\41\0\1\265\57\0\1\266\41\0\1\267"+
+    "\57\0\1\270\41\0\1\271\57\0\1\272\41\0\1\273"+
+    "\57\0\1\274\47\0\1\275\51\0\1\276\50\0\1\277"+
+    "\50\0\1\300\50\0\1\301\50\0\1\302\50\0\1\303"+
+    "\50\0\1\304\50\0\1\305\50\0\1\306\50\0\1\307"+
+    "\50\0\1\310\50\0\1\311\50\0\1\312\50\0\1\313"+
+    "\50\0\1\314\50\0\1\315\50\0\1\316\50\0\1\317"+
+    "\50\0\1\320\50\0\1\321\50\0\1\322\50\0\1\323"+
+    "\50\0\1\324\50\0\1\325\50\0\1\326\50\0\1\327"+
+    "\50\0\1\330\50\0\1\331\50\0\1\332\50\0\1\333"+
+    "\50\0\1\334\50\0\1\335\50\0\1\336\50\0\1\337"+
+    "\50\0\1\340\50\0\1\341\50\0\1\342\50\0\1\343"+
+    "\24\0";
+
+  private static int [] zzUnpackTrans() {
+    int [] result = new int[8651];
+    int offset = 0;
+    offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result);
+    return result;
+  }
+
+  private static int zzUnpackTrans(String packed, int offset, int [] result) {
+    int i = 0;       /* index in packed string  */
+    int j = offset;  /* index in unpacked array */
+    int l = packed.length();
+    while (i < l) {
+      int count = packed.charAt(i++);
+      int value = packed.charAt(i++);
+      value--;
+      do result[j++] = value; while (--count > 0);
+    }
+    return j;
+  }
+
+
+  /* error codes */
+  private static final int ZZ_UNKNOWN_ERROR = 0;
+  private static final int ZZ_NO_MATCH = 1;
+  private static final int ZZ_PUSHBACK_2BIG = 2;
+
+  /* error messages for the codes above */
+  private static final String ZZ_ERROR_MSG[] = {
+    "Unkown internal scanner error",
+    "Error: could not match input",
+    "Error: pushback value was too large"
+  };
+
+  /**
+   * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code>
+   */
+  private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute();
+
+  private static final String ZZ_ATTRIBUTE_PACKED_0 =
+    "\12\0\1\11\10\1\1\11\12\1\25\0\4\1\120\0"+
+    "\1\11\20\0\1\11\6\0\1\11\6\0\1\11\25\0"+
+    "\1\11\45\0\1\11";
+
+  private static int [] zzUnpackAttribute() {
+    int [] result = new int[227];
+    int offset = 0;
+    offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result);
+    return result;
+  }
+
+  private static int zzUnpackAttribute(String packed, int offset, int [] 
result) {
+    int i = 0;       /* index in packed string  */
+    int j = offset;  /* index in unpacked array */
+    int l = packed.length();
+    while (i < l) {
+      int count = packed.charAt(i++);
+      int value = packed.charAt(i++);
+      do result[j++] = value; while (--count > 0);
+    }
+    return j;
+  }
+
+  /** the input device */
+  private java.io.Reader zzReader;
+
+  /** the current state of the DFA */
+  private int zzState;
+
+  /** the current lexical state */
+  private int zzLexicalState = YYINITIAL;
+
+  /** this buffer contains the current text to be matched and is
+      the source of the yytext() string */
+  private char zzBuffer[] = new char[ZZ_BUFFERSIZE];
+
+  /** the textposition at the last accepting state */
+  private int zzMarkedPos;
+
+  /** the current text position in the buffer */
+  private int zzCurrentPos;
+
+  /** startRead marks the beginning of the yytext() string in the buffer */
+  private int zzStartRead;
+
+  /** endRead marks the last character in the buffer, that has been read
+      from input */
+  private int zzEndRead;
+
+  /** number of newlines encountered up to the start of the matched text */
+  private int yyline;
+
+  /** the number of characters up to the start of the matched text */
+  private int yychar;
+
+  /**
+   * the number of characters from the last newline up to the start of the 
+   * matched text
+   */
+  private int yycolumn;
+
+  /** 
+   * zzAtBOL == true <=> the scanner is currently at the beginning of a line
+   */
+  private boolean zzAtBOL = true;
+
+  /** zzAtEOF == true <=> the scanner is at the EOF */
+  private boolean zzAtEOF;
+
+  /** denotes if the user-EOF-code has already been executed */
+  private boolean zzEOFDone;
+
+  /* user code: */
+  public static boolean DEBUG = false;
+
+
+  /**
+   * Creates a new scanner
+   * There is also a java.io.InputStream version of this constructor.
+   *
+   * @param   in  the java.io.Reader to read input from.
+   */
+  public MFinalCoordLexer(java.io.Reader in) {
+    this.zzReader = in;
+  }
+
+  /**
+   * Creates a new scanner.
+   * There is also java.io.Reader version of this constructor.
+   *
+   * @param   in  the java.io.Inputstream to read input from.
+   */
+  public MFinalCoordLexer(java.io.InputStream in) {
+    this(new java.io.InputStreamReader(in));
+  }
+
+
+  /**
+   * Refills the input buffer.
+   *
+   * @return      <code>false</code>, iff there was new input.
+   * 
+   * @exception   java.io.IOException  if any I/O-Error occurs
+   */
+  private boolean zzRefill() throws java.io.IOException {
+
+    /* first: make room (if you can) */
+    if (zzStartRead > 0) {
+      System.arraycopy(zzBuffer, zzStartRead,
+                       zzBuffer, 0,
+                       zzEndRead-zzStartRead);
+
+      /* translate stored positions */
+      zzEndRead-= zzStartRead;
+      zzCurrentPos-= zzStartRead;
+      zzMarkedPos-= zzStartRead;
+      zzStartRead = 0;
+    }
+
+    /* is the buffer big enough? */
+    if (zzCurrentPos >= zzBuffer.length) {
+      /* if not: blow it up */
+      char newBuffer[] = new char[zzCurrentPos*2];
+      System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length);
+      zzBuffer = newBuffer;
+    }
+
+    /* finally: fill the buffer with new input */
+    int numRead = zzReader.read(zzBuffer, zzEndRead,
+                                            zzBuffer.length-zzEndRead);
+
+    if (numRead > 0) {
+      zzEndRead+= numRead;
+      return false;
+    }
+    // unlikely but not impossible: read 0 characters, but not at end of 
stream    
+    if (numRead == 0) {
+      int c = zzReader.read();
+      if (c == -1) {
+        return true;
+      } else {
+        zzBuffer[zzEndRead++] = (char) c;
+        return false;
+      }     
+    }
+
+       // numRead < 0
+    return true;
+  }
+
+    
+  /**
+   * Closes the input stream.
+   */
+  public final void yyclose() throws java.io.IOException {
+    zzAtEOF = true;            /* indicate end of file */
+    zzEndRead = zzStartRead;  /* invalidate buffer    */
+
+    if (zzReader != null)
+      zzReader.close();
+  }
+
+
+  /**
+   * Resets the scanner to read from a new input stream.
+   * Does not close the old reader.
+   *
+   * All internal variables are reset, the old input stream 
+   * <b>cannot</b> be reused (internal buffer is discarded and lost).
+   * Lexical state is set to <tt>ZZ_INITIAL</tt>.
+   *
+   * @param reader   the new input stream 
+   */
+  public final void yyreset(java.io.Reader reader) {
+    zzReader = reader;
+    zzAtBOL  = true;
+    zzAtEOF  = false;
+    zzEOFDone = false;
+    zzEndRead = zzStartRead = 0;
+    zzCurrentPos = zzMarkedPos = 0;
+    yyline = yychar = yycolumn = 0;
+    zzLexicalState = YYINITIAL;
+  }
+
+
+  /**
+   * Returns the current lexical state.
+   */
+  public final int yystate() {
+    return zzLexicalState;
+  }
+
+
+  /**
+   * Enters a new lexical state
+   *
+   * @param newState the new lexical state
+   */
+  public final void yybegin(int newState) {
+    zzLexicalState = newState;
+  }
+
+
+  /**
+   * Returns the text matched by the current regular expression.
