Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Rela.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Rela.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Rela.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Rela.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,970 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.abbreviation; + +import java.util.Arrays; + +/** + * Relationship Attribute + * https:// www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html + * + * @author SPF , chip-nlp + * @version %I% + * @since 12/18/2018 + */ +public enum Rela { + abnormal_cell_affected_by_chemical_or_drug, // abnormal cell affected by chemical or drug + abnormality_associated_with_allele, // abnormality associated with allele + access_device_used_by, // Access device used by + access_instrument_of, // Access instrument of + access_of, // Access of + active_ingredient_of, // Active ingredient of + active_metabolites_of, // Active metabolites of + active_moiety_of, // Active Moiety of + activity_of_allele, // activity of allele + actual_outcome_of, // Actual outcome of + add_on_code_for, // Add on code for (Report with) + adheres_to, // Adheres to + adjacent_to, // Adjacent to + adjectival_form_of, // Adjectival form of + adjustment_of, // Adjustment of + afferent_to, // Afferent to + alias_of, // Alias_of + allele_absent_from_wild_type_chromosomal_location( "allele_absent_from_wild-type_chromosomal_location" ), // allele absent from wild-type chromosomal location + allele_has_abnormality, // allele has abnormality + allele_has_activity, // allele has activity + allele_in_chromosomal_location, // allele in chromosomal location + allele_plays_altered_role_in_process, // allele plays altered role in process + allele_plays_role_in_metabolism_of_chemical_or_drug, // allele plays role in metabolism of chemical or drug + allelic_variant_of, // Allelic Variant of + alternative_of, // Alternative of + analyzed_by, // Analyzed by + analyzes, // Analyzes + anatomic_structure_has_location, // anatomic structure has location + anatomic_structure_is_physical_part_of, // anatomic structure is physical part of + anatomical_entity_observed_in, // anatomical entity observed in + anatomy_originated_from_biological_process, // anatomy originated from biological process + answer_to, // answer to + anterior_to, // anterior to + anteroinferior_to, // anteroinferior to + anterolateral_to, // anterolateral to + anteromedial_to, // anteromedial to + anterosuperior_to, // anterosuperior to + approach_of_excluded, // Approach of excluded + approach_of_possibly_included, // Approach of possibly included + approach_of, // Approach of + arterial_supply_of, // Arterial supply of + articulates_with, // Articulates with + associated_condition_of, // Associated condition of + associated_disease, // Associated disease + associated_etiologic_finding_of, // Associated etiologic finding of + associated_finding_of_excluded, // Associated finding of excluded + associated_finding_of_possibly_included, // Associated finding of possibly included + associated_finding_of, // Associated finding of + associated_function_of, // Associated function of + associated_genetic_condition, // Associated genetic condition + associated_morphology_of, // Associated morphology of + associated_procedure_of_excluded, // Associated procedure of excluded + associated_procedure_of_possibly_included, // Associated procedure of possibly included + associated_procedure_of, // Associated procedure of + associated_with_malfunction_of_gene_product, // associated with malfunction of gene product + associated_with, // Associated with + attaches_to, // Attaches to + basic_dose_form_of, // Basic dose form of + basis_of_strength_substance_of, // Basis of strength substance of + biological_process_has_associated_location, // biological process has associated location + biological_process_has_initiator_chemical_or_drug, // biological process has initiator chemical or drug + biological_process_has_initiator_process, // biological process has initiator process + biological_process_has_result_anatomy, // biological process has result anatomy + biological_process_has_result_biological_process, // biological process has result biological process + biological_process_has_result_chemical_or_drug, // biological process has result chemical or drug + biological_process_involves_chemical_or_drug, // biological process involves chemical or drug + biological_process_involves_gene_product, // biological process involves gene product + biological_process_is_part_of_process, // biological process is part of process + biological_process_results_from_biological_process, // biological process results from biological process + biomarker_type_includes_gene_product, // biomarker type includes gene product + biomarker_type_includes_gene, // biomarker type includes gene + bounded_by, // Bounded by + bounds, // Bounds + branch_of, // Branch of + british_form_of, // British form of + causative_agent_of, // Causative agent of + cause_of, // Cause of + cdrh_parent_of, // cdrh parent of + cell_type_is_associated_with_eo_disease, // cell type is associated with eo disease + cell_type_or_tissue_affected_by_chemical_or_drug, // cell type or tissue affected by chemical or drug + challenge_of, // Challenge of + characterized_by, // Characterized by + characterizes, // Characterizes + chemical_or_drug_affects_abnormal_cell, // chemical or drug affects abnormal cell + chemical_or_drug_affects_cell_type_or_tissue, // chemical or drug affects cell type or tissue + chemical_or_drug_affects_gene_product, // chemical or drug affects gene product + chemical_or_drug_has_mechanism_of_action, // chemical or drug has mechanism of action + chemical_or_drug_has_physiologic_effect, // chemical or drug has physiologic effect + chemical_or_drug_initiates_biological_process, // chemical or drug initiates biological process + chemical_or_drug_is_metabolized_by_enzyme, // chemical or drug is metabolized by enzyme + chemical_or_drug_is_product_of_biological_process, // chemical or drug is product of biological process + chemical_or_drug_metabolism_is_associated_with_allele, // chemical or drug metabolism is associated with allele + chemical_or_drug_plays_role_in_biological_process, // chemical or drug plays role in biological process + chemical_structure_of, // Chemical structure of + chemotherapy_regimen_has_component, // chemotherapy regimen has component + chromosomal_location_of_allele, // chromosomal location of allele + chromosomal_location_of_wild_type_gene( "chromosomal_location_of_wild-type_gene" ), // chromosomal location of wild-type gene + chromosome_involved_in_cytogenetic_abnormality, // chromosome involved in cytogenetic abnormality + chromosome_mapped_to_disease, // chromosome mapped to disease + class_code_classified_by, // Class code classified by + class_of, // Class of + classified_as, // Classified as + classifies_class_code, // Classifies class code + classifies, // Classifies + clinical_course_of, // Clinical