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• 2026/03/13 (ctakes) branch main updated: Do not place the ActiveMQConnectionFactory in a try with resources. It closes the connections that you create. seanfinan
• 2026/03/12 (ctakes) branch main updated: Lost logger declaration at some point seanfinan
• 2026/03/10 (ctakes) branch main updated: minor pbj updates seanfinan
• 2026/03/09 (ctakes) branch main updated: Temporary revert. seanfinan
• 2026/03/09 (ctakes) branch main updated: raised private to protected methods in AbstractTableFileWriter Improved add Date/Time methods in CalendarUtil Updated ctakes_types.py PatientMedTableFileWriter appends rows instead of one big write, outputs first mention doc time Added logging.basicConfig to pbj_pipeline.py and updated other pbj logging accordingly Update ZipFileTreeReader to use note type and dates in filenames if present seanfinan
• 2026/03/04 (ctakes) branch main updated: Fix for piper files that exist in the same directory as a main piper file that loads them. This removes the necessity of specifying "load pipeline/MyPiper" in the file MyMainPiper.piper when MyMainPiper.piper is also in the directory pipeline/ but pipeline/ is not the working directory. seanfinan
• 2026/02/27 (ctakes) branch main updated: Fix for patient doc count. Temporary, need to refactor. seanfinan
• 2026/02/27 (ctakes) branch main updated: Fix for no patient list seanfinan
• 2026/02/27 (ctakes) branch main updated: Copy ZipFileTreeReader from dphe Copy AeParamUtil from dphe seanfinan
• 2026/02/27 (ctakes) branch main updated: New PatientMedTableFileWriter Add getPrefText (singular) to IdentifiedAnnotationUtil unfinalize some methods in AbstractTableFileWriter seanfinan
• 2026/02/27 (ctakes) branch main updated: Typo in NCI table name seanfinan
• 2026/02/25 (ctakes) branch main updated: Add Corpus ID and name Set new Corpus and Patient information in AbstractFileTreeReader Log corpus name, patient count in FinishedLogger Add PatientBuilder Delegate Patient building in JCasBuilder JCasBuilder always sets doc creation date seanfinan
• 2026/02/25 (ctakes) branch main updated: Add text representation to element. Useful for LLM returns, preferred text w/o ontology normalization, and other things. seanfinan
• 2026/02/23 (ctakes) branch main updated: Take advantage of better time normalization. seanfinan
• 2026/02/20 (ctakes) branch main updated: print to log fix for stomp_receiver.py Add improved (integer) normalization to typesystem, Date, Time, Frequency, Duration. Add Frequency and Duration as features for TimeMention. seanfinan
• 2026/02/19 (ctakes-website) branch asf-site updated: mobile responsiveness johnsd
• 2026/02/19 (ctakes-website) branch asf-site updated: Revert "Improving footer and mobile responsiveness" johnsd
• 2026/02/19 (ctakes-website) branch asf-site updated: Improving footer and mobile responsiveness johnsd
• 2026/02/19 ctakes-site.git: Error while running publish feature from asf-site:.asf.yaml Apache Infrastructure
• 2026/02/19 (ctakes-site) branch asf-site updated: Improve mobile navigation and footer layout johnsd
• 2026/02/16 (ctakes) branch main updated: Added normalization for doc creation date and time. seanfinan
• 2026/01/27 (ctakes-website) 01/01: Merge pull request #3 from Prakash1185/fix/fix-homepage-responsiveness johnsd
• 2026/01/27 (ctakes-website) branch main updated (04f30da -> da307e3) johnsd
• 2026/01/27 Re: [PR] Fix : Make landing page responsive on mobile screens [ctakes-website] via GitHub
• 2026/01/27 Re: [PR] Fix : Make landing page responsive on mobile screens [ctakes-website] via GitHub
• 2026/01/27 Re: [PR] Fix : Make landing page responsive on mobile screens [ctakes-website] via GitHub
• 2026/01/25 Re: [PR] Fix : Make landing page responsive on mobile screens [ctakes-website] via GitHub
• 2026/01/21 [PR] Fix : Make landing page responsive on mobile screens [ctakes-website] via GitHub
• 2026/01/21 (ctakes) branch main updated: JavaDocs seanfinan
• 2026/01/09 (ctakes) branch main updated: Enhance StringUtil class documentation seanfinan
• 2026/01/09 (ctakes) branch main updated: Enhance comments in RelationArgumentUtil.java seanfinan
• 2026/01/09 (ctakes) branch main updated: Enhance toString method with Javadoc comment seanfinan
• 2026/01/09 (ctakes) branch main updated: Implement getCalendar method for TimeMention seanfinan
• 2026/01/09 (ctakes) branch main updated: Clarify comment in DefaultAspanComparator seanfinan
• 2026/01/05 Re: [I] [Bug]: wrong calling of bin/setenv.sh in Linux scripts in user release of cTAKES 6.0.0 [ctakes] via GitHub
• 2026/01/05 Re: [I] [Bug]: wrong calling of bin/setenv.sh in Linux scripts in user release of cTAKES 6.0.0 [ctakes] via GitHub
• 2026/01/05 (ctakes) branch main updated: Fix for serious bug in sh scripts that made them all unusable. https://github.com/apache/ctakes/issues/75 Thanks to Kaneta for the fix. seanfinan
• 2026/01/05 [I] [Bug]: wrong calling of bin/setenv.sh in Linux scripts in user release of cTAKES 6.0.0 [ctakes] via GitHub
• 2025/12/02 (ctakes) branch main updated: Added ITCR intro video link on main readme. Add ctakes-gui readme with list of GUIs. seanfinan
• 2025/12/02 (ctakes) branch main updated: Filled in readme for ctakes-core. seanfinan
• 2025/12/02 (ctakes) branch main updated: Switched from collapsable sections to exploded style. seanfinan
• 2025/12/02 (ctakes) branch main updated: Added comments for the word finder example. seanfinan
• 2025/12/02 (ctakes) branch main updated: Added information on Word Finder in ctakes-examples. seanfinan
• 2025/10/18 [I] [Question]: Getting Started Exames [ctakes] via GitHub
