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• (airavata) branch workflow-support deleted (was 4ea83c8f48) yasith
• (airavata) branch new-workflow-design deleted (was 509f2037ea) yasith
• (airavata) branch cybershuttle-staging updated: move mktemp from agent.sh into airavata-agent yasith
• (airavata) branch cybershuttle-staging updated: fix issues in agent/sdk for creating custom environments. update agent deployment scripts yasith
• (airavata) branch airavata-gov-registry deleted (was b6e07d7ba9) yasith
• (airavata) branch grouper-integration deleted (was 3d5af1950f) yasith
• (airavata) branch airavata-3282 deleted (was d08780b44a) yasith
• (airavata) branch deprecated-gfac-modules deleted (was 1e2f784a71) yasith
• (airavata) branch data-model-pre-1.0-discussion deleted (was 3f216348fb) yasith
• (airavata) branch airavata-docker deleted (was c139d656c5) yasith
• (airavata) branch cybershuttle-staging updated (b212d69258 -> 21d1de0226) yasith
  • (airavata) 04/06: update AgentManagementHandler to send libraries, pip, and mounts in the Agent launch request. yasith
  • (airavata) 01/06: Changed the uploading file size in enveomics gateway yasith
  • (airavata) 02/06: ide-integration docker-compose changes yasith
  • (airavata) 03/06: update agent to accept libraries, pip, and mounts as input. yasith
  • (airavata) 06/06: add overlay fs to agent for rw access. update makefile scripts, add stderr logging to agent yasith
• (airavata) branch cybershuttle-staging updated (fcb0c50670 -> b212d69258) dimuthuupe
  • (airavata) 01/06: refactoring UI and responsive changes dimuthuupe
  • (airavata) 03/06: Support logout dimuthuupe
  • (airavata) 05/06: Condense to single resource page + allow unauthenticated routes dimuthuupe
  • (airavata) 04/06: Homepage + redirecting logins dimuthuupe
  • (airavata) 06/06: Cybershuttle.org homepage copy dimuthuupe
  • (airavata) 02/06: Add auth to swagger dimuthuupe
• (airavata) branch cybershuttle-staging updated: dev authz token filter for development lahirujayathilake
• (airavata) branch cybershuttle-staging created (now 12435359d0) lahirujayathilake
  • (airavata) 01/01: initial research framework lahirujayathilake
• (airavata) branch cybershuttle-staging updated (e77eab862b -> fcb0c50670) dimuthuupe
  • (airavata) 05/10: update Makefiles and bump airavata python sdk to 2.0.5 dimuthuupe
  • (airavata) 03/10: refine agent.go, fix bugs dimuthuupe
  • (airavata) 09/10: bump python sdk version to 2.0.5.post2 dimuthuupe
  • (airavata) 07/10: update sdk and agent service to accep yml file and dependencies. dimuthuupe
  • (airavata) 06/10: fix bugs in python sdk after base image / api changes dimuthuupe
  • (airavata) 08/10: update notebooks dimuthuupe
  • (airavata) 10/10: make remote cell execution responsive. bump version to 2.0.6 dimuthuupe
  • (airavata) 01/10: point to same agent-communication.proto dimuthuupe
  • (airavata) 04/10: add kernel restart functionality to agent service and agent dimuthuupe
• (airavata) branch agent-framewok-refactoring updated: dynamic data mounts for different cs images lahirujayathilake
• (airavata) branch cybershuttle-staging updated: renamed the file to fix npm run build lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Authentication for Research Portal (#481) lahirujayathilake
• (airavata) branch cybershuttle-staging updated: configurable allowed origin for research service lahirujayathilake
• (airavata) branch cybershuttle-staging updated: fixed the thrift client issue, cannot reuse the client connection for multiple calls lahirujayathilake
• (airavata) branch cybershuttle-staging updated: rhub session impl and some refactoring lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Allow file tree exploring & handle rate limit error lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Backend integration with portal lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Use StoragePath from Properties in AgentManagementHandler lahirujayathilake
• (airavata) branch cybershuttle-staging updated: File tree added to ProjectDetails.tsx lahirujayathilake