+   */
+  public final String yytext() {
+    return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead );
+  }
+
+
+  /**
+   * Returns the character at position <tt>pos</tt> from the 
+   * matched text. 
+   * 
+   * It is equivalent to yytext().charAt(pos), but faster
+   *
+   * @param pos the position of the character to fetch. 
+   *            A value from 0 to yylength()-1.
+   *
+   * @return the character at position pos
+   */
+  public final char yycharat(int pos) {
+    return zzBuffer[zzStartRead+pos];
+  }
+
+
+  /**
+   * Returns the length of the matched text region.
+   */
+  public final int yylength() {
+    return zzMarkedPos-zzStartRead;
+  }
+
+
+  /**
+   * Reports an error that occured while scanning.
+   *
+   * In a wellformed scanner (no or only correct usage of 
+   * yypushback(int) and a match-all fallback rule) this method 
+   * will only be called with things that "Can't Possibly Happen".
+   * If this method is called, something is seriously wrong
+   * (e.g. a JFlex bug producing a faulty scanner etc.).
+   *
+   * Usual syntax/scanner level error handling should be done
+   * in error fallback rules.
+   *
+   * @param   errorCode  the code of the errormessage to display
+   */
+  private void zzScanError(int errorCode) {
+    String message;
+    try {
+      message = ZZ_ERROR_MSG[errorCode];
+    }
+    catch (ArrayIndexOutOfBoundsException e) {
+      message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR];
+    }
+
+    throw new Error(message);
+  } 
+
+
+  /**
+   * Pushes the specified amount of characters back into the input stream.
+   *
+   * They will be read again by then next call of the scanning method
+   *
+   * @param number  the number of characters to be read again.
+   *                This number must not be greater than yylength()!
+   */
+  public void yypushback(int number)  {
+    if ( number > yylength() )
+      zzScanError(ZZ_PUSHBACK_2BIG);
+
+    zzMarkedPos -= number;
+  }
+
+
+  /**
+   * Contains user EOF-code, which will be executed exactly once,
+   * when the end of file is reached
+   */
+  private void zzDoEOF() throws java.io.IOException {
+    if (!zzEOFDone) {
+      zzEOFDone = true;
+      yyclose();
+    }
+  }
+
+
+  /**
+   * Resumes scanning until the next regular expression is matched,
+   * the end of input is encountered or an I/O-Error occurs.
+   *
+   * @return      the next token
+   * @exception   java.io.IOException  if any I/O-Error occurs
+   */
+  public java_cup.runtime.Symbol next_token() throws java.io.IOException {
+    int zzInput;
+    int zzAction;
+
+    // cached fields:
+    int zzCurrentPosL;
+    int zzMarkedPosL;
+    int zzEndReadL = zzEndRead;
+    char [] zzBufferL = zzBuffer;
+    char [] zzCMapL = ZZ_CMAP;
+
+    int [] zzTransL = ZZ_TRANS;
+    int [] zzRowMapL = ZZ_ROWMAP;
+    int [] zzAttrL = ZZ_ATTRIBUTE;
+
+    while (true) {
+      zzMarkedPosL = zzMarkedPos;
+
+      zzAction = -1;
+
+      zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL;
+  
+      zzState = ZZ_LEXSTATE[zzLexicalState];
+
+
+      zzForAction: {
+        while (true) {
+    
+          if (zzCurrentPosL < zzEndReadL)
+            zzInput = zzBufferL[zzCurrentPosL++];
+          else if (zzAtEOF) {
+            zzInput = YYEOF;
+            break zzForAction;
+          }
+          else {
+            // store back cached positions
+            zzCurrentPos  = zzCurrentPosL;
+            zzMarkedPos   = zzMarkedPosL;
+            boolean eof = zzRefill();
+            // get translated positions and possibly new buffer
+            zzCurrentPosL  = zzCurrentPos;
+            zzMarkedPosL   = zzMarkedPos;
+            zzBufferL      = zzBuffer;
+            zzEndReadL     = zzEndRead;
+            if (eof) {
+              zzInput = YYEOF;
+              break zzForAction;
+            }
+            else {
+              zzInput = zzBufferL[zzCurrentPosL++];
+            }
+          }
+          int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ];
+          if (zzNext == -1) break zzForAction;
+          zzState = zzNext;
+
+          int zzAttributes = zzAttrL[zzState];
+          if ( (zzAttributes & 1) == 1 ) {
+            zzAction = zzState;
+            zzMarkedPosL = zzCurrentPosL;
+            if ( (zzAttributes & 8) == 8 ) break zzForAction;
+          }
+
+        }
+      }
+
+      // store back cached position
+      zzMarkedPos = zzMarkedPosL;
+
+      switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) {
+        case 2: 
+          { yybegin (INPUTA);
+   return new Symbol(MFinalCoordSym.INPUT2, new Integer(yytext()));
+          }
+        case 14: break;
+        case 7: 
+          { yybegin (INPUT);
+   return new Symbol(MFinalCoordSym.INPUT7, new Float(yytext()));
+          }
+        case 15: break;
+        case 8: 
+          { yybegin(IGNOREALL);
+      return new Symbol(MFinalCoordSym.SCFDONE);
+          }
+        case 16: break;
+        case 10: 
+          { yybegin(INPUTF);
+            return new Symbol(MFinalCoordSym.INPUT1);
+          }
+        case 17: break;
+        case 5: 
+          { yybegin (INPUTD);
+   return new Symbol(MFinalCoordSym.INPUT5, new Float(yytext()));
+          }
+        case 18: break;
+        case 12: 
+          { yybegin (INPUT);
+   return new Symbol(MFinalCoordSym.DASH1);
+          }
+        case 19: break;
+        case 4: 
+          { yybegin (INPUTC);
+   return new Symbol(MFinalCoordSym.INPUT4, new Float(yytext()));
+          }
+        case 20: break;
+        case 3: 
+          { yybegin (INPUTB);
+   return new Symbol(MFinalCoordSym.INPUT3);
+          }
+        case 21: break;
+        case 6: 
+          { yybegin (INPUTE);
+   return new Symbol(MFinalCoordSym.INPUT6, new Float(yytext()));
+          }
+        case 22: break;
+        case 11: 
+          { yybegin(ITER);
+           return new Symbol(MFinalCoordSym.FOUNDITER);
+          }
+        case 23: break;
+        case 9: 
+          { yybegin(ITER);
+          return new Symbol(MFinalCoordSym.FOUNDITER);
+          }
+        case 24: break;
+        case 13: 
+          { yybegin (ITER);
+   return new Symbol(MFinalCoordSym.DASH2);
+          }
+        case 25: break;
+        case 1: 
+          { 
+          }
+        case 26: break;
+        default: 
+          if (zzInput == YYEOF && zzStartRead == zzCurrentPos) {
+            zzAtEOF = true;
+            zzDoEOF();
+              { return new java_cup.runtime.Symbol(MFinalCoordSym.EOF); }
+          } 
+          else {
+            zzScanError(ZZ_NO_MATCH);
+          }
+      }
+    }
+  }
+
+  /**
+   * Converts an int token code into the name of the
+   * token by reflection on the cup symbol class/interface sym
+   *
+   * This code was contributed by Karl Meissner <[email protected]>
+   */
+  private String getTokenName(int token) {
+    try {
+      java.lang.reflect.Field [] classFields = 
MFinalCoordSym.class.getFields();
+      for (int i = 0; i < classFields.length; i++) {
+        if (classFields[i].getInt(null) == token) {
+          return classFields[i].getName();
+        }
+      }
+    } catch (Exception e) {
+      e.printStackTrace(System.err);
+    }
+
+    return "UNKNOWN TOKEN";
+  }
+
+  /**
+   * Same as next_token but also prints the token to standard out
+   * for debugging.
+   *
+   * This code was contributed by Karl Meissner <[email protected]>
+   */
+  public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException 
{
+    java_cup.runtime.Symbol s = next_token();
+    System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--");
+    return s;
+  }
+
+  /**
+   * Runs the scanner on input files.
+   *
+   * This is a standalone scanner, it will print any unmatched
+   * text to System.out unchanged.