• 2025/09/25 (ctakes) branch main updated: Fix logger name in DictionaryDownloader. Add pbj py component and pipeline to read files in a directory. seanfinan
• 2025/09/25 Re: [I] [Question]: Getting Started Exames [ctakes] via GitHub
• 2025/09/17 (ctakes) branch main updated: Renaming of spacy negation file to negspacy johnsd
• 2025/09/17 (ctakes) branch main updated: Reformatting negspacy pipeline to use 'cas_doc_spacy_bridge.py' johnsd
• 2025/09/16 (ctakes) branch main updated: final working version of spacey example, will continue working on cas_doc_bridge impl in another branch johnsd
• 2025/09/13 (ctakes) branch main updated: starting work on PBJ utility of cas_doc_bridge johnsd
• 2025/09/12 (ctakes) branch main updated: -adding negspacy pipeline - changing print statements to logging johnsd
• 2025/09/08 Re: [I] Cannot compile project with maven [ctakes] via GitHub
• 2025/09/07 [I] Cannot compile project with maven [ctakes] via GitHub
• 2025/08/05 Re: [I] [Question]: How to include my own code library into cTAKES [ctakes] via GitHub
• 2025/07/30 (ctakes) branch main updated: Delete testfile.txt seanfinan
• 2025/07/28 Re: [I] [Question]: How to include my own code library into cTAKES [ctakes] via GitHub
• 2025/07/26 [I] [Question]: How to include my own code library into cTAKES [ctakes] via GitHub
• 2025/07/11 Re: [I] [Bug]: Windows Compilation Errors [ctakes] via GitHub
• 2025/07/11 Re: [I] [Bug]: Windows Compilation Errors [ctakes] via GitHub
• 2025/07/11 Re: [I] [Bug]: Windows Compilation Errors [ctakes] via GitHub
• 2025/07/10 Re: [I] [Bug]: Windows Compilation Errors [ctakes] via GitHub
• 2025/07/09 [I] [Bug]: Windows Compilation Errors [ctakes] via GitHub
• 2025/06/24 (ctakes) branch main updated: Update .asf.yaml johnsd
• 2025/06/13 Re: [I] [Bug]: Error: Annotator processing failed when running "ApacheConDemoRelation.piper" with UMLS 2025AA default dictionary [ctakes] via GitHub
• 2025/06/11 Re: [I] [Bug]: Error: Annotator processing failed when running "ApacheConDemoRelation.piper" with UMLS 2025AA default dictionary [ctakes] via GitHub
• 2025/06/11 Re: [I] [Bug]: Error: Annotator processing failed when running "ApacheConDemoRelation.piper" with UMLS 2025AA default dictionary [ctakes] via GitHub
• 2025/06/11 Re: [I] Howto install/run ctakes-4.0.0.1 on a Linux server as a service [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: No output from DrugNerAnnotator [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: No output from DrugNerAnnotator [ctakes] via GitHub
• 2025/06/11 Re: [I] Howto install/run ctakes-4.0.0.1 on a Linux server as a service [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: cTAKES running slower with each run [ctakes] via GitHub
• 2025/06/11 Re: [I] [Feature]: (CTAKES-12) Upgrade to cTAKES components to latest [ctakes] via GitHub
• 2025/06/11 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/06/11 Re: [I] [Feature]: (CTAKES-12) Upgrade to cTAKES components to latest [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: New website to accompany ctakes 5 release; suggestions requested [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: New website to accompany ctakes 5 release; suggestions requested [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: SVN source structure for Apache cTAKES? [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: SVN source structure for Apache cTAKES? [ctakes] via GitHub
• 2025/06/11 Re: [I] [Question]: cTAKES running slower with each run [ctakes] via GitHub
• 2025/06/11 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/06/11 Re: [I] [Bug]: Starting to look at 5.0 repo and found this... [ctakes] via GitHub
• 2025/06/11 Re: [I] [Bug]: Error: Annotator processing failed when running "ApacheConDemoRelation.piper" with UMLS 2025AA default dictionary [ctakes] via GitHub
• 2025/06/11 (ctakes) branch main updated: Attempt to fix https://github.com/apache/ctakes/issues/70 . Swapped uima getLogger() calls with ctakes LoggerFactory.getLogger() constant. ctakes uses a modified LoggerFactory in place of the slf4j LoggerFactory. seanfinan
• 2025/06/11 Re: [I] [Bug]: Error: Annotator processing failed when running "ApacheConDemoRelation.piper" with UMLS 2025AA default dictionary [ctakes] via GitHub
• 2025/06/10 [I] [Bug]: Error: Annotator processing failed when running "ApacheConDemoRelation.piper" with UMLS 2025AA default dictionary [ctakes] via GitHub
• 2025/06/09 Re: [I] [Bug]: Not able to run ctakes after compile with Maven in Vscode on Windows [ctakes] via GitHub
• 2025/06/09 (ctakes) branch main updated: Fixed markdown for Important seanfinan
• 2025/06/09 (ctakes) branch main updated: Improved getting started for new developers. seanfinan
• 2025/06/08 Re: [I] [Bug]: Not able to run ctakes after compile with Maven in Vscode on Windows [ctakes] via GitHub
• 2025/06/08 Re: [I] [Bug]: Not able to run ctakes after compile with Maven in Vscode on Windows [ctakes] via GitHub
• 2025/06/08 [I] [Bug]: Not able to run ctakes after compile with Maven in Vscode on Windows [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: It is Official! Steps toward a cTAKES 5.0 release. [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: It is Official! Steps toward a cTAKES 5.0 release. [ctakes] via GitHub