• (airavata) branch cybershuttle-staging updated: spawn containers with the given project, reattach to existing sessions, service updates, and data initializations lahirujayathilake
• (airavata) branch cybershuttle-staging updated: initialize user and changes to rhub service classes lahirujayathilake
• (airavata) branch cybershuttle-staging updated: disable authz token verification in dev mode lahirujayathilake
• (airavata) branch cybershuttle-staging updated: session entity impl and entity modifications lahirujayathilake
• (airavata) branch cybershuttle-staging updated: clone the repo in to the work directory and grant the right permissions lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: updated notebook lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: updated the notebook and docker files lahirujayathilake
• (airavata) branch cybershuttle-staging updated: jupyterhub instance to show sample notebooks lahirujayathilake
• (airavata) branch cybershuttle-staging updated (20745efd0e -> 1ce60a6253) lahirujayathilake
  • (airavata) 02/04: Basic API implementation working lahirujayathilake
  • (airavata) 03/04: Add support for ModelResource lahirujayathilake
  • (airavata) 04/04: Pull multiple resources lahirujayathilake
  • (airavata) 01/04: Setup complete lahirujayathilake
• (airavata) branch cybershuttle-staging updated: authz token filtering and extracting username for the hub lahirujayathilake
• (airavata) branch cybershuttle-staging updated: global exception handler and boiler template for spinning up a new JL cloning a git repo and mounting ro volume lahirujayathilake
• (airavata) branch cybershuttle-staging updated: relative dataset path for the spawner lahirujayathilake
• (airavata) branch cybershuttle-staging updated: research hub configurations and compose files lahirujayathilake
• (airavata) branch cybershuttle-staging updated: entity classes and structure for research framework lahirujayathilake
• (airavata) branch cybershuttle-staging updated: add research portal lahirujayathilake
• (airavata) branch cybershuttle-dev updated: move portal to research-framework lahirujayathilake
• (airavata) branch cybershuttle-dev updated: initial research framework lahirujayathilake
• (airavata) branch master updated: ide-integration docker-compose changes lahirujayathilake
• (airavata) branch cybershuttle-dev updated (45243c04e4 -> 22be98dcd9) lahirujayathilake
  • (airavata) 03/21: create devcontainer.json and integrate with docker-compose file. fix bugs. lahirujayathilake
  • (airavata) 04/21: updated devcontainer and compose for easy use in vscode lahirujayathilake
  • (airavata) 11/21: fix generated protos unused issue lahirujayathilake
  • (airavata) 18/21: migrate openjpa to hibernate, update pool and dbcp deps to pool2 and dbcp2. lahirujayathilake
  • (airavata) 14/21: simplify devcontainer. unify maven-compiler plugin version. lahirujayathilake
  • (airavata) 15/21: migrate javax.mail to jakarta.mail to fix email-monitor bug. exclude conflicting angus-mail dependency. add missing @Deprecated tags. lahirujayathilake
  • (airavata) 08/21: bump all jdk deps to 17. get devcontainer to working state. add launch.json for vscode integration. add openjpa runtimeoptimization tag to persistence.xml. bump mysql connector to 8.0.31. add dns tags to keystore generation script (browser https compatibility), move keystores to top-level and add build-time copy to project resources. fix Serializable warning in UserPK.java lahirujayathilake
  • (airavata) 05/21: add AF2Complex notebook lahirujayathilake
  • (airavata) 10/21: update rabbitmq and proto versions, fix proto path in agent-service lahirujayathilake
  • (airavata) 17/21: parametrize pom versions. add maven-enforcer rule for dependency convergence and fix version issues. lahirujayathilake
  • (airavata) 06/21: rename devcontainer to Airavata lahirujayathilake
  • (airavata) 20/21: fix issues with helix participant and job engine starter lahirujayathilake