+   *
+   * @param argv   the command line, contains the filenames to run
+   *               the scanner on.
+   */
+  public static void main(String argv[]) {
+    if (argv.length == 0) {
+      System.out.println("Usage : java MFinalCoordLexer <inputfile>");
+    }
+    else {
+      for (int i = 0; i < argv.length; i++) {
+        MFinalCoordLexer scanner = null;
+        try {
+          scanner = new MFinalCoordLexer( new java.io.FileReader(argv[i]) );
+          while ( !scanner.zzAtEOF ) scanner.next_token();
+        }
+        catch (java.io.FileNotFoundException e) {
+          System.out.println("File not found : \""+argv[i]+"\"");
+        }
+        catch (java.io.IOException e) {
+          System.out.println("IO error scanning file \""+argv[i]+"\"");
+          System.out.println(e);
+        }
+        catch (Exception e) {
+          System.out.println("Unexpected exception:");
+          e.printStackTrace();
+        }
+      }
+    }
+  }
+
+
+}

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordParser.java
----------------------------------------------------------------------
diff --git 
a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordParser.java
 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordParser.java
new file mode 100644
index 0000000..53db468
--- /dev/null
+++ 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordParser.java
@@ -0,0 +1,408 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements.  See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership.  The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License.  You may obtain a copy of the License at
+*
+*   http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied.  See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.mfinalcoord;
+
+
+import java_cup.runtime.lr_parser;
+import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser;
+
+import javax.swing.*;
+import java.io.FileReader;
+import java.util.ArrayList;
+import java.util.HashMap;
+
+
+public class MFinalCoordParser extends java_cup.runtime.lr_parser implements 
GridChemQueueParser {
+
+  /** Default constructor. */
+  public MFinalCoordParser() {super();}
+
+  /** Constructor which sets the default scanner. */
+  public MFinalCoordParser(java_cup.runtime.Scanner s) {super(s);}
+
+    /**
+     * Constructor which uses a file reader.
+     */
+    public MFinalCoordParser(final FileReader fileReader) {
+        super(new MFinalCoordLexer(fileReader));
+    }
+
+
+    /** Production table. */
+  protected static final short _production_table[][] = 
+    lr_parser.unpackFromStrings(new String[]{
+            "\000\016\000\002\003\005\000\002\002\004\000\002\004" +
+                    "\003\000\002\005\004\000\002\005\003\000\002\006\006" +
+                    "\000\002\017\004\000\002\017\003\000\002\020\010\000" +
+                    "\002\012\003\000\002\013\003\000\002\014\003\000\002" +
+                    "\015\003\000\002\016\003"});
+
+  /** Access to production table. */
+  public short[][] production_table() {return _production_table;}
+
+  /** Parse-action table. */
+  protected static final short[][] _action_table = 
+    lr_parser.unpackFromStrings(new String[]{
+            "\000\032\000\004\005\005\001\002\000\004\004\010\001" +
+                    "\002\000\004\004\uffff\001\002\000\004\002\007\001\002" +
+                    "\000\004\002\000\001\002\000\004\007\015\001\002\000" +
+                    "\006\004\010\006\013\001\002\000\006\004\ufffd\006\ufffd" 
+
+                    "\001\002\000\004\002\001\001\002\000\006\004\ufffe\006" +
+                    "\ufffe\001\002\000\004\011\016\001\002\000\004\012\ufff8" 
+
+                    "\001\002\000\004\012\025\001\002\000\006\010\ufffa\011" +
+                    "\ufffa\001\002\000\006\010\022\011\016\001\002\000\006" +
+                    
"\004\ufffc\006\ufffc\001\002\000\006\010\ufffb\011\ufffb\001" +
+                    "\002\000\004\013\026\001\002\000\004\013\ufff7\001\002" +
+                    "\000\004\016\027\001\002\000\004\017\ufff6\001\002\000" +
+                    "\004\017\031\001\002\000\004\020\ufff5\001\002\000\004" +
+                    "\020\033\001\002\000\006\010\ufff4\011\ufff4\001\002\000" 
+
+                    "\006\010\ufff9\011\ufff9\001\002"});
+
+  /** Access to parse-action table. */
+  public short[][] action_table() {return _action_table;}
+
+  /** <code>reduce_goto</code> table. */
+  protected static final short[][] _reduce_table = 
+    lr_parser.unpackFromStrings(new String[]{
+            "\000\032\000\006\003\005\004\003\001\001\000\006\005" +
+                    "\010\006\011\001\001\000\002\001\001\000\002\001\001" +
+                    "\000\002\001\001\000\002\001\001\000\004\006\013\001" +
+                    "\001\000\002\001\001\000\002\001\001\000\002\001\001" +
+                    "\000\010\012\016\017\020\020\017\001\001\000\002\001" +
+                    "\001\000\004\013\023\001\001\000\002\001\001\000\006" +
+                    "\012\016\020\022\001\001\000\002\001\001\000\002\001" +
+                    "\001\000\002\001\001\000\002\001\001\000\004\014\027" +
+                    "\001\001\000\002\001\001\000\004\015\031\001\001\000" +
+                    "\002\001\001\000\004\016\033\001\001\000\002\001\001" +
+                    "\000\002\001\001"});
+
+  /** Access to <code>reduce_goto</code> table. */
+  public short[][] reduce_table() {return _reduce_table;}
+
+  /** Instance of action encapsulation class. */
+  protected CUP$parser$actions action_obj;
+
+    //Each string is of the format
+    //center# atomic# x_coord y_coord z_coord
+    private ArrayList<String> result = new ArrayList<String>();
+    private String tempStr = "";
+
+
+
+    public ArrayList<String> getResult() {
+        return result;
+    }
+
+    public void addToResult(String value) {
+        result.add(value);
+    }
+
+    public String getTempStr() {
+        return tempStr;
+    }
+
+    public void setTempStr(String s) {
+        this.tempStr = s;
+    }
+
+    /*Adding the parsed data to the hash map */
+    @Override
+    public HashMap<String, String> getParsedData() throws Exception {
+        parse();
+        HashMap<String,String> results= new HashMap<String,String>();
+        int zCount=0;
+        int xCount=0;
+        int yCount=0;
+        int center=0;
+        int atom=0;
+        for(int i=0;i<result.size();i++) {
+            String singleString = result.get(i);
+            String[] temp = singleString.split(" ");
+            if (temp.length > 1) {
+                String keyElement = temp[0];
+                String dataElement = temp[1];
+                if (keyElement.equals("Z")) {
+                    results.put("FinalCoordParser_Z_coord_" + zCount, 
dataElement);
+                    zCount++;
+                } else if (keyElement.equals("Y")) {
+                    results.put("FinalCoordParser_Y_coord_" + yCount, 
dataElement);
+                    yCount++;
+                } else if (keyElement.equals("X")) {
+                    results.put("FinalCoordParser_X_coord_" + xCount, 
dataElement);
+                    xCount++;
+                } else if (keyElement.equals("Atom")) {
+                    results.put("FinalCoordParser_AtomicNumber_" + atom, 
dataElement);
+                    atom++;
+                } else if (keyElement.equals("center")) {
+                    results.put("FinalCoordParser_CenterNumber_" + center, 
dataElement);
+                    center++;
+                }
+            }
+        }
+return results;
+
+
+        }
+
+  /** Action encapsulation object initializer. */
+  protected void init_actions()
+    {
+      action_obj = new CUP$parser$actions(this);
+    }
+
+  /** Invoke a user supplied parse action. */
+  public java_cup.runtime.Symbol do_action(
+    int                        act_num,
+    java_cup.runtime.lr_parser parser,
+    java.util.Stack            stack,
+    int                        top)
+    throws java.lang.Exception
+  {
+    /* call code in generated class */
+    return action_obj.CUP$parser$do_action(act_num, parser, stack, top);
+  }
+
+  /** Indicates start state. */
+  public int start_state() {return 0;}
+  /** Indicates start production. */
+  public int start_production() {return 1;}
+
+  /** <code>EOF</code> Symbol index. */
+  public int EOF_sym() {return 0;}
+
+  /** <code>error</code> Symbol index. */
+  public int error_sym() {return 1;}
+
+
+}
+
+/** Cup generated class to encapsulate user supplied action code.*/
+class CUP$parser$actions {
+
+ 
+  //__________________________________
+  public static boolean DEBUG = true;
+  private static JTable table;               
+  private static final String tableLabel = "SCF Intermediate Results:";
+// private static String cycle = "0";
+ 
+  
+  public static JTable getTable() {
+    return table;
+  }
+
+  public static String getTableLabel() {
+    return tableLabel;
+  }
+
+//   }
+
+  private final MFinalCoordParser MFinalCoordParser;
+
+  /** Constructor */
+  CUP$parser$actions(MFinalCoordParser MFinalCoordParser) {
+    this.MFinalCoordParser = MFinalCoordParser;
+  }
+
+  /** Method with the actual generated action code. */
+  public final java_cup.runtime.Symbol CUP$parser$do_action(
+    int                        CUP$parser$act_num,
+    java_cup.runtime.lr_parser CUP$parser$parser,
+    java.util.Stack            CUP$parser$stack,
+    int                        CUP$parser$top)
+    throws java.lang.Exception
+    {
+      /* Symbol object for return from actions */
+      java_cup.runtime.Symbol CUP$parser$result;
+
+      /* select the action based on the action number */
+      switch (CUP$parser$act_num)
+        {
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 13: // inp7 ::= INPUT7 
+            {
+              Object RESULT = null;
+               int in7left = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+               int in7right = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+               Float in7 = (Float)((java_cup.runtime.Symbol) 
CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+                
//___________________________________________________________________
+   if (DEBUG) System.out.println("CUP:Input:  z coordinate "+in7);
+                MFinalCoordParser.addToResult("Z "+in7);
+ 
+              CUP$parser$result = new java_cup.runtime.Symbol(12/*inp7*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 12: // inp6 ::= INPUT6 
+            {
+              Object RESULT = null;