• 2025/04/28 [I] [Question]: It is Official! Steps toward a cTAKES 5.0 release. [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Which repo is the repo I should be reaping from? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Which repo is the repo I should be reaping from? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Which repo is the repo I should be reaping from? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Which repo is the repo I should be reaping from? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Which repo is the repo I should be reaping from? [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Which repo is the repo I should be reaping from? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Crash course in cTakes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Issuing compiling from the main branch using github [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Issuing compiling from the main branch using github [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Issuing compiling from the main branch using github [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Issuing compiling from the main branch using github [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: Issuing compiling from the main branch using github [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: CUI Question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: CUI Question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: CUI Question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: CUI Question [ctakes] via GitHub
• 2025/04/28 [I] [Question]: CUI Question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Apache cTAKES is now on GitHub ! [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Apache cTAKES is now on GitHub ! [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Apache cTAKES is now on GitHub ! [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Apache cTAKES is now on GitHub ! [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Apache cTAKES is now on GitHub ! [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: cTAKES running slower with each run [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: cTAKES running slower with each run [ctakes] via GitHub
• 2025/04/28 [I] [Question]: cTAKES running slower with each run [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: cTAKES questions [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: cTAKES questions [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: cTAKES questions [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: cTAKES questions [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: What's new in 5.0 && testing JDK 11 [ctakes] via GitHub
• 2025/04/28 [I] [Question]: What's new in 5.0 && testing JDK 11 [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: What's new in 5.0 && testing JDK 11 [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: cTAKES build change, javac [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: cTAKES build change, javac [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: cTAKES build change, javac [ctakes] via GitHub
• 2025/04/28 [I] [Question]: cTAKES build change, javac [ctakes] via GitHub
• 2025/04/28 [I] [Question]: New website to accompany ctakes 5 release; suggestions requested [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Feature]: Mailing list threading improvements [ctakes] via GitHub
• 2025/04/28 [I] [Feature]: Mailing list threading improvements [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Initial CTakes analysis [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Building 2023AA Snomed RxNorm dictionary fails [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Building 2023AA Snomed RxNorm dictionary fails [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: Building 2023AA Snomed RxNorm dictionary fails [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Discrepancy in cTAKES Identification of 'Chemotherapy' SNOMED Codes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Discrepancy in cTAKES Identification of 'Chemotherapy' SNOMED Codes [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Discrepancy in cTAKES Identification of 'Chemotherapy' SNOMED Codes [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Starting to look at 5.0 repo and found this... [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: Starting to look at 5.0 repo and found this... [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: Compilation Errors and the context.tokenizer [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: PREFTERMs not included in UMLS rare-word dictionary? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: PREFTERMs not included in UMLS rare-word dictionary? [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: PREFTERMs not included in UMLS rare-word dictionary? [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Examining Ctakes 5.0 - two sides of the same question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Examining Ctakes 5.0 - two sides of the same question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Examining Ctakes 5.0 - two sides of the same question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Examining Ctakes 5.0 - two sides of the same question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Examining Ctakes 5.0 - two sides of the same question [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Examining Ctakes 5.0 - two sides of the same question [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 [I] [Bug]: Build issues [ctakes] via GitHub
• 2025/04/28 [I] [Feature]: intro and contributing to ctakes-ytex [ctakes] via GitHub
• 2025/04/28 Re: [I] [Question]: Changes to the Assertion-Zoner [ctakes] via GitHub
• 2025/04/28 [I] [Question]: Changes to the Assertion-Zoner [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Resending without attachments [ctakes] via GitHub
• 2025/04/28 Re: [I] [Bug]: Resending without attachments [ctakes] via GitHub

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