briandconnelly commented on a change in pull request #3115: [AIRFLOW-2193] Add ROperator for using R URL: https://github.com/apache/airflow/pull/3115#discussion_r258128154
########## File path: airflow/contrib/operators/r_operator.py ########## @@ -0,0 +1,79 @@ +# -*- coding: utf-8 -*- +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from builtins import bytes +import os +from tempfile import NamedTemporaryFile + +from airflow.models import BaseOperator +from airflow.utils.decorators import apply_defaults +from airflow.utils.file import TemporaryDirectory + +import rpy2.robjects as robjects +from rpy2.rinterface import RRuntimeError + + +class ROperator(BaseOperator): + """ + Execute an R script or command + + :param r_command: The command or a reference to an R script (must have + '.r' extension) to be executed (templated) + :type r_command: string + :param output_encoding: encoding output from R (default: 'utf-8') + :type output_encoding: string + + """ + + template_fields = ('r_command',) + template_ext = ('.r', '.R') + ui_color = '#C8D5E6' + + @apply_defaults + def __init__( + self, + r_command, + output_encoding='utf-8', + *args, **kwargs): + + super(ROperator, self).__init__(*args, **kwargs) + self.r_command = r_command + self.output_encoding = output_encoding + + def execute(self, context): + """ + Execute the R command or script in a temporary directory + """ + + with TemporaryDirectory(prefix='airflowtmp') as tmp_dir: + with NamedTemporaryFile(dir=tmp_dir, prefix=self.task_id) as f: + + f.write(bytes(self.r_command, 'utf_8')) + f.flush() + fname = f.name + script_location = os.path.abspath(fname) + + self.log.info("Temporary script location: %s", script_location) + self.log.info("Running command(s):\n%s", self.r_command) + + try: + res = robjects.r.source(fname, echo=False) Review comment: I use environment variables quite a bit, so I am planning to re-introduce support for them through an `env` list parameter. They were included in the original version of the operator, but were removed when I switched to rpy2. Similarly, I'm going to look into passing values to the R environment, which is very similar, but different. Although I do occasionally use command line arguments for R scripts, since this operator is essentially `source`ing the R code, they seem like they'd be a less natural fit. ---------------------------------------------------------------- This is an automated message from the Apache Git Service. To respond to the message, please log on GitHub and use the URL above to go to the specific comment. For queries about this service, please contact Infrastructure at: [email protected] With regards, Apache Git Services