+               int in6left = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+               int in6right = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+               Float in6 = (Float)((java_cup.runtime.Symbol) 
CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+                
//___________________________________________________________________
+   if (DEBUG) System.out.println("CUP:Input:  y coordinate "+in6);
+                MFinalCoordParser.addToResult("Y "+in6);
+ 
+              CUP$parser$result = new java_cup.runtime.Symbol(11/*inp6*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 11: // inp5 ::= INPUT5 
+            {
+              Object RESULT = null;
+               int in5left = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+               int in5right = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+               Float in5 = (Float)((java_cup.runtime.Symbol) 
CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+                
//___________________________________________________________________
+   if (DEBUG) System.out.println("CUP:Input:  x coordinate "+in5);
+                MFinalCoordParser.addToResult("X "+in5);
+ 
+              CUP$parser$result = new java_cup.runtime.Symbol(10/*inp5*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 10: // inp3 ::= INPUT3 
+            {
+              Object RESULT = null;
+               int in3left = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+               int in3right = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+               Integer in3 = (Integer)((java_cup.runtime.Symbol) 
CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+                
//___________________________________________________________________
+   if (DEBUG) System.out.println("CUP:Input:  atomic number "+in3);
+                MFinalCoordParser.addToResult("Atom "+in3);
+ 
+              CUP$parser$result = new java_cup.runtime.Symbol(9/*inp3*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 9: // inp2 ::= INPUT2 
+            {
+              Object RESULT = null;
+               int in2left = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+               int in2right = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+               Integer in2 = (Integer)((java_cup.runtime.Symbol) 
CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+                
//___________________________________________________________________
+   if (DEBUG) System.out.println("CUP:Input:  center number "+in2);
+                MFinalCoordParser.addToResult("center "+in2);
+ 
+              CUP$parser$result = new java_cup.runtime.Symbol(8/*inp2*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 8: // cycle2 ::= inp2 inp3 INPUT4 inp5 inp6 inp7 
+            {
+              Object RESULT = null;
+
+              CUP$parser$result = new java_cup.runtime.Symbol(14/*cycle2*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-5)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 7: // cycle1 ::= cycle2 
+            {
+              Object RESULT = null;
+
+              CUP$parser$result = new java_cup.runtime.Symbol(13/*cycle1*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 6: // cycle1 ::= cycle1 cycle2 
+            {
+              Object RESULT = null;
+
+              CUP$parser$result = new java_cup.runtime.Symbol(13/*cycle1*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 5: // scfcycle ::= INPUT1 DASH1 cycle1 DASH2 
+            {
+              Object RESULT = null;
+
+              CUP$parser$result = new java_cup.runtime.Symbol(4/*scfcycle*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 4: // scfpat ::= scfcycle 
+            {
+              Object RESULT = null;
+
+              CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 3: // scfpat ::= scfpat scfcycle 
+            {
+              Object RESULT = null;
+                if (DEBUG) System.out.println("CUP:Input: in scfpat"); 
+              CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 2: // scfintro ::= FOUNDITER 
+            {
+              Object RESULT = null;
+                if (DEBUG) System.out.println("CUP:Input:  found the start of 
Iteration"); 
+              CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 1: // $START ::= startpt EOF 
+            {
+              Object RESULT = null;
+               int start_valleft = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left;
+               int start_valright = 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right;
+               Object start_val = (Object)((java_cup.runtime.Symbol) 
CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+               RESULT = start_val;
+              CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          /* ACCEPT */
+          CUP$parser$parser.done_parsing();
+          return CUP$parser$result;
+
+          /*. . . . . . . . . . . . . . . . . . . .*/
+          case 0: // startpt ::= scfintro scfpat SCFDONE 
+            {
+              Object RESULT = null;
+
+              CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left, 
((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, 
RESULT);
+            }
+          return CUP$parser$result;
+
+          /* . . . . . .*/
+          default:
+            throw new Exception(
+               "Invalid action number found in internal parse table");
+
+        }
+    }
+}
+

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordSym.java
----------------------------------------------------------------------
diff --git 
a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordSym.java
 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordSym.java
new file mode 100644
index 0000000..0f11011
--- /dev/null
+++ 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mfinalcoord/MFinalCoordSym.java
@@ -0,0 +1,46 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements.  See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership.  The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License.  You may obtain a copy of the License at
+*
+*   http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied.  See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.mfinalcoord;
+//----------------------------------------------------
+// The following code was generated by CUP v0.10k
+// Fri Sep 12 00:01:06 IST 2014
+//----------------------------------------------------
+
+/** CUP generated class containing symbol constants. */
+public class MFinalCoordSym {
+  /* terminals */
+  public static final int ENERGY = 11;
+  public static final int EOF = 0;
+  public static final int ITERATION = 10;
+  public static final int INPUT7 = 14;
+  public static final int error = 1;
+  public static final int INPUT6 = 13;
+  public static final int INPUT5 = 12;
+  public static final int INPUT4 = 9;
+  public static final int SCFDONE = 4;
+  public static final int INPUT3 = 8;
+  public static final int FOUNDITER = 3;
+  public static final int INPUT2 = 7;
+  public static final int DASH2 = 6;
+  public static final int INPUT1 = 2;
+  public static final int DASH1 = 5;
+}
+

http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaLexer.java
----------------------------------------------------------------------
diff --git 
a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaLexer.java
 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaLexer.java
new file mode 100644
index 0000000..a7d9f0f
--- /dev/null
+++ 
b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/mopta/MOptaLexer.java
@@ -0,0 +1,830 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements.  See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership.  The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License.  You may obtain a copy of the License at
+*
+*   http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied.  See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.mopta;/* The following 
code was generated by JFlex 1.4.3 on 9/12/14 12:11 AM */
+
+import java_cup.runtime.Symbol;
+import org.apache.airavata.datacat.parsers.gridchem.Settings;
+
+
+/**
+ * This class is a scanner generated by
+ * <a href="http://www.jflex.de/";>JFlex</a> 1.4.3
+ * on 9/12/14 12:11 AM from the specification file
+ * <tt>mopta.flex</tt>
+ */
+public class MOptaLexer implements java_cup.runtime.Scanner {
+
+    /**
+     * This character denotes the end of file
+     */
+    public static final int YYEOF = -1;
+    /**
+     * lexical states
+     */
+    public static final int ITER2 = 6;
+    public static final int DASH = 10;
+    public static final int INTVALUE = 12;
+    public static final int SCF1 = 2;
+    public static final int IGNOREALL = 30;
+    public static final int ITER = 4;
+    public static final int YYINITIAL = 0;
+    /**
+     * the current lexical state
+     */
+    private int zzLexicalState = YYINITIAL;
+    public static final int ITER9 = 22;
+    public static final int ITER12 = 28;
+    public static final int ITER8 = 8;
+    public static final int ITER11 = 26;
+    public static final int ITER7 = 20;
+    public static final int ITER10 = 24;
+    public static final int ITER6 = 18;
+    public static final int ITER5 = 16;
+    public static final int ITER4 = 14;
+    /**
+     * initial size of the lookahead buffer
+     */
+    private static final int ZZ_BUFFERSIZE = 16384;
+    /**
+     * this buffer contains the current text to be matched and is
+     * the source of the yytext() string
+     */
+    private char zzBuffer[] = new char[ZZ_BUFFERSIZE];
+    /**
+     * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l
+     * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l
+     * at the beginning of a line
+     * l is of the form l = 2*k, k a non negative integer
+     */
+    private static final int ZZ_LEXSTATE[] = {
+            0, 0, 1, 1, 2, 2, 1, 1, 3, 3, 4, 4, 1, 1, 5, 5,
+            6, 6, 7, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 1, 1
+    };
+    /**
+     * Translates characters to character classes
+     */
+    private static final char[] ZZ_CMAP = {
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            11, 0, 0, 0, 0, 0, 0, 0, 15, 6, 1, 4, 0, 4, 5, 0,
+            2, 38, 3, 3, 3, 3, 3, 41, 3, 3, 0, 0, 0, 0, 0, 0,
+            0, 20, 0, 0, 18, 9, 0, 13, 0, 7, 0, 0, 17, 21, 12, 16,
+            24, 0, 10, 23, 8, 0, 0, 19, 22, 14, 0, 0, 0, 0, 0, 0,
+            0, 0, 34, 36, 40, 25, 39, 0, 0, 32, 0, 37, 35, 27, 33, 26,
+            0, 0, 29, 0, 28, 0, 0, 31, 0, 30, 0, 0, 4, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
+    };
+    /**
+     * Translates DFA states to action switch labels.
