This is an automated email from the ASF dual-hosted git repository. lahirujayathilake pushed a commit to branch master in repository https://gitbox.apache.org/repos/asf/airavata.git
commit 5f42822a165d092b57a8d06a1fb3ee0b113a8c45 Author: lahiruj <[email protected]> AuthorDate: Mon Mar 10 10:51:57 2025 -0400 updated the gkeyll notebook script --- .../jupyterhub/data/gkeyll/plotE_z.ipynb | 39 +++++++++++++--------- 1 file changed, 23 insertions(+), 16 deletions(-) diff --git a/modules/agent-framework/deployments/jupyterhub/data/gkeyll/plotE_z.ipynb b/modules/agent-framework/deployments/jupyterhub/data/gkeyll/plotE_z.ipynb index 49de4e2389..ff7cc617b0 100644 --- a/modules/agent-framework/deployments/jupyterhub/data/gkeyll/plotE_z.ipynb +++ b/modules/agent-framework/deployments/jupyterhub/data/gkeyll/plotE_z.ipynb @@ -35,7 +35,7 @@ "metadata": {}, "outputs": [], "source": [ - "!ls /anvil/projects/x-phy220105/cwsmith/vlabApps/gkyldataset" + "!ls /anvil/projects/x-phy220105/gkylMarch2025/vlabApps/gemReconnection" ] }, { @@ -46,23 +46,20 @@ "outputs": [], "source": [ "from pathlib import Path\n", - "import matplotlib.pyplot as plt \n", - "\n", - "import os\n", - "\n", + "import matplotlib.pyplot as plt\n", "import postgkyl as pg\n", "\n", - "data_base_path = \"/anvil/projects/x-phy220105/cwsmith/vlabApps/gkyldataset\"\n", + "data_base_path = \"/anvil/projects/x-phy220105/gkylMarch2025/vlabApps/gemReconnection\"\n", "run = Path.cwd()\n", "\n", "def getModelType():\n", - " frame = 0 \n", + " frame = 0\n", " models = [\"5m\", \"10m\"]\n", " for model in models:\n", - " path = Path(f\"{data_base_path}/rt-{model}-gem_field_{frame}.bp\")\n", + " path = Path(f\"{data_base_path}/rt_{model}_gem_gzero-field_{frame}.gkyl\")\n", " if path.is_file():\n", " return model\n", - " error = \"Failed to find input ADIOS file rt-5m-gem_field_0.bp or rt-10m-gem_field_0.bp.\"\n", + " error = \"Failed to find input file \" + str(path)\n", " assert False, error" ] }, @@ -73,9 +70,9 @@ "metadata": {}, "outputs": [], "source": [ - "frame = 0 \n", + "frame = 0\n", "model = getModelType()\n", - "filename = run / f\"{data_base_path}/rt-{model}-gem_field_{frame}.bp\"\n", + "filename = run / f\"{data_base_path}/rt_{model}_gem_gzero-field_{frame}.gkyl\"\n", "filename = str(filename)\n", "print(filename)" ] @@ -89,13 +86,13 @@ "source": [ "gdata = pg.GData(filename)\n", "\n", - "vals = gdata.getValues() # cell-center values, shape is Ny * Nx * Ncomponents\n", - "grid = gdata.getGrid() # cell corner coordinates\n", - "ndim = gdata.getNumDims() # number of spatial dimensions\n", + "vals = gdata.get_values() # cell-center values, shape is Ny * Nx * Ncomponents\n", + "grid = gdata.get_grid() # cell corner coordinates\n", + "ndim = gdata.get_num_dims() # number of spatial dimensions\n", "\n", "assert len(vals.shape) == ndim+1 and len(grid) == ndim\n", "\n", - "icomp = 3 \n", + "icomp = 3\n", "compName = r'$E_z^2$'\n", "fileName = \"E_z.png\"\n", "\n", @@ -110,7 +107,9 @@ "ax.set_xlabel('x')\n", "ax.set_ylabel('y')\n", "ax.set_title(compName)\n", - "ax.set_aspect(1)" + "ax.set_aspect(1)\n", + "\n", + "plt.savefig(fileName)" ] }, { @@ -131,6 +130,14 @@ "%stop_runtime test_cpu\n", "%switch_runtime local" ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "5d87f6d9-2547-473d-987a-af5306d6f00b", + "metadata": {}, + "outputs": [], + "source": [] } ], "metadata": {
