Author: chenpei
Date: Wed Nov 5 20:38:22 2014
New Revision: 1636952
URL: http://svn.apache.org/r1636952
Log:
CTAKES-326 - Defaulting to the new clearTK based Assertion annotators.
Modified:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
Modified:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
(original)
+++
ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
Wed Nov 5 20:38:22 2014
@@ -114,7 +114,7 @@
<nameValuePair>
<name>classifierJarPath</name>
<value>
-
<string>org/apache/ctakes/assertion/models/generic/model.jar</string>
+
<string>/org/apache/ctakes/assertion/models/generic/model.jar</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
(original)
+++
ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
Wed Nov 5 20:38:22 2014
@@ -114,7 +114,7 @@
<nameValuePair>
<name>classifierJarPath</name>
<value>
-
<string>org/apache/ctakes/assertion/models/historyOf/model.jar</string>
+
<string>/org/apache/ctakes/assertion/models/historyOf/model.jar</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
(original)
+++
ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
Wed Nov 5 20:38:22 2014
@@ -120,7 +120,7 @@
<nameValuePair>
<name>classifierJarPath</name>
<value>
-
<string>org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar</string>
+
<string>/org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
(original)
+++
ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
Wed Nov 5 20:38:22 2014
@@ -120,7 +120,7 @@
<nameValuePair>
<name>classifierJarPath</name>
<value>
-
<string>org/apache/ctakes/assertion/models/subject/model.jar</string>
+
<string>/org/apache/ctakes/assertion/models/subject/model.jar</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
(original)
+++
ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
Wed Nov 5 20:38:22 2014
@@ -120,7 +120,7 @@
<nameValuePair>
<name>classifierJarPath</name>
<value>
-
<string>org/apache/ctakes/assertion/models/uncertainty/model.jar</string>
+
<string>/org/apache/ctakes/assertion/models/uncertainty/model.jar</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified:
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
(original)
+++
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
Wed Nov 5 20:38:22 2014
@@ -158,8 +158,8 @@ Includes adjusting NP chunks to include
<!-- <node>AssertionAnnotator</node> -->
<!-- <node>StatusAnnotator</node> -->
<!-- <node>NegationAnnotator</node> -->
- <node>GenericCleartkAnalysisEngine"></node>
- <node>HistoryCleartkAnalysisEngine"></node>
+ <node>GenericCleartkAnalysisEngine</node>
+ <node>HistoryCleartkAnalysisEngine</node>
<node>PolarityCleartkAnalysisEngine</node>
<node>SubjectCleartkAnalysisEngine</node>
<node>UncertaintyCleartkAnalysisEngine</node>
Modified:
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml?rev=1636952&r1=1636951&r2=1636952&view=diff
==============================================================================
---
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
(original)
+++
ctakes/trunk/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
Wed Nov 5 20:38:22 2014
@@ -169,8 +169,8 @@ and requires an UMLS license. Please up
<!-- <node>AssertionAnnotator</node> -->
<!-- <node>StatusAnnotator</node> -->
<!-- <node>NegationAnnotator</node> -->
- <node>GenericCleartkAnalysisEngine"></node>
- <node>HistoryCleartkAnalysisEngine"></node>
+ <node>GenericCleartkAnalysisEngine</node>
+ <node>HistoryCleartkAnalysisEngine</node>
<node>PolarityCleartkAnalysisEngine</node>
<node>SubjectCleartkAnalysisEngine</node>
<node>UncertaintyCleartkAnalysisEngine</node>