+     */
+    private static final int[] ZZ_ACTION = zzUnpackAction();
+    private static final String ZZ_ACTION_PACKED_0 =
+            "\15\0\2\1\2\2\24\1\4\0\1\3\3\0\1\4" +
+                    "\2\0\1\5\2\0\1\6\2\0\1\7\2\0\1\10" +
+                    "\2\0\1\11\2\0\1\12\2\0\1\13\70\0\1\14" +
+                    "\51\0\1\15\114\0\1\16";
+    /**
+     * Translates a state to a row index in the transition table
+     */
+    private static final int[] ZZ_ROWMAP = zzUnpackRowMap();
+
+    private static final String ZZ_ROWMAP_PACKED_0 =
+            "\0\0\0\52\0\124\0\176\0\250\0\322\0\374\0\u0126" +
+                    
"\0\u0150\0\u017a\0\u01a4\0\u01ce\0\u01f8\0\u0222\0\u024c\0\u0222" +
+                    
"\0\u0276\0\u02a0\0\u02ca\0\u02f4\0\u031e\0\u0348\0\u0372\0\u039c" +
+                    
"\0\u03c6\0\u03f0\0\u041a\0\u0444\0\u046e\0\u0498\0\u04c2\0\u04ec" +
+                    
"\0\u0516\0\u0540\0\u056a\0\u0594\0\u05be\0\u05e8\0\u0612\0\u02ca" +
+                    
"\0\u02f4\0\u02f4\0\u063c\0\u0348\0\u0372\0\u0372\0\u039c\0\u03c6" +
+                    
"\0\u03c6\0\u03f0\0\u041a\0\u041a\0\u0444\0\u046e\0\u046e\0\u0498" +
+                    
"\0\u04c2\0\u04c2\0\u04ec\0\u0516\0\u0516\0\u0540\0\u056a\0\u056a" +
+                    
"\0\u0594\0\u05be\0\u05be\0\u0666\0\u0690\0\u06ba\0\u06e4\0\u070e" +
+                    
"\0\u0738\0\u0762\0\u078c\0\u07b6\0\u07e0\0\u080a\0\u0834\0\u085e" +
+                    
"\0\u0888\0\u08b2\0\u08dc\0\u0906\0\u0930\0\u095a\0\u0984\0\u09ae" +
+                    
"\0\u09d8\0\u0a02\0\u0a2c\0\u0a56\0\u0a80\0\u0aaa\0\u0ad4\0\u0afe" +
+                    
"\0\u0b28\0\u0b52\0\u0b7c\0\u0ba6\0\u0bd0\0\u0bfa\0\u0c24\0\u0c4e" +
+                    
"\0\u0c78\0\u0ca2\0\u0ccc\0\u0cf6\0\u0d20\0\u0d4a\0\u0d74\0\u0d9e" +
+                    
"\0\u0dc8\0\u0df2\0\u0e1c\0\u0e46\0\u0e70\0\u0e9a\0\u0ec4\0\u0eee" +
+                    
"\0\u0f18\0\u0f42\0\u0f6c\0\u0222\0\u0f96\0\u0fc0\0\u0fea\0\u1014" +
+                    
"\0\u103e\0\u1068\0\u1092\0\u10bc\0\u10e6\0\u1110\0\u113a\0\u1164" +
+                    
"\0\u118e\0\u11b8\0\u11e2\0\u120c\0\u1236\0\u1260\0\u128a\0\u12b4" +
+                    
"\0\u12de\0\u1308\0\u1332\0\u135c\0\u1386\0\u13b0\0\u13da\0\u1404" +
+                    
"\0\u142e\0\u1458\0\u1482\0\u14ac\0\u14d6\0\u1500\0\u152a\0\u1554" +
+                    
"\0\u157e\0\u15a8\0\u15d2\0\u15fc\0\u1626\0\u0222\0\u1650\0\u167a" +
+                    
"\0\u16a4\0\u16ce\0\u16f8\0\u1722\0\u174c\0\u1776\0\u17a0\0\u17ca" +
+                    
"\0\u17f4\0\u181e\0\u1848\0\u1872\0\u189c\0\u18c6\0\u18f0\0\u191a" +
+                    
"\0\u1944\0\u196e\0\u1998\0\u19c2\0\u19ec\0\u1a16\0\u1a40\0\u1a6a" +
+                    
"\0\u1a94\0\u1abe\0\u1ae8\0\u1b12\0\u1b3c\0\u1b66\0\u1b90\0\u1bba" +
+                    
"\0\u1be4\0\u1c0e\0\u1c38\0\u1c62\0\u1c8c\0\u1cb6\0\u1ce0\0\u1d0a" +
+                    
"\0\u1d34\0\u1d5e\0\u1d88\0\u1db2\0\u1ddc\0\u1e06\0\u1e30\0\u1e5a" +
+                    
"\0\u1e84\0\u1eae\0\u1ed8\0\u1f02\0\u1f2c\0\u1f56\0\u1f80\0\u1faa" +
+                    
"\0\u1fd4\0\u1ffe\0\u2028\0\u2052\0\u207c\0\u20a6\0\u20d0\0\u20fa" +
+                    
"\0\u2124\0\u214e\0\u2178\0\u21a2\0\u21cc\0\u21f6\0\u2220\0\u224a" +
+                    "\0\u2274\0\u229e\0\u0222";
+    /**
+     * The transition table of the DFA
+     */
+    private static final int[] ZZ_TRANS = zzUnpackTrans();
+    private static final String ZZ_TRANS_PACKED_0 =
+            "\7\16\1\17\116\16\1\20\1\21\11\16\1\22\30\16" +
+                    "\1\21\2\16\1\21\2\16\3\23\1\24\40\16\1\23" +
+                    "\2\16\1\23\1\16\1\25\52\16\3\26\1\27\40\16" +
+                    "\1\26\2\16\1\26\2\16\3\30\1\31\40\16\1\30" +
+                    "\2\16\1\30\2\16\3\32\1\33\40\16\1\32\2\16" +
+                    "\1\32\2\16\3\34\1\35\40\16\1\34\2\16\1\34" +
+                    "\2\16\3\36\1\37\40\16\1\36\2\16\1\36\2\16" +
+                    "\3\40\1\41\40\16\1\40\2\16\1\40\2\16\3\42" +
+                    "\1\43\40\16\1\42\2\16\1\42\2\16\3\44\1\45" +
+                    "\40\16\1\44\2\16\1\44\62\0\1\46\43\0\2\21" +
+                    "\42\0\1\21\2\0\1\21\31\0\1\47\22\0\2\50" +
+                    "\1\0\1\51\40\0\1\50\2\0\1\50\2\0\2\52" +
+                    "\42\0\1\52\2\0\1\52\1\0\1\53\52\0\2\54" +
+                    "\1\0\1\55\40\0\1\54\2\0\1\54\2\0\2\56" +
+                    "\42\0\1\56\2\0\1\56\2\0\2\57\1\0\1\60" +
+                    "\40\0\1\57\2\0\1\57\2\0\2\61\42\0\1\61" +
+                    "\2\0\1\61\2\0\2\62\1\0\1\63\40\0\1\62" +
+                    "\2\0\1\62\2\0\2\64\42\0\1\64\2\0\1\64" +
+                    "\2\0\2\65\1\0\1\66\40\0\1\65\2\0\1\65" +
+                    "\2\0\2\67\42\0\1\67\2\0\1\67\2\0\2\70" +
+                    "\1\0\1\71\40\0\1\70\2\0\1\70\2\0\2\72" +
+                    "\42\0\1\72\2\0\1\72\2\0\2\73\1\0\1\74" +
+                    "\40\0\1\73\2\0\1\73\2\0\2\75\42\0\1\75" +
+                    "\2\0\1\75\2\0\2\76\1\0\1\77\40\0\1\76" +
+                    "\2\0\1\76\2\0\2\100\42\0\1\100\2\0\1\100" +
+                    "\2\0\2\101\1\0\1\102\40\0\1\101\2\0\1\101" +
+                    "\2\0\2\103\42\0\1\103\2\0\1\103\11\0\1\104" +
+                    "\72\0\1\105\20\0\1\106\62\0\1\107\72\0\1\110" +
+                    "\17\0\1\111\55\0\1\112\75\0\1\113\21\0\1\114" +