course of + clinically_associated_with, // Clinically associated with + clinically_similar, // Clinically similar + clinician_form_of, // Clinician form of + co_occurs_with( "co-occurs_with" ), // Co-ocurrs with + common_name_of, // common name of + completely_excised_anatomy_has_procedure, // completely excised anatomy has procedure + completely_excised_anatomy_may_have_procedure, // Completely excised anatomy may have procedure + complex_has_physical_part, // complex has physical part + component_of_excluded, // Component of excluded + component_of_possibly_included, // Component of possibly included + component_of, // Component of + concentration_strength_denominator_unit_of, // Concentration strength denominator unit of + concentration_strength_denominator_value_of, // Concentration strength denominator value of + concentration_strength_numerator_unit_of, // Concentration strength numerator unit of + concentration_strength_numerator_value_of, // Concentration strength numerator value of + concept_in_subset, // concept in subset + conceptual_part_of, // Conceptual part of + connected_to, // connected to + connection_type_of, // connection type of + consider_from, // Consider from + consider, // Consider + consists_of, // Consists of + constitutes, // Constitutes + constitutional_part_of, // Constitutional part of + consumer_friendly_form_of, // Consumer friendly form of + contained_in, // Contained in + contains, // Contains + context_binding_of, // Context binding of + continuation_branch_of, // Continuation branch of + continuous_distally_with, // continuous distally with + continuous_proximally_with, // continuous proximally with + continuous_with, // Continuous with + contraindicated_class_of, // Contraindicated class of + contraindicated_mechanism_of_action_of, // Contraindicated mechanism of action of + contraindicated_physiologic_effect_of, // Contraindicated physiologic effect of + contraindicated_with_disease, // Contraindicated with disease + contraindicating_class_of, // Contraindicating class of + contraindicating_mechanism_of_action_of, // Contraindicating mechanism of action of + contraindicating_physiologic_effect_of, // Contraindicating physiologic effect of + corresponds_to, // corresponds to + count_of_base_of_active_ingredient_of, // Count of base of active ingredient of + count_of, // count_of + course_of, // Course of + ctcae_5_parent_of, // ctcae_5 parent of + cytogenetic_abnormality_involves_chromosome, // cytogenetic abnormality involves chromosome + data_element_of, // data element of + ddx, // dxx + default_mapped_from, // Default mapped from + default_mapped_to, // Default mapped to + defining_characteristic_of, // Defining characteristic of + definitional_manifestation_of, // Definitional manifestation of + degree_of, // Degree of + dependent_of, // Dependent of + derives_from, // derives from + derives, // derives + development_type_of, // development type of + developmental_stage_of, // developmental stage of + develops_from, // Develops from + develops_into, // develops into + device_used_by, // Device used by + diagnosed_by, // Diagnosed by + diagnoses, // Diagnoses + diagnostic_criteria_of, // DSM-5 diagnostic criteria for ICD code + direct_cell_shape_of, // direct cell shape of + direct_device_of, // Direct device of + direct_left_of, // direct left of + direct_morphology_of, // Direct morphology of + direct_procedure_site_of, // Direct procedure site of + direct_right_of, // direct right of + direct_site_of, // Direct site of + direct_substance_of, // Direct substance of + disease_excludes_abnormal_cell, // disease excludes abnormal cell + disease_excludes_cytogenetic_abnormality, // disease excludes cytogenetic abnormality + disease_excludes_finding, // disease excludes finding + disease_excludes_molecular_abnormality, // disease excludes molecular abnormality + disease_excludes_normal_cell_origin, // disease excludes normal cell origin + disease_excludes_normal_tissue_origin, // disease excludes normal tissue origin + disease_excludes_primary_anatomic_site, // disease excludes primary anatomic site + disease_has_abnormal_cell, // disease has abnormal cell + disease_has_accepted_treatment_with_regimen, // Disease Has Accepted Treatment With Regimen + disease_has_associated_anatomic_site, // disease has associated anatomic site + disease_has_associated_disease, // disease has associated disease + disease_has_associated_gene, // disease has associated gene + disease_has_cytogenetic_abnormality, // disease has cytogenetic abnormality + disease_has_finding, // disease has finding + disease_has_metastatic_anatomic_site, // disease has metastatic anatomic site + disease_has_molecular_abnormality, // disease has molecular abnormality + disease_has_normal_cell_origin, // disease has normal cell origin + disease_has_normal_tissue_origin, // disease has normal tissue origin + disease_has_primary_anatomic_site, // disease has primary anatomic site + disease_is_grade, // disease is grade + disease_is_marked_by_gene, // disease is marked by gene + disease_is_stage, // disease is stage + disease_mapped_to_chromosome, // disease mapped to chromosome + disease_mapped_to_gene, // Disease mapped to gene + disease_may_have_abnormal_cell, // disease may have abnormal cell + disease_may_have_associated_disease, // disease may have associated disease + disease_may_have_cytogenetic_abnormality, // disease may have cytogenetic abnormality + disease_may_have_finding, // disease may have finding + disease_may_have_molecular_abnormality, // disease may have molecular abnormality + disease_may_have_normal_cell_origin, // disease may have normal cell origin + disposition_of, // Disposition of + distal_to, // distal to + divisor_of, // Divisor of + do_not_code_with, // Do not code with (excludes) + dose_form_administration_method_of, // Dose form administration method of + dose_form_intended_site_of, // Dose form intended site of + dose_form_of, // Dose form of + dose_form_release_characteristic_of, // Dose form release characteristic of + dose_form_transformation_of, // Dose form transformation of + doseformgroup_of, // Dose form group of + drains_into, // drains into + due_to, // Due to + during, // During + effect_may_be_inhibited_by, // Effect may be inhibited by + efferent_to, // Efferent to + endogenous_product_related_to, // Endogenous Product Related To + ends_during, // Ends during + energy_used_by, // Energy used by + entire_anatomy_structure_of, // Entire anatomy structure of + entry_combination_of, // Entry Combination of + entry_version_of, // Entry version of + enzyme_metabolizes_chemical_or_drug, // enzyme metabolizes chemical or drug + eo_anatomy_is_associated_with_eo_disease, // eo anatomy is associated with eo disease + eo_disease_has_associated_cell_type, // eo disease has associated cell type + eo_disease_has_associated_eo_anatomy, // eo disease has associated eo anatomy + eo_disease_has_property_or_attribute, // eo disease has property or attribute + eo_disease_maps_to_human_disease, // eo