Johnsd11 commented on issue #61: URL: https://github.com/apache/ctakes/issues/61#issuecomment-2835986873
Good questions. Unfortunately, I can't really say what is going on as it seems that a lot of the information is in your images - 1000 words and all that. Unfortunately, attachments and inserted images will not go through the dev@ email system. Please copy/paste some plain text in this thread and we will try to help you. The first "NOCODE" item might come from a table name mismatch in the database, e.g. "ICD-9" vs. "ICD_9", but that is a shot in the dark. The second issue that you report is more concerning. You are correct in that it is unexpected and most likely not a great thing to have happening. Just in case it makes things easier, you can use another method for getting cuis. For instance, add the SemanticTableFileWriter to the end of your pipeline. It will write one file per note and accepts standard fileWriter parameter "SubDirectory", plus values for parameter "TableType": BSV, CSV, HTML, TAB. -- This is an automated message from the Apache Git Service. To respond to the message, please log on to GitHub and use the URL above to go to the specific comment. To unsubscribe, e-mail: [email protected] For queries about this service, please contact Infrastructure at: [email protected]