+                    "\63\0\1\115\72\0\1\116\16\0\1\117\63\0\1\120" +
+                    "\73\0\1\121\15\0\1\122\63\0\1\123\74\0\1\124" +
+                    "\14\0\1\125\61\0\1\126\53\0\1\127\37\0\1\130" +
+                    "\64\0\1\131\74\0\1\132\13\0\1\133\61\0\1\134" +
+                    "\75\0\1\135\15\0\1\136\62\0\1\137\77\0\1\140" +
+                    "\12\0\1\141\65\0\1\142\70\0\1\143\16\0\1\144" +
+                    "\66\0\1\145\67\0\1\146\16\0\1\147\67\0\1\150" +
+                    "\63\0\1\151\21\0\1\152\70\0\1\153\72\0\1\154" +
+                    "\11\0\1\155\71\0\1\156\43\0\1\157\37\0\1\160" +
+                    "\72\0\1\161\63\0\1\162\16\0\1\163\56\0\1\164" +
+                    "\75\0\1\165\20\0\1\166\63\0\1\167\51\0\1\170" +
+                    "\37\0\1\171\63\0\1\172\100\0\1\173\10\0\1\174" +
+                    "\63\0\1\175\101\0\1\176\21\0\1\177\70\0\1\200" +
+                    "\30\0\1\201\104\0\1\202\21\0\1\203\102\0\1\204" +
+                    "\15\0\1\205\53\0\1\206\50\0\1\207\52\0\1\210" +
+                    "\53\0\1\211\102\0\1\212\21\0\1\213\46\0\1\214" +
+                    "\55\0\1\215\64\0\1\216\33\0\1\217\104\0\1\220" +
+                    "\13\0\1\221\53\0\1\222\61\0\1\223\63\0\1\224" +
+                    "\22\0\1\225\74\0\1\226\33\0\1\227\102\0\1\230" +
+                    "\20\0\1\231\70\0\1\232\32\0\1\233\73\0\1\234" +
+                    "\27\0\1\235\106\0\1\236\14\0\1\237\51\0\1\240" +
+                    "\51\0\1\241\107\0\1\242\22\0\1\243\31\0\1\244" +
+                    "\60\0\1\245\42\0\1\246\62\0\1\247\51\0\1\250" +
+                    "\51\0\1\251\51\0\1\252\51\0\1\253\51\0\1\254" +
+                    "\51\0\1\255\51\0\1\256\51\0\1\257\51\0\1\260" +
+                    "\53\0\1\261\46\0\1\262\63\0\1\263\47\0\1\264" +
+                    "\54\0\1\265\50\0\1\266\53\0\1\267\36\0\1\270" +
+                    "\51\0\1\271\51\0\1\272\51\0\1\273\51\0\1\274" +
+                    "\53\0\1\275\46\0\1\276\63\0\1\277\47\0\1\300" +
+                    "\43\0\1\301\55\0\1\302\43\0\1\303\64\0\1\304" +
+                    "\37\0\1\305\51\0\1\306\51\0\1\307\51\0\1\310" +
+                    "\53\0\1\311\46\0\1\312\63\0\1\313\47\0\1\314" +
+                    "\41\0\1\315\64\0\1\316\53\0\1\317\35\0\1\320" +
+                    "\51\0\1\321\51\0\1\322\51\0\1\323\51\0\1\324" +
+                    "\65\0\1\325\32\0\1\326\52\0\1\327\70\0\1\330" +
+                    "\46\0\1\331\50\0\1\332\53\0\1\333\36\0\1\334" +
+                    "\51\0\1\335\51\0\1\336\51\0\1\337\51\0\1\340" +
+                    "\65\0\1\341\32\0\1\342\52\0\1\343\70\0\1\344" +
+                    "\42\0\1\345\41\0\1\346\54\0\1\347\50\0\1\350" +
+                    "\51\0\1\351\51\0\1\352\51\0\1\353\51\0\1\354" +
+                    "\65\0\1\355\32\0\1\356\52\0\1\357\70\0\1\360" +
+                    "\33\0\1\361\64\0\1\362\53\0\1\363\22\0";
+    /* error codes */
+    private static final int ZZ_UNKNOWN_ERROR = 0;
+    private static final int ZZ_NO_MATCH = 1;
+    private static final int ZZ_PUSHBACK_2BIG = 2;
+    /* error messages for the codes above */
+    private static final String ZZ_ERROR_MSG[] = {
+            "Unkown internal scanner error",
+            "Error: could not match input",
+            "Error: pushback value was too large"
+    };
+    /**
+     * ZZ_ATTRIBUTE[aState] contains the attributes of state 
<code>aState</code>
+     */
+    private static final int[] ZZ_ATTRIBUTE = zzUnpackAttribute();
+    private static final String ZZ_ATTRIBUTE_PACKED_0 =
+            "\15\0\1\11\1\1\1\11\25\1\4\0\1\1\3\0" +
+                    "\1\1\2\0\1\1\2\0\1\1\2\0\1\1\2\0" +
+                    "\1\1\2\0\1\1\2\0\1\1\2\0\1\1\70\0" +
+                    "\1\11\51\0\1\11\114\0\1\11";
+    /* user code: */
+    public static boolean DEBUG = false;
+    /**
+     * the input device
+     */
+    private java.io.Reader zzReader;
+    /**
+     * the current state of the DFA
+     */
+    private int zzState;
+    /**
+     * the textposition at the last accepting state
+     */
+    private int zzMarkedPos;
+    /**
+     * the current text position in the buffer
+     */
+    private int zzCurrentPos;
+    /**
+     * startRead marks the beginning of the yytext() string in the buffer
+     */
+    private int zzStartRead;
+    /**
+     * endRead marks the last character in the buffer, that has been read
+     * from input
+     */
+    private int zzEndRead;
+    /**
+     * number of newlines encountered up to the start of the matched text
+     */
+    private int yyline;
+    /**
+     * the number of characters up to the start of the matched text
+     */
+    private int yychar;
+    /**
+     * the number of characters from the last newline up to the start of the
+     * matched text
+     */
+    private int yycolumn;
+    /**
+     * zzAtBOL == true <=> the scanner is currently at the beginning of a line
+     */
+    private boolean zzAtBOL = true;
+    /**
+     * zzAtEOF == true <=> the scanner is at the EOF
+     */
+    private boolean zzAtEOF;
+    /**
+     * denotes if the user-EOF-code has already been executed
+     */
+    private boolean zzEOFDone;
+
+    /**
+     * Creates a new scanner
+     * There is also a java.io.InputStream version of this constructor.