disease maps to human disease + episodicity_of, // Episodicity of + evaluation_of, // Evaluation of + excised_anatomy_has_procedure, // excised anatomy has procedure + excised_anatomy_may_have_procedure, // excised anatomy may have procedure + exhibited_by, // Exhibited by + exhibits, // Exhibits + expanded_form_of, // Expanded form of + expected_outcome_of, // Expected outcome of + extent_of, // Extent of + external_to, // external to + finding_context_of, // Finding context of + finding_informer_of, // Finding informer of + finding_method_of, // Finding method of + finding_site_of, // Finding site of + focus_of, // Focus of + form_of, // Form of + formed_by, // formed by + forms, // forms + fragments_for_synonyms_of, // Fragments for synonyms of + full_grown_phenotype_of, // full grown phenotype of + fuses_with, // fuses with + fusion_of, // fusion of + gene_associated_with_disease, // gene associated with disease + gene_encodes_gene_product, // gene encodes gene product + gene_found_in_organism, // gene found in organism + gene_has_abnormality, // gene has abnormality + gene_has_physical_location, // gene has physical location + gene_in_chromosomal_location, // gene in chromosomal location + gene_involved_in_molecular_abnormality, // gene involved in molecular abnormality + gene_involved_in_pathogenesis_of_disease, // gene involved in pathogenesis of disease + gene_is_biomarker_of, // gene is biomarker of + gene_is_biomarker_type, // gene is biomarker type + gene_is_element_in_pathway, // gene is element in pathway + gene_mapped_to_disease, // gene mapped to disease + gene_mutant_encodes_gene_product_sequence_variation, // gene mutant encodes gene product sequence variation + gene_plays_role_in_process, // gene plays role in process + gene_product_affected_by_chemical_or_drug, // gene product affected by chemical or drug + gene_product_encoded_by_gene, // gene product encoded by gene + gene_product_expressed_in_tissue, // gene product expressed in tissue + gene_product_has_abnormality, // gene product has abnormality + gene_product_has_associated_anatomy, // gene product has associated anatomy + gene_product_has_biochemical_function, // gene product has biochemical function + gene_product_has_chemical_classification, // gene product has chemical classification + gene_product_has_gene_product_variant, // gene product has gene product variant + gene_product_has_organism_source, // gene product has organism source + gene_product_has_structural_domain_or_motif, // gene product has structural domain or motif + gene_product_is_biomarker_of, // gene product is biomarker of + gene_product_is_biomarker_type, // gene product is biomarker type + gene_product_is_element_in_pathway, // gene product is element in pathway + gene_product_is_physical_part_of, // gene product is physical part of + gene_product_malfunction_associated_with_disease, // gene product malfunction associated with disease + gene_product_plays_role_in_biological_process, // gene product plays role in biological process + gene_product_sequence_variation_encoded_by_gene_mutant, // gene product sequence variation encoded by gene mutant + gene_product_variant_of_gene_product, // gene product variant of gene product + genetic_biomarker_related_to, // genetic biomarker related to + germ_origin_of, // Germ origin of + grade_of, // grade of + happens_during, // Happens during + has_access_instrument, // Has access instrument + has_access, // Has access + has_action_guidance, // Has action guidance + has_active_ingredient, // Has active ingredient + has_active_metabolites, // Has active metabolites + has_active_moiety, // Has Active Moiety + has_actual_outcome, // Has actual outcome + has_add_on_code, // Has add on code (Report with) + has_adherent, // Has adherent + has_adjustment, // Has adjustment + has_aggregation_view, // Has aggregation view + has_alias, // Has alias + has_allelic_variant, // Has allelic variant + has_alternative, // Has alternative + has_answer, // has answer + has_approach_guidance, // Has approach guidance + has_approach, // Has approach + has_arterial_supply, // Has arterial supply + has_associated_condition, // has_associated_condition + has_associated_etiologic_finding, // Has associated etiologic finding + has_associated_finding, // Has associated finding + has_associated_function, // Has associated function + has_associated_morphology, // Has associated morphology + has_associated_procedure, // Has associated procedure + has_at_risk_population, // Has at risk population + has_basic_dose_form, // Has basic dose form + has_basis_of_strength_substance, // Has basis of strength substance + has_branch, // Has branch + has_british_form, // Has British form + has_causative_agent, // Has causative agent + has_cdrh_parent, // has cdrh parent + has_challenge, // Has challenge + has_chemical_structure, // Has chemical structure + has_class, // Has class + has_clinical_course, // Has clinical course + has_clinician_form, // Has clinician form + has_common_name, // Has common name + has_communication_with_wound, // Has communication with wound + has_component, // Has component + has_concentration_strength_denominator_unit, // Has concentration strength denominator unit + has_concentration_strength_denominator_value, // Has concentration strength denominator value + has_concentration_strength_numerator_unit, // Has concentration strength numerator unit + has_concentration_strength_numerator_value, // Has concentration strength numerator value + has_conceptual_part, // Has conceptual part + has_connection_type, // has connection type + has_constitutional_part, // Has constitutional part + has_consumer_friendly_form, // Has consumer friendly form + has_context_binding, // Has context binding + has_continuation_branch, // Has continuation branch + has_contraindicated_class, // Has contraindicated class + has_contraindicated_drug, // Has contraindicated drug + has_contraindicated_mechanism_of_action, // Has contraindicated mechanism of action + has_contraindicated_physiologic_effect, // Has contraindicated physiologic effect + has_contraindicating_class, // Has contraindicating class + has_contraindicating_mechanism_of_action, // Has contraindicating mechanism of action + has_contraindicating_physiologic_effect, // Has contraindicating physiologic effect + has_count_of_base_of_active_ingredient, // Has count of base of active ingredient + has_count, // Has count + has_course, // Has course + has_ctcae_5_parent, // has ctcae_5 parent + has_data_element, // has data element + has_defining_characteristic, // Has defining characteristic + has_definitional_manifestation, // Has definitional manifestation + has_degree, // Has degree + has_dependent, // Has dependent + has_development_type, // has development type + has_developmental_stage, // has developmental stage + has_diagnostic_criteria, // ICD has DSM-5 diagnostic criteria + has_direct_cell_shape, // has direct cell shape + has_direct_device, // Has direct device + has_direct_morphology, // Has