  • (airavata) 19/21: get hibernate orm to validate against test db. manually specify catalog for conflicting entities. lahirujayathilake
  • (airavata) 12/21: fix pom issues when running in devcontainer lahirujayathilake
  • (airavata) 07/21: move docker-compose file to .devcontainer lahirujayathilake
  • (airavata) 21/21: cleanup code. add placeholders for job monitor email/pw in airavata-server.properties lahirujayathilake
  • (airavata) 09/21: change protobuf plugin to a maintained one lahirujayathilake
  • (airavata) 02/21: move self-signed certs to a single location lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: multi server jupyterhub config lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: jupyterhub config file to support ro:data and wr:code lahirujayathilake
• (airavata) branch cybershuttle-dev updated (5097dd7196 -> 45243c04e4) lahirujayathilake
  • (airavata) 03/03: jobmanager configs and included registry server properties for real-time monitor lahirujayathilake
  • (airavata) 01/03: bump version zookeeper and kafka lahirujayathilake
  • (airavata) 02/03: excluded logback from file service lahirujayathilake
• (airavata) branch cybershuttle-dev updated (a3785536c7 -> 5097dd7196) lahirujayathilake
• (airavata) branch master updated: Changed the uploading file size in enveomics gateway eroma
• (airavata) branch master updated (c965eb82e5 -> 5f42822a16) lahirujayathilake
  • (airavata) 11/31: make settings.ini lean, add runtime picker {by cluster, category}. change agent base dir. lahirujayathilake
  • (airavata) 24/31: fix dependency issue in cyberfaces agent lahirujayathilake
  • (airavata) 16/31: add back kernel launcher to agent lahirujayathilake
  • (airavata) 23/31: fix bugs in airavata-jupyter-magic package lahirujayathilake
  • (airavata) 21/31: cleanup imports, fix bugs found by type checker lahirujayathilake
  • (airavata) 15/31: choose group/project from API, silent plan launch, add_replica() -> create_task(), display task state, planid and taskid, improve messaging lahirujayathilake
  • (airavata) 02/31: add file ops to jupyter magics, cleanup code, update agent.sh lahirujayathilake
  • (airavata) 12/31: add pre-submission validator, update storage dir, take CONNECTION_SVC_URL and FILEMGR_SVC_URL from settings.ini, cleanup runtime.py, add fallback apis to airavata.py, rearrange files, setup file ul/dl apis, improve ux, update notebooks, add agent scripts, refine code, fix bugs lahirujayathilake
  • (airavata) 22/31: enabled micromamba base when starting the kernel lahirujayathilake
  • (airavata) 01/31: CyberFaCES docker file lahirujayathilake
  • (airavata) 05/31: add airavata magics to dev-tools/, make airavata-agent/ build generic lahirujayathilake
  • (airavata) 07/31: revise jupyterhub spawned notebooks, add makefiles lahirujayathilake
  • (airavata) 10/31: venv support for agent, update notebooks, show tables as pandas df, update dir refs, fix bugs. lahirujayathilake
  • (airavata) 28/31: rename platform x86_64 -> amd64. fix issues in cyberfaces dockerfile. update notebooks. move environment files. lahirujayathilake
  • (airavata) 27/31: updated notebooks lahirujayathilake
  • (airavata) 20/31: add type-hinting imports to __init__ files lahirujayathilake
  • (airavata) 31/31: updated the gkeyll notebook script lahirujayathilake
  • (airavata) 17/31: refine Makefiles, move app-scripts to agent-framework/, fix bugs in agent.go and sample Dockerfile lahirujayathilake
  • (airavata) 26/31: refine code flow in airavata_jupyter_magic. bump version to 1.0.5, update notebook, fix bugs lahirujayathilake
  • (airavata) 03/31: temp commit to get cyberfaces meeting poc lahirujayathilake
  • (airavata) 08/31: initial experiment sdk implementation lahirujayathilake
  • (airavata) 13/31: fix bug in code execution, remove jupyter kernel start from agent add support to cold-start analysis agents reset changes to sftp_file_handling_client update notebooks remove verbose log from remote code execution separate python env creation and code execution steps. always return stdout+err for command/script executions lock agent to python 3.12 and update pyproject.toml update file listing and python execution cmds lahirujayathilake