+     *
+     * @param in the java.io.Reader to read input from.
+     */
+    public MOptaLexer(java.io.Reader in) {
+        this.zzReader = in;
+    }
+
+    /**
+     * Creates a new scanner.
+     * There is also java.io.Reader version of this constructor.
+     *
+     * @param in the java.io.Inputstream to read input from.
+     */
+    public MOptaLexer(java.io.InputStream in) {
+        this(new java.io.InputStreamReader(in));
+    }
+
+    private static int[] zzUnpackAction() {
+        int[] result = new int[243];
+        int offset = 0;
+        offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result);
+        return result;
+    }
+
+    private static int zzUnpackAction(String packed, int offset, int[] result) 
{
+        int i = 0;       /* index in packed string  */
+        int j = offset;  /* index in unpacked array */
+        int l = packed.length();
+        while (i < l) {
+            int count = packed.charAt(i++);
+            int value = packed.charAt(i++);
+            do result[j++] = value; while (--count > 0);
+        }
+        return j;
+    }
+
+    private static int[] zzUnpackRowMap() {
+        int[] result = new int[243];
+        int offset = 0;
+        offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result);
+        return result;
+    }
+
+    private static int zzUnpackRowMap(String packed, int offset, int[] result) 
{
+        int i = 0;  /* index in packed string  */
+        int j = offset;  /* index in unpacked array */
+        int l = packed.length();
+        while (i < l) {
+            int high = packed.charAt(i++) << 16;
+            result[j++] = high | packed.charAt(i++);
+        }
+        return j;
+    }
+
+    private static int[] zzUnpackTrans() {
+        int[] result = new int[8904];
+        int offset = 0;
+        offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result);
+        return result;
+    }
+
+    private static int zzUnpackTrans(String packed, int offset, int[] result) {
+        int i = 0;       /* index in packed string  */
+        int j = offset;  /* index in unpacked array */
+        int l = packed.length();
+        while (i < l) {
+            int count = packed.charAt(i++);
+            int value = packed.charAt(i++);
+            value--;
+            do result[j++] = value; while (--count > 0);
+        }
+        return j;
+    }
+
+    private static int[] zzUnpackAttribute() {
+        int[] result = new int[243];
+        int offset = 0;
+        offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result);
+        return result;
+    }
+
+    private static int zzUnpackAttribute(String packed, int offset, int[] 
result) {
+        int i = 0;       /* index in packed string  */
+        int j = offset;  /* index in unpacked array */
+        int l = packed.length();
+        while (i < l) {
+            int count = packed.charAt(i++);
+            int value = packed.charAt(i++);
+            do result[j++] = value; while (--count > 0);
+        }
+        return j;
+    }
+
+    /**
+     * Runs the scanner on input files.
+     * <p/>
+     * This is a standalone scanner, it will print any unmatched
+     * text to System.out unchanged.
+     *
+     * @param argv the command line, contains the filenames to run
+     *             the scanner on.
+     */
+    public static void main(String argv[]) {
+        if (argv.length == 0) {
+            System.out.println("Usage : java MOptaLexer <inputfile>");
+        } else {
+            for (int i = 0; i < argv.length; i++) {
+                MOptaLexer scanner = null;
+                try {
+                    scanner = new MOptaLexer(new java.io.FileReader(argv[i]));
+                    while (!scanner.zzAtEOF) scanner.next_token();
+                } catch (java.io.FileNotFoundException e) {
+                    System.out.println("File not found : \"" + argv[i] + "\"");
+                } catch (java.io.IOException e) {
+                    System.out.println("IO error scanning file \"" + argv[i] + 
"\"");
+                    System.out.println(e);
+                } catch (Exception e) {
+                    System.out.println("Unexpected exception:");
+                    e.printStackTrace();
+                }
+            }
+        }
+    }
+
+    /**
+     * Refills the input buffer.
+     *
+     * @return <code>false</code>, iff there was new input.
+     * @throws java.io.IOException if any I/O-Error occurs
+     */
+    private boolean zzRefill() throws java.io.IOException {
+
+    /* first: make room (if you can) */
+        if (zzStartRead > 0) {
+            System.arraycopy(zzBuffer, zzStartRead,
+                    zzBuffer, 0,
+                    zzEndRead - zzStartRead);
+
+      /* translate stored positions */
+            zzEndRead -= zzStartRead;
+            zzCurrentPos -= zzStartRead;
+            zzMarkedPos -= zzStartRead;
+            zzStartRead = 0;
+        }
+
+    /* is the buffer big enough? */
+        if (zzCurrentPos >= zzBuffer.length) {
+      /* if not: blow it up */
+            char newBuffer[] = new char[zzCurrentPos * 2];
+            System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length);
+            zzBuffer = newBuffer;
+        }
+
+    /* finally: fill the buffer with new input */
+        int numRead = zzReader.read(zzBuffer, zzEndRead,
+                zzBuffer.length - zzEndRead);
+
+        if (numRead > 0) {
+            zzEndRead += numRead;
+            return false;
+        }
+        // unlikely but not impossible: read 0 characters, but not at end of 
stream
+        if (numRead == 0) {
+            int c = zzReader.read();
+            if (c == -1) {
+                return true;
+            } else {
+                zzBuffer[zzEndRead++] = (char) c;
+                return false;
+            }
+        }
+
+        // numRead < 0
+        return true;
+    }
+
+    /**
+     * Closes the input stream.
+     */
+    public final void yyclose() throws java.io.IOException {
+        zzAtEOF = true;            /* indicate end of file */
+        zzEndRead = zzStartRead;  /* invalidate buffer    */
+
+        if (zzReader != null)
+            zzReader.close();
+    }
+
+    /**
+     * Resets the scanner to read from a new input stream.
+     * Does not close the old reader.
+     * <p/>
+     * All internal variables are reset, the old input stream
+     * <b>cannot</b> be reused (internal buffer is discarded and lost).
+     * Lexical state is set to <tt>ZZ_INITIAL</tt>.
+     *
+     * @param reader the new input stream
+     */
+    public final void yyreset(java.io.Reader reader) {
+        zzReader = reader;
+        zzAtBOL = true;
+        zzAtEOF = false;
+        zzEOFDone = false;
+        zzEndRead = zzStartRead = 0;
+        zzCurrentPos = zzMarkedPos = 0;
+        yyline = yychar = yycolumn = 0;
+        zzLexicalState = YYINITIAL;
+    }
+
+    /**
+     * Returns the current lexical state.
+     */
+    public final int yystate() {
+        return zzLexicalState;
+    }
+
+    /**
+     * Enters a new lexical state
+     *
+     * @param newState the new lexical state
+     */
+    public final void yybegin(int newState) {
+        zzLexicalState = newState;
+    }
+
+    /**
+     * Returns the text matched by the current regular expression.
+     */
+    public final String yytext() {
+        return new String(zzBuffer, zzStartRead, zzMarkedPos - zzStartRead);
+    }
+
+    /**
+     * Returns the character at position <tt>pos</tt> from the
+     * matched text.
+     * <p/>
+     * It is equivalent to yytext().charAt(pos), but faster
+     *
+     * @param pos the position of the character to fetch.
+     *            A value from 0 to yylength()-1.
