svn commit: r1636656 - /ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java

[clin]

Author: clin
Date: Tue Nov  4 17:26:47 2014
New Revision: 1636656

URL: http://svn.apache.org/r1636656
Log:
allow event-event evaluation script to only serialize test patients' xmis

Modified:
    
ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java

Modified: 
ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java
URL: 
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java?rev=1636656&r1=1636655&r2=1636656&view=diff
==============================================================================
--- 
ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java
 (original)
+++ 
ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java
 Tue Nov  4 17:26:47 2014
@@ -169,7 +169,7 @@ EvaluationOfTemporalRelations_ImplBase{
                                        options.getUseGoldAttributes(),
                                        options.getKernelParams(),
                                        params);
-                       evaluation.prepareXMIsFor(patientSets);
+//                     evaluation.prepareXMIsFor(patientSets);
                        if(options.getI2B2Output()!=null) 
evaluation.setI2B2Output(options.getI2B2Output() + 
"/temporal-relations/event-event");
                        List<Integer> training = trainItems;
                        List<Integer> testing = null;
@@ -181,6 +181,11 @@ EvaluationOfTemporalRelations_ImplBase{
                        }
                        //do closure on system, but not on gold, to calculate 
recall
                        evaluation.skipTrain = options.getSkipTrain();
+                       if(evaluation.skipTrain && options.getTest()){
+                               evaluation.prepareXMIsFor(testing);
+                       }else{
+                               evaluation.prepareXMIsFor(patientSets);
+                       }
                        params.stats = evaluation.trainAndTest(training, 
testing);//training);//
                        //      System.err.println(options.getKernelParams() == 
null ? params : options.getKernelParams());
                        System.err.println("No closure on gold::Closure on 
System::Recall Mode");
@@ -371,11 +376,11 @@ EvaluationOfTemporalRelations_ImplBase{
                                        GOLD_VIEW_NAME,
                                        CAS.NAME_DEFAULT_SOFA
                                        );
-                       outf =  new 
File("target/eval/thyme/SystemError_eventEvent_recall_UMLSsingle_dev.txt");
+                       outf =  new 
File("target/eval/thyme/SystemError_eventEvent_recall_test.txt");
                }else if (!recallModeEvaluation && this.useClosure){
-                       outf =  new 
File("target/eval/thyme/SystemError_eventEvent_precision_UMLSsingle_dev.txt");
+                       outf =  new 
File("target/eval/thyme/SystemError_eventEvent_precision_test.txt");
                }else{
-                       outf =  new 
File("target/eval/thyme/SystemError_eventEvent_plain_UMLSsingle_dev.txt");
+                       outf =  new 
File("target/eval/thyme/SystemError_eventEvent_plain_test.txt");
                }
 
                PrintWriter outDrop =null;