  • (airavata) 30/31: gkeyll agent image and notebook sample lahirujayathilake
  • (airavata) 04/31: update data tar and analysis script lahirujayathilake
  • (airavata) 09/31: improve auth flow, add python code invocation, add plan crud apis and file ul/dl apis, reduce settings.ini deps, fix bugs lahirujayathilake
  • (airavata) 29/31: updated the agent dependencies lahirujayathilake
  • (airavata) 14/31: bump version to 0.0.16 add AlphaFold2 and Gaussian applications update realm from 10000000 -> default add GROMACS and AMBER to MD SDK lahirujayathilake
• (airavata) branch cybershuttle-dev updated: gkeyll agent image and notebook sample lahirujayathilake
• (airavata) branch cybershuttle-dev updated: updated the agent dependencies lahirujayathilake
• (airavata) branch cybershuttle-dev updated (9a02f2faf3 -> 9d696d9d4b) lahirujayathilake
  • (airavata) 02/06: fix dependency issue in cyberfaces agent lahirujayathilake
  • (airavata) 06/06: rename platform x86_64 -> amd64. fix issues in cyberfaces dockerfile. update notebooks. move environment files. lahirujayathilake
  • (airavata) 04/06: refine code flow in airavata_jupyter_magic. bump version to 1.0.5, update notebook, fix bugs lahirujayathilake
  • (airavata) 01/06: fix bugs in airavata-jupyter-magic package lahirujayathilake
  • (airavata) 05/06: updated notebooks lahirujayathilake
• (airavata-custos) branch master updated: User portal page API and UI changes lahirujayathilake
• (airavata-custos) branch master updated: Added patch functionality for groups (#415) lahirujayathilake
• (airavata-custos) branch master updated: update installation instructions (#414) lahirujayathilake
• (airavata-data-catalog) branch main updated: Pagination support lahirujayathilake
• (airavata) branch cybershuttle-dev updated (5a1ce93b2e -> b7f8a2b3a2) lahirujayathilake
  • (airavata) 04/14: make settings.ini lean, add runtime picker {by cluster, category}. change agent base dir. lahirujayathilake
  • (airavata) 01/14: initial experiment sdk implementation lahirujayathilake
  • (airavata) 13/14: add type-hinting imports to __init__ files lahirujayathilake
  • (airavata) 06/14: fix bug in code execution, remove jupyter kernel start from agent add support to cold-start analysis agents reset changes to sftp_file_handling_client update notebooks remove verbose log from remote code execution separate python env creation and code execution steps. always return stdout+err for command/script executions lock agent to python 3.12 and update pyproject.toml update file listing and python execution cmds lahirujayathilake
  • (airavata) 03/14: venv support for agent, update notebooks, show tables as pandas df, update dir refs, fix bugs. lahirujayathilake
  • (airavata) 14/14: cleanup imports, fix bugs found by type checker lahirujayathilake
  • (airavata) 02/14: improve auth flow, add python code invocation, add plan crud apis and file ul/dl apis, reduce settings.ini deps, fix bugs lahirujayathilake
  • (airavata) 07/14: bump version to 0.0.16 add AlphaFold2 and Gaussian applications update realm from 10000000 -> default add GROMACS and AMBER to MD SDK lahirujayathilake
  • (airavata) 05/14: add pre-submission validator, update storage dir, take CONNECTION_SVC_URL and FILEMGR_SVC_URL from settings.ini, cleanup runtime.py, add fallback apis to airavata.py, rearrange files, setup file ul/dl apis, improve ux, update notebooks, add agent scripts, refine code, fix bugs lahirujayathilake
  • (airavata) 08/14: choose group/project from API, silent plan launch, add_replica() -> create_task(), display task state, planid and taskid, improve messaging lahirujayathilake
  • (airavata) 10/14: refine Makefiles, move app-scripts to agent-framework/, fix bugs in agent.go and sample Dockerfile lahirujayathilake
  • (airavata) 09/14: add back kernel launcher to agent lahirujayathilake
• (airavata) branch master updated (d8bcee8ece -> c965eb82e5) lahirujayathilake