+     * @return the character at position pos
+     */
+    public final char yycharat(int pos) {
+        return zzBuffer[zzStartRead + pos];
+    }
+
+    /**
+     * Returns the length of the matched text region.
+     */
+    public final int yylength() {
+        return zzMarkedPos - zzStartRead;
+    }
+
+    /**
+     * Reports an error that occured while scanning.
+     * <p/>
+     * In a wellformed scanner (no or only correct usage of
+     * yypushback(int) and a match-all fallback rule) this method
+     * will only be called with things that "Can't Possibly Happen".
+     * If this method is called, something is seriously wrong
+     * (e.g. a JFlex bug producing a faulty scanner etc.).
+     * <p/>
+     * Usual syntax/scanner level error handling should be done
+     * in error fallback rules.
+     *
+     * @param errorCode the code of the errormessage to display
+     */
+    private void zzScanError(int errorCode) {
+        String message;
+        try {
+            message = ZZ_ERROR_MSG[errorCode];
+        } catch (ArrayIndexOutOfBoundsException e) {
+            message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR];
+        }
+
+        throw new Error(message);
+    }
+
+    /**
+     * Pushes the specified amount of characters back into the input stream.
+     * <p/>
+     * They will be read again by then next call of the scanning method
+     *
+     * @param number the number of characters to be read again.
+     *               This number must not be greater than yylength()!
+     */
+    public void yypushback(int number) {
+        if (number > yylength())
+            zzScanError(ZZ_PUSHBACK_2BIG);
+
+        zzMarkedPos -= number;
+    }
+
+    /**
+     * Contains user EOF-code, which will be executed exactly once,
+     * when the end of file is reached
+     */
+    private void zzDoEOF() throws java.io.IOException {
+        if (!zzEOFDone) {
+            zzEOFDone = true;
+            yyclose();
+        }
+    }
+
+    /**
+     * Resumes scanning until the next regular expression is matched,
+     * the end of input is encountered or an I/O-Error occurs.
+     *
+     * @return the next token
+     * @throws java.io.IOException if any I/O-Error occurs
+     */
+    public java_cup.runtime.Symbol next_token() throws java.io.IOException {
+        int zzInput;
+        int zzAction;
+
+        // cached fields:
+        int zzCurrentPosL;
+        int zzMarkedPosL;
+        int zzEndReadL = zzEndRead;
+        char[] zzBufferL = zzBuffer;
+        char[] zzCMapL = ZZ_CMAP;
+
+        int[] zzTransL = ZZ_TRANS;
+        int[] zzRowMapL = ZZ_ROWMAP;
+        int[] zzAttrL = ZZ_ATTRIBUTE;
+
+        while (true) {
+            zzMarkedPosL = zzMarkedPos;
+
+            zzAction = -1;
+
+            zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL;
+
+            zzState = ZZ_LEXSTATE[zzLexicalState];
+
+
+            zzForAction:
+            {
+                while (true) {
+
+                    if (zzCurrentPosL < zzEndReadL)
+                        zzInput = zzBufferL[zzCurrentPosL++];
+                    else if (zzAtEOF) {
+                        zzInput = YYEOF;
+                        break zzForAction;
+                    } else {
+                        // store back cached positions
+                        zzCurrentPos = zzCurrentPosL;
+                        zzMarkedPos = zzMarkedPosL;
+                        boolean eof = zzRefill();
+                        // get translated positions and possibly new buffer
+                        zzCurrentPosL = zzCurrentPos;
+                        zzMarkedPosL = zzMarkedPos;
+                        zzBufferL = zzBuffer;
+                        zzEndReadL = zzEndRead;
+                        if (eof) {
+                            zzInput = YYEOF;
+                            break zzForAction;
+                        } else {
+                            zzInput = zzBufferL[zzCurrentPosL++];
+                        }
+                    }
+                    int zzNext = zzTransL[zzRowMapL[zzState] + 
zzCMapL[zzInput]];
+                    if (zzNext == -1) break zzForAction;
+                    zzState = zzNext;
+
+                    int zzAttributes = zzAttrL[zzState];
+                    if ((zzAttributes & 1) == 1) {
+                        zzAction = zzState;
+                        zzMarkedPosL = zzCurrentPosL;
+                        if ((zzAttributes & 8) == 8) break zzForAction;
+                    }
+
+                }
+            }
+
+            // store back cached position
+            zzMarkedPos = zzMarkedPosL;
+
+            switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) {
+                case 4: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
the energy");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER5);
+                    return new Symbol(MOptaSym.ENERGY, new Float(yytext()));
+                }
+                case 15:
+                    break;
+                case 7: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float3");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER8);
+                    return new Symbol(MOptaSym.FLOAT3);
+                }
+                case 16:
+                    break;
+                case 8: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float5");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER10);
+                    return new Symbol(MOptaSym.FLOAT5);
+                }
+                case 17:
+                    break;
+                case 3: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float4");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER9);
+                    return new Symbol(MOptaSym.FLOAT4);
+                }
+                case 18:
+                    break;
+                case 12: {
+                    yybegin(IGNOREALL);
+                    return new Symbol(MOptaSym.SCFDONE);
+                }
+                case 19:
+                    break;
+                case 11: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float8");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER);
+                    return new Symbol(MOptaSym.FLOAT8);
+                }
+                case 20:
+                    break;
+                case 10: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float7");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER12);
+                    return new Symbol(MOptaSym.FLOAT7);
+                }
+                case 21:
+                    break;
+                case 6: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float2");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER7);
+                    return new Symbol(MOptaSym.FLOAT2);
+                }
+                case 22:
+                    break;
+                case 2: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
the first integer in the iteration");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER4);
+                    return new Symbol(MOptaSym.INTCycle, new 
Integer(yytext()));
+                }
+                case 23:
+                    break;
+                case 14: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
START OF");
+                    yybegin(ITER);
+                    return new Symbol(MOptaSym.FOUNDITER);
+                }
+                case 24:
+                    break;
+                case 9: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float6");
+                    if (Settings.DEBUG) System.out.println(yytext());
+                    yybegin(ITER11);
+                    return new Symbol(MOptaSym.FLOAT6);
+                }
+                case 25:
+                    break;
+                case 13: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
the dash");
+                    yybegin(DASH);
+                }
+                case 26:
+                    break;
+                case 1: {
+                }
+                case 27:
+                    break;
+                case 5: {
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: ITER5");
+                    if (Settings.DEBUG) System.out.println("MOptaFlex: Found 
float1");
+                    System.out.println(yytext());
+                    yybegin(ITER6);
+                    return new Symbol(MOptaSym.FLOAT1);
+                }
+                case 28:
+                    break;
+                default:
+                    if (zzInput == YYEOF && zzStartRead == zzCurrentPos) {
+                        zzAtEOF = true;
+                        zzDoEOF();
+                        {
+                            return new java_cup.runtime.Symbol(MOptaSym.EOF);
+                        }
+                    } else {
+                        zzScanError(ZZ_NO_MATCH);
+                    }
+            }
+        }
+    }
+
+    /**
+     * Converts an int token code into the name of the
+     * token by reflection on the cup symbol class/interface sym
+     * <p/>
+     * This code was contributed by Karl Meissner <[email protected]>
+     */
+    private String getTokenName(int token) {
+        try {
+            java.lang.reflect.Field[] classFields = MOptaSym.class.getFields();
+            for (int i = 0; i < classFields.length; i++) {
+                if (classFields[i].getInt(null) == token) {
+                    return classFields[i].getName();
+                }
+            }
+        } catch (Exception e) {
+            e.printStackTrace(System.err);
+        }
+
+        return "UNKNOWN TOKEN";
+    }
+
+    /**
+     * Same as next_token but also prints the token to standard out
+     * for debugging.
+     * <p/>
+     * This code was contributed by Karl Meissner <[email protected]>
+     */
+    public java_cup.runtime.Symbol debug_next_token() throws 
java.io.IOException {
+        java_cup.runtime.Symbol s = next_token();
+        System.out.println(" --" + yytext() + "--" + getTokenName(s.sym) + 
"--");
+        return s;
+    }
+
+
+}

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