  • (airavata) 01/01: Merge pull request #455 from apache/agent-framewok-refactoring lahirujayathilake
• Error while running features feature from cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
• (airavata) branch cybershuttle-dev created (now c965eb82e5) lahirujayathilake
• Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
• (airavata) branch cybershuttle-dev updated: CyberFaCES docker file lahirujayathilake
• (airavata) branch cyberfaces updated: docker dependencies lahirujayathilake
• (airavata) branch cyberfaces created (now 8aa0e5f386) lahirujayathilake
  • (airavata) 01/01: initial docker config files for cyberfaces lahirujayathilake
• Error while running features feature from cyberfaces:.asf.yaml in airavata! Apache Infrastructure
• Error while running features feature from refs/heads/cyberfaces:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/cyberfaces:.asf.yaml in airavata! Apache Infrastructure
• (airavata) branch agent-framewok-refactoring updated (0a540fd60f -> 201fe322b3) lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated (776a6af7fa -> 0a540fd60f) lahirujayathilake
• Error while running features feature from refs/heads/agent-framewok-refactoring:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/agent-framewok-refactoring:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/agent-framewok-refactoring:.asf.yaml in airavata! Apache Infrastructure
• (airavata) branch agent-framewok-refactoring updated (e1bcf29695 -> 776a6af7fa) lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated (ec4a624ad2 -> e1bcf29695) lahirujayathilake
  • (airavata) 03/03: extract process id using exp id lahirujayathilake
  • (airavata) 01/03: File server initial implementation lahirujayathilake
  • (airavata) 02/03: Support to upload files lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: application interface pulled by the group lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: upgraded the sfl4j version lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: updated the docker repo name lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: included codehaus jackson dependency for helix lahirujayathilake
• (airavata) branch master updated: Changed the domain of Cybershuttle dev/staging gateway eroma
• Error while running features feature from refs/heads/master:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/master:.asf.yaml in airavata! Apache Infrastructure
  • Error while running features feature from refs/heads/master:.asf.yaml in airavata! Apache Infrastructure
• (airavata) branch agent-framewok-refactoring updated: removed log4j-slf4j-impl dependencies lahirujayathilake
• (airavata-custos) branch master updated: User page UI and code refinements (#416) lahirujayathilake
• (airavata) branch hpdc-benchmark created (now 638916072f) dimuthuupe
  • (airavata) 01/01: Temp changes to hpdc benchmark dimuthuupe
• (airavata-django-portal) branch master updated: Increase Django max file upload size lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: Fix dependency issues by replacing org.codehaus.jackson with com.fasterxml.jackson lahirujayathilake
• (airavata) branch master updated: Upgrade to log4j-slf4j2-impl for SLF4J 2.x compatibility lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: changes to the jupyter notebook lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: updated the config files lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: md notebook and cs settings file changes lahirujayathilake
• (airavata) branch file-server updated: Support to upload files dimuthuupe
• Failed to parse refs/heads/file-server:.asf.yaml in airavata! Apache Infrastructure
  • Failed to parse refs/heads/file-server:.asf.yaml in airavata! Apache Infrastructure
• (airavata) branch file-server created (now e18975880c) dimuthuupe
  • (airavata) 01/01: File server initial implementation dimuthuupe
• Failed to parse file-server:.asf.yaml in airavata! Apache Infrastructure

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