direct morphology + has_direct_procedure_site, // Has direct procedure site + has_direct_site, // Has direct site + has_direct_substance, // Has direct substance + has_disposition, // Has disposition + has_divisor, // Has divisor + has_dose_form_administration_method, // Has dose form administration method + has_dose_form_intended_site, // Has dose form intended site + has_dose_form_release_characteristic, // Has dose form release characteristic + has_dose_form_transformation, // Has dose form transformation + has_dose_form, // Has dose form + has_doseformgroup, // Has dose form group + has_entire_anatomy_structure, // Has entire anatomy structure + has_entry_combination, // Has Entry Combination + has_entry_version, // Has entry version + has_episodicity, // Has episodicity + has_evaluation, // Has evaluation + has_exam, // Has exam + has_excluded_approach, // Has excluded approach + has_excluded_associated_finding, // Has excluded associated finding + has_excluded_associated_procedure, // Has excluded associated procedure + has_excluded_component, // Has excluded component + has_excluded_locale, // Has excluded locale + has_excluded_method, // Has excluded method + has_excluded_pathology, // Has excluded pathology + has_excluded_patient_type, // Has excluded patient type + has_excluded_procedure_device, // Has excluded procedure device + has_excluded_procedure_site, // Has excluded procedure site + has_excluded_route_of_administration, // Has excluded route of administration + has_excluded_specimen, // Has excluded specimen + has_excluded_surgical_extent, // Has excluded surgical extent + has_expanded_form, // Has expanded form + has_expected_outcome, // Has expected outcome + has_extent, // Has extent + has_finding_context, // Has finding context + has_finding_informer, // Has finding informer + has_finding_method, // Has finding method + has_finding_site, // Has finding_site + has_focus, // Has focus + has_form, // Has form + has_fragments_for_synonyms, // Has fragments for synonyms + has_free_acid_or_base_form, // has free acid or base form + has_full_grown_phenotype, // has full grown phenotype + has_fusion, // has fusion + has_gene_product_element, // has gene product element + has_germ_origin, // Has germ origin + has_given_pharmaceutical_substance, // Has given pharmaceutical substance + has_grade, // has grade + has_imaged_location, // Has imaged location + has_imaging_focus, // Has imaging focus + has_inactive_ingredient, // Has Inactive Ingredient + has_indirect_device, // Has indirect device + has_indirect_morphology, // Has indirect morphology + has_indirect_procedure_site, // Has indirect procedure site + has_ingredients, // Has ingredients + has_ingredient, // Has ingredient + has_inherent_3d_shape, // Has inherent 3-D shape + has_inherent_attribute, // Has inherent attribute + has_inherent_location, // Has inherent location + has_inheritance_type, // Has inheritance type + has_insertion, // has insertion + has_instrumentation, // Has instrumentation + has_intent, // Has intent + has_interpretation, // Has interpretation + has_lab_number, // Has lab number + has_lateral_anatomic_location, // Has lateral anatomic location + has_lateral_location_presence, // Has lateral location presence + has_laterality, // Has laterality + has_life_circumstance, // Has life circumstance + has_locale, // Has locale + has_location, // Has location + has_lymphatic_drainage, // Has lymphatic drainage + has_maneuver_type, // has maneuver type + has_manifestation, // Has manifestation + has_mapping_qualifier, // Has mapping qualifier + has_measured_component, // has_measured_component + has_measurement_method, // Has measurement method + has_mechanism_of_action, // Has mechanism of action + has_member, // Has member + has_method, // Has method + has_modality_subtype, // Has modality subtype + has_modality_type, // has modality type + has_modification, // Has modification + has_multi_level_category, // Has multi-level category + has_multipart, // Has multipart + has_nerve_supply, // Has nerve supply + has_nichd_parent, // has nichd parent + has_object_guidance, // Has object guidance + has_observed_anatomical_entity, // has observed anatomical entity + has_occurrence, // Has occurrence + has_onset, // Has onset + has_origin, // Has origin + has_owning_affiliate, // Has owning affiliate + has_owning_section, // Has owning section + has_owning_subsection, // Has owning subsection + has_panel_element, // CPT laboratory panel code has laboratory panel test member + has_parent, // Has parent + has_part_anatomy_structure, // Has part anatomy structure + has_part, // Has part + has_pathological_process, // Has pathological process + has_pathology, // Has pathology + has_patient_type, // Has patient type + has_permuted_term, // Has permuted term + has_pharmaceutical_route, // Has_pharmaceutical_route + has_pharmacokinetics, // Has pharmacokinetics + has_phenotype, // Has phenotype + has_physical_part_of_anatomic_structure, // has physical part of anatomic structure + has_physiologic_effect, // Has physiologic effect + has_physiologic_state, // Has physiologic state + has_plain_text_form, // Has plain text form + has_possibly_included_approach, // Has possibly included approach + has_possibly_included_associated_finding, // Has possibly included associated finding + has_possibly_included_associated_procedure, // Has possibly included associated procedure + has_possibly_included_component, // Has possibly included component + has_possibly_included_method, // Has possibly included method + has_possibly_included_panel_element, // CPT laboratory panel code has possibly included laboratory panel test member + has_possibly_included_pathology, // Has possibly included pathology + has_possibly_included_patient_type, // Has possibly included patient type + has_possibly_included_procedure_device, // Has possibly included procedure device + has_possibly_included_procedure_site, // Has possibly included procedure site + has_possibly_included_route_of_administration, // Has possibly included route of administration + has_possibly_included_surgical_extent, // Has possibly included surgical extent + has_precise_active_ingredient, // Has precise active ingredient + has_precise_ingredient, // Has precise ingredient + has_precondition, // Has precondition + has_presence_guidance, // Has presence guidance + has_presentation_strength_denominator_unit, // Has presentation strength denominator unit + has_presentation_strength_denominator_value, // Has presentation strength denominator value + has_presentation_strength_numerator_unit, // Has presentation strength numerator unit + has_presentation_strength_numerator_value, // Has presentation strength numerator value + has_primary_segmental_supply, // Has primary segmental supply + has_print_name, // Has print name + has_priority, // Has priority + has_procedure_context, // Has procedure context + has_procedure_device, // Has procedure device + has_procedure_morphology, // Has procedure morphology + has_procedure_site, // Has procedure site + has_process_output, // Has process output + has_product_component, // Has product component + has_product_monograph_title, // has product monograph title + has_projection, // has projection + has_property_type, // Has property type + has_property, // Has property + has_quantified_form, // Has quantified form + has_quotient, // Has quotient + has_recipient_category, // Has recipient category + has_regional_part, // Has regional part + has_related_developmental_entity, // has related developmental entity + has_related_factor, // Has related factor + has_result, // Has result + has_revision_status, // Has revision status + has_risk_factor, // Has risk factor + has_route_of_administration, // Has route of administration + has_salt_form, // has salt form + has_scale_type, // Has scale type + has_scale, // Has scale + has_secondary_segmental_supply, // Has secondary segmental supply + has_segmental_composition, // Has segmental composition + has_segmental_supply, // Has segmental supply + has_severity, // Has severity + has_sign_or_symptom, // Has sign or symptom + has_single_level_category, // Has single level category + has_sort_version, // Has sort version + has_specialty, // Has specialty + has_specimen_procedure, // Has specimen procedure + has_specimen_source_identity, // Has specimen source identity + has_specimen_source_morphology, // Has specimen source morphology + has_specimen_source_topography, // Has specimen source topography + has_specimen_substance, // Has specimen substance + has_specimen, // Has specimen + has_stage, // Has stage + has_state_of_matter, // Has state of matter + has_structural_class, // Has structural class + has_subject_of_information, // Has subject of information + has_subject_relationship_context, // Has subject relationship context + has_subject, // Has subject + has_suffix, // Has suffix + has_supersystem, // Has supersystem + has_supported_concept_property, // Has supported concept property + has_supported_concept_relationship, // Has supported concept relationship + has_surgical_approach, // has surgical approach + has_surgical_extent, // Has surgical extent + has_system, // Has system + has_target, // has target + has_technique, // Has technique + has_temporal_context, // Has temporal context + has_therapeutic_class, // Has therapeutic class + has_time_aspect, // Has time aspect + has_time_modifier, // Has time modifier + has_timing_of, // Has timing of + has_tradename, // Has tradename + has_translation, // Has translation + has_transliterated_form, // Has transliterated form + has_tributary, // Has tributary + has_unit_of_presentation, // Has unit of presentation + has_venous_drainage, // Has venous drainage + has_version, // Has version + has_view_type, // Has view type + homonym_for, // Homonym for + homonym_of, // Homonym of + human_disease_maps_to_eo_disease, // human disease maps to eo disease + icd_asterisk, // ICD asterisk + icd_dagger, // ICD dagger + imaged_anatomy_has_procedure, // imaged anatomy has procedure + inactive_ingredient_of, // Inactive Ingredient Of + included_in, // included_in + includes_sub_specimen, // Includes sub specimen + includes, // includes + indirect_device_of, // Indirect device of + indirect_morphology_of, // Indirect morphology of + indirect_procedure_site_of, // Indirect procedure site of + induced_by, // Induced by + induces, // Induces + inferior_to, // inferior to + inferolateral_to, // inferolateral to + inferomedial_to, // inferomedial to + ingredient_of, // Ingredient of + ingredients_of, // Ingredients of + inherent_3d_shape_of, // Inherent 3-D shape of + inherent_location_of, // Inherent location of + inheres_in, // Inheres in + inheritance_type_of, // Inheritance type of + insertion_of, // insertion of + instrumentation_of, // Instrumentation of + intent_of, // Intent of + internal_to, // internal to + interpretation_of, // Interpretation of + interprets, // Interprets + inverse_during, // Inverse during + inverse_ends_during, // Inverse ends during + inverse_happens_during, // Inverse happens during + inverse_isa, // Inverse is a + inverse_was_a, // Inverse was a + is_abnormal_cell_of_disease, // is abnormal cell of disease + is_abnormality_of_gene_product, // is abnormality of gene product + is_abnormality_of_gene, // is abnormality of gene + is_action_guidance_for, // Is action guidance for + is_aggregation_view_of, // Is aggregation view of + is_approach_guidance_for, // Is approach guidance for + is_associated_anatomic_site_of, // is associated anatomic site of + is_associated_anatomy_of_gene_product, // is associated anatomy of gene product + is_associated_disease_of, // is associated disease of + is_biochemical_function_of_gene_product, // is biochemical function of gene product + is_chemical_classification_of_gene_product, // is chemical classification of gene product + is_chromosomal_location_of_gene, // is chromosomal location of gene + is_component_of_chemotherapy_regimen, // is component of chemotherapy regimen + is_cytogenetic_abnormality_of_disease, // is cytogenetic abnormality of disease + is_exam_for, // Is exam for + is_finding_of_disease, // is finding of disease + is_given_pharmaceutical_substance_for, // Is given pharmaceutical substance for + is_grade_of_disease, // is grade of disease + is_imaged_location_for, // Is imaged location for + is_imaging_focus_of, // Is imaging focus of + is_interpreted_by, // Is interpreted by + is_lateral_anatomic_location_of, // Is lateral anatomic location of + is_location_of_anatomic_structure, // is location of anatomic structure + is_location_of_biological_process, // is location of biological process + is_maneuver_type_for, // Is maneuver type for + is_marked_by_gene_product, // is marked by gene product + is_mechanism_of_action_of_chemical_or_drug, // is mechanism of action of chemical or drug + is_metastatic_anatomic_site_of_disease, // is metastatic anatomic site of disease + is_modality_subtype_for, // Is modality subtype for + is_modality_type_for, // Is modality type for + is_modification_of, // Is modification of + is_molecular_abnormality_of_disease, // is molecular abnormality of disease + is_normal_cell_origin_of_disease, // is normal cell origin of disease + is_normal_tissue_origin_of_disease, // is normal tissue origin of disease + is_not_abnormal_cell_of_disease, // is not abnormal cell of disease + is_not_cytogenetic_abnormality_of_disease, // is not cytogenetic abnormality of disease + is_not_finding_of_disease, // is not finding of disease + is_not_molecular_abnormality_of_disease, // is not molecular abnormality of disease + is_not_normal_cell_origin_of_disease, // is not normal cell origin of disease + is_not_normal_tissue_origin_of_disease, // is not normal tissue origin of disease + is_not_primary_anatomic_site_of_disease, // is not primary anatomic site of disease + is_object_guidance_for, // Is object guidance for + is_organism_source_of_gene_product, // is organism source of gene product + is_pharmaceutical_route_for, // Is pharmaceutical route for + is_physical_location_of_gene, // is physical location of gene + is_physiologic_effect_of_chemical_or_drug, // is physiologic effect of chemical or drug + is_presence_guidance_for, // Is presence guidance for + is_presence_of_lateral_location, // Is presence of lateral location + is_primary_anatomic_site_of_disease, // is primary anatomic site of disease + is_property_or_attribute_of_eo_disease, // is property or attribute of eo disease + is_qualified_by, // is qualified by + is_related_to_endogenous_product, // Is Related To Endogenous Product + is_stage_of_disease, // is stage of disease + is_structural_domain_or_motif_of_gene_product, // is structural domain or motif of gene product + is_subject_of, // Is subject of + is_target, // is target + is_timing_for, // Is timing for + is_view_type_for, // Is view type for + isa, // Is a + kind_is_domain_of, // kind is domain of + kind_is_range_of, // kind is range of + lab_number_of, // Lab number + larger_than, // Larger Than + lateral_to, // lateral to + laterality_of, // Laterality of + left_lateral_to, // left lateral to + left_medial_to, // left medial to + life_circumstance_of, // Life circumstance of + locale_of_excluded, // Locale of excluded + locale_of, // Locale of + location_of, // Location of + lymphatic_drainage_of, // Lymphatic drainage of + manifestation_of, // Manifestation of + manufactured_by, // manufactured by + manufactures, // manufactures + mapped_from, // Mapped from + mapped_to, // Mapped to + mapping_qualifier_of, // Mapping qualifier of + matures_from, // matures from + matures_into, // matures into + may_be_abnormal_cell_of_disease, // may be abnormal cell of disease + may_be_associated_disease_of_disease, // may be associated disease of disease + may_be_cytogenetic_abnormality_of_disease, // may be cytogenetic abnormality of disease + may_be_diagnosed_by, // May be diagnosed by + may_be_finding_of_disease, // may be finding of disease + may_be_molecular_abnormality_of_disease, // may be molecular abnormality of disease + may_be_normal_cell_origin_of_disease, // may be normal cell origin of disease + may_be_prevented_by, // May be prevented by + may_be_qualified_by, // May be qualified by + may_be_treated_by, // May be treated by + may_diagnose, // May diagnose + may_inhibit_effect_of, // May inhibit effect of + may_prevent, // May prevent + may_qualify, // May qualify + may_treat, // May treat + measured_by, // Measured by + measured_component_of, // measured_component_of + measurement_method_of, // Measurement method of + measures, // Measures + mechanism_of_action_of, // Mechanism of action of + medial_to, // medial to + member_of, // Member of + merges_with, // merges with + metabolic_site_of, // Metabolic site of + method_of_excluded, // Method of excluded + method_of_possibly_included, // Method of possibly included + method_of, // Method of + modified_by, // Modified by + modifies, // Modifies + molecular_abnormality_involves_gene, // molecular abnormality involves gene + moved_from, // Moved from + moved_to, // Moved to + mth_british_form_of, // MTH British form of + mth_expanded_form_of, // MTH expanded form of + mth_has_british_form, // MTH has British form + mth_has_expanded_form, // MTH has expanded form + mth_has_plain_text_form, // Has plain text form, Metathesaurus-asserted + mth_has_xml_form, // Has XML form, Metathesaurus-asserted + mth_plain_text_form_of, // Plain text form of, Metathesaurus-asserted + mth_xml_form_of, // XML form of, Metathesaurus-asserted + multipart_of, // Multipart of + multiply_mapped_from, // Multiply mapped from + multiply_mapped_to, // Multiply mapped to + negatively_regulated_by, // Negatively regulated by + negatively_regulates, // Negatively regulates + neoplasm_has_special_category, // neoplasm has special category + nerve_supply_of, // Nerve supply of + nichd_parent_of, // nichd parent of + noun_form_of, // Noun form of + occurs_after, // Occurs after + occurs_before, // Occurs before + occurs_in, // Occurs in + onset_of, // Onset of + organism_has_gene, // organism has gene + origin_of, // Origin of + other_mapped_from, // Other mapped from + other_mapped_to, // Other mapped to + owning_affiliate_of, // Owning affiliate of + owning_section_of, // Owning section of + owning_subsection_of, // Owning subsection of + panel_element_of_possibly_included, // CPT laboratory panel test member is possibly included element of laboratory code + panel_element_of, // CPT laboratory panel test member is element of laboratory code + parent_of, // Parent of + part_anatomy_structure_of, // Part anatomy structure of + part_of, // Part of + part_referred_to_by, // Part referred to by + partially_excised_anatomy_has_procedure, // partially excised anatomy has procedure + partially_excised_anatomy_may_have_procedure, // partially excised anatomy may have procedure + pathogenesis_of_disease_involves_gene, // pathogenesis of disease involves gene + pathological_process_of, // Pathological process of + pathology_of_excluded, // Pathology of excluded + pathology_of_possibly_included, // Pathology of possibly included + pathology_of, // Pathology of + pathway_has_gene_element, // pathway has gene element + patient_type_of_excluded, // Patient type of excluded + patient_type_of_possibly_included, // Patient type of possibly included + patient_type_of, // Patient type of + permuted_term_of, // Permuted term of + pharmacokinetics_of, // Pharmacokinetics of + phenotype_of, // Phenotype of + physiologic_effect_of, // Physiologic effect of + physiologic_state_of, // Physiologic state of + plain_text_form_of, // Plain text form of + population_at_risk_for, // Population at risk for + positively_regulated_by, // Positively regulated by + positively_regulates, // Positively regulates + possibly_equivalent_to, // Possibly equivalent to + posterior_to, // posterior to + posteroinferior_to, // posteroinferior to + posterolateral_to, // posterolateral to + posteromedial_to, // posteromedial to + posterosuperior_to, // posterosuperior to + precise_active_ingredient_of, // Precise active ingredient of + precise_ingredient_of, // Precise ingredient of + precondition_of, // Precondition of + presentation_strength_denominator_unit_of, // Presentation strength denominator unit of + presentation_strength_denominator_value_of, // Presentation strength denominator value of + presentation_strength_numerator_unit_of, // Presentation strength numerator unit of + presentation_strength_numerator_value_of, // Presentation strength numerator value of + primary_mapped_from, // Primary mapped from + primary_mapped_to, // Primary mapped to + primary_segmental_supply_of, // Primary segmental supply of + print_name_of, // Print name of + priority_of, // Priority of + procedure_context_of, // Procedure context of + procedure_device_of_excluded, // Procedure device of excluded + procedure_device_of_possibly_included, // Procedure device of possibly included + procedure_device_of, // Procedure device of + procedure_has_completely_excised_anatomy, // procedure has completely excised anatomy + procedure_has_excised_anatomy, // procedure has excised anatomy + procedure_has_imaged_anatomy, // procedure has imaged anatomy + procedure_has_partially_excised_anatomy, // procedure has partially excised anatomy + procedure_has_target_anatomy, // procedure has target anatomy + procedure_may_have_completely_excised_anatomy, // procedure may have completely excised anatomy + procedure_may_have_excised_anatomy, // procedure may have excised anatomy + procedure_may_have_partially_excised_anatomy, // procedure may have partially excised anatomy + procedure_morphology_of, // Procedure morphology of + procedure_site_of_excluded, // Procedure site of excluded + procedure_site_of_possibly_included, // Procedure site of possibly included + procedure_site_of, // Procedure site of + process_altered_by_allele, // process altered by allele + process_includes_biological_process, // process includes biological process + process_initiates_biological_process, // process initiates biological process + process_involves_gene, // process involves gene + process_output_of, // Process output of + product_component_of, // Product component of + product_monograph_title_of, // product monograph title of + projects_from, // projects from + projects_to, // projects to + property_of, // Property of + property_type_of, // Property type of + proximal_to, // proximal to + qualifier_applies_to, // qualifier applies to + quantified_form_of, // Quantified form of + quotient_of, // Quotient of + receives_attachment_from, // receives attachment from + receives_drainage_from, // receives drainage from + receives_input_from, // Receives input from + receives_projection, // receives projection + recipient_category_of, // Recipient category of + referred_to_by, // referred to by + refers_to, // refers to + reformulated_to, // Reformulated to + reformulation_of, // Reformulation of + regimen_has_accepted_use_for_disease, // Regimen Has Accepted Use For Disease + regional_part_of, // Regional part of + regulated_by, // Regulated by + regulates, // Regulates + related_developmental_entity_of, // related developmental entity of + related_factor_of, // Related factor of + related_object, // related object + related_part, // related part + related_to_genetic_biomarker, // related to genetic biomarker + related_to, // Is Related to + relative_to_part_of, // Relative to part of + replaced_by, // Replaced by + replaces, // Replaces + result_of, // Result of + revision_status_of, // Revision status of + right_lateral_to, // right lateral to + right_medial_to, // right medial to + risk_factor_of, // Risk factor of + role_has_domain, // role has domain + role_has_parent, // role has parent + role_has_range, // role has range + role_is_parent_of, // role is parent of + route_of_administration_of_excluded, // Route of administration of excluded + route_of_administration_of_possibly_included, // Route of administration of possibly included + route_of_administration_of, // Route of administration of + same_as, // Same as + scale_of, // Scale of + scale_type_of, // Scale type of + secondary_segmental_supply_of, // Secondary segmental supply of + see_from, // See from + see, // See + segmental_composition_of, // Segmental composition of + segmental_supply_of, // Segmental supply of + sends_output_to, // Sends output to + severity_of, // Severity of + sib_in_branch_of, // Sibling in branch of + sib_in_isa, // Sibling in is a + sib_in_part_of, // Sibling in part of + sib_in_tributary_of, // Sibling in tributary of + sign_or_symptom_of, // Sign or symptom of + site_of_metabolism, // Site of metabolism + smaller_than, // Smaller Than + sort_version_of, // Sort version of + special_category_includes_neoplasm, // special category includes neoplasm + specialty_of, // Specialty of + specimen_of_excluded, // Specimen of excluded + specimen_of, // Specimen of + specimen_procedure_of, // Specimen procedure of + specimen_source_identity_of, // Specimen source identity of + specimen_source_morphology_of, // Specimen source morphology of + specimen_source_topography_of, // specimen source topography of + specimen_substance_of, // Specimen substance of + ssc, // scc + stage_of, // Stage of + state_of_matter_of, // State of matter of + structural_class_of, // Has structural class + sub_specimen_included_by, // Sub specimen included by + subject_of_information_of, // Subject of information of + subject_relationship_context_of, // Subject relationship context of + subset_includes_concept, // subset includes concept + substance_used_by_excluded, // Substance used by excluded + substance_used_by_possibly_included, // Substance used by possibly included + substance_used_by, // Substance used by + suffix_of, // Suffix of + superior_to, // superior to + superolateral_to, // superolateral to + superomedial_to, // superomedial to + supersystem_of, // Supersystem of + supported_concept_property_in, // Supported concept property in + supported_concept_relationship_in, // Supported concept relationship in + surgical_approach_of, // surgical approach of + surgical_extent_of_excluded, // Surgical extent of excluded + surgical_extent_of_possibly_included, // Surgical extent of possibly included + surgical_extent_of, // Surgical extent of + surrounded_by, // Surrounded by + surrounds, // Surrounds + system_of, // System of + target_anatomy_has_procedure, // target anatomy has procedure + technique_of, // Technique of + temporal_context_of, // Temporal context of + temporally_followed_by, // Temporally followed by + temporally_follows, // Temporally follows + temporally_related_to, // Temporally related to + therapeutic_class_of, // Therapeutic class of + time_aspect_of, // Time aspect of + time_modifier_of, // Time modifier of + tissue_is_expression_site_of_gene_product, // tissue is expression site of gene product + tradename_of, // Tradename of + transforms_from, // transforms from + transforms_into, // transforms into + translation_of, // Translation of + transliterated_form_of, // transliterated_form_of + treated_by, // Treated by + treats, // Treats + tributary_of, // Tributary of + uniquely_mapped_from, // Uniquely mapped from + uniquely_mapped_to, // Uniquely mapped to + unit_of_presentation_of, // Unit of presentation of + used_by, // Used by + used_for, // Used for + uses_access_device, // Uses access device + uses_device, // Uses device + uses_energy, // Uses energy + uses_excluded_substance, // Uses excluded substance + uses_possibly_included_substance, // Uses possibly included substance + uses_substance, // Uses substance + uses, // Uses + use, // Use + venous_drainage_of, // Venous drainage of + version_of, // Version of + was_a, // Was a + wound_has_communication_with, // Wound has communication with + UNKNOWN; + + private final String _name; + + Rela() { + this( "" ); + } + + Rela( String name ) { + _name = name; + } + + public String getName() { + if ( _name.isEmpty() ) { + return this.name(); + } + return _name; + } + + static public Rela getRela( final String name ) { + return Arrays.stream( values() ) + .filter( s -> name.equalsIgnoreCase( s.getName() ) ) + .findFirst() + .orElse( UNKNOWN ); + } + +}
Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Srl.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Srl.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Srl.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Srl.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,29 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.abbreviation; + +/** + * https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html + * + * @author SPF , chip-nlp + * @version %I% + * @since 12/18/2018 + */ +public enum Srl { + SRL_0( "0" ), // No additional restrictions; general terms of the license agreement apply. + SRL_1( "1" ), // General terms + additional restrictions in category 12.1 + SRL_2( "2" ), // General terms + additional restrictions in category 12.2 + SRL_3( "3" ), // General terms + additional restrictions in category 12.3 + SRL_4( "4" ), // General terms + additional restrictions in category 12.4 + SRL_9( "9" ); // General terms + SNOMED CT Affiliate License in Appendix 2 + + private final String _name; + + Srl( String name ) { + _name = name; + } + + public String getName() { + return _name; + } + + +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stt.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stt.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stt.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stt.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,17 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.abbreviation; + +/** + * String type + * https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html + * + * @author SPF , chip-nlp + * @version %I% + * @since 12/18/2018 + */ +public enum Stt { + PF, // Preferred form of term + VCW, // Case and word-order variant of the preferred form + VC, // Case variant of the preferred form + VO, // Variant of the preferred form + VW; // Word-order variant of the preferred form +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stype.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stype.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stype.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Stype.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,18 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.abbreviation; + +/** + * Column name in MRCONSO.RRF with identifier to which relationship is attached + * https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html + * + * @author SPF , chip-nlp + * @version %I% + * @since 12/18/2018 + */ +public enum Stype { + AUI, //Atom identifier + CODE, //Unique Identifier or code for string in source + CUI, //Concept unique identifier + SCUI, //Source asserted concept unique identifier + SDUI; //Source asserted descriptor identifier + +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Ts.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Ts.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Ts.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/abbreviation/Ts.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,16 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.abbreviation; + +/** + * Term Status + * https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html + * + * @author SPF , chip-nlp + * @version %I% + * @since 12/18/2018 + */ +public enum Ts { + P, // Preferred LUI of the CUI + S; // Non-Preferred LUI of the CUI +// p, // Preferred LUI of the CUI, suppressible (only used in ORF MRCON) +// s; // Non-Preferred LUI of the CUI, suppressible (only used in ORF MRCON) +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrConso.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrConso.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrConso.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrConso.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,32 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.file; + + +/** + * @author SPF , chip-nlp + * @version %I% + * @since 11/29/2018 + * <p> + * Concept names and sources in the MRCONSO.RRF + */ +public enum MrConso { + CUI, // Unique identifier for concept + LAT, // Language of Term(s) + TS, // Term status + LUI, // Unique identifier for term + STT, // String type + SUI, // Unique identifier for string + ISPREF, // Indicates whether AUI is preferred --- oddly enough, N sometimes means Yes ... + AUI, // Unique identifier for atom + SAUI, // Source asserted atom identifier + SCUI, // Source asserted concept identifier + SDUI, // Source asserted descriptor identifier + SAB, // Source abbreviation + TTY, // Term type in source + CODE, // Unique Identifier or code for string in source + STR, // String + SRL, // Source Restriction Level + SUPPRESS,// Suppressible flag It looks like "O" means suppressible, "N" means not. + CVF; // Content view flag + + +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrRel.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrRel.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrRel.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrRel.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,30 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.file; + + +/** + * @author SPF , chip-nlp + * @version %I% + * @since 11/29/2018 + * <p> + * Related Concepts in MRREL.RRF + */ +public enum MrRel { + CUI1, // Unique identifier for first concept + AUI1, // Unique identifier for first atom + STYPE1, // The name of the column in MRCONSO.RRF that contains the first identifier to which the relationship is attached + REL, // Relationship label + CUI2, // Unique identifier for second concept + AUI2, // Unique identifier for second atom + STYPE2, // The name of the column in MRCONSO.RRF that contains the second identifier to which the relationship is attached + RELA, // Additional relationship label --- e.g. parent_of + RUI, // Unique identifier for relationship + SRUI, // Source attributed relationship identifier + SAB, // Source abbreviation --- e.g. NCI + SL, // Source of relationship labels --- e.g. NCI + RG, // Relationship group + DIR, // Source asserted directionality flag + SUPPRESS,// Suppressible flag + CVF; // Content view flag + + +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSat.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSat.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSat.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSat.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,27 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.file; + + +/** + * @author SPF , chip-nlp + * @version %I% + * @since 11/29/2018 + * <p> + * Simple Concept, Term and String Attributes in MRSAT.RRF + */ +public enum MrSat { + CUI, // Unique identifier for concept + LUI, // Unique identifier for term + SUI, // Unique identifier for string + METAUI, // Metathesaurus asserted unique identifier + STYPE, // The name of the column in MRCONSO.RRF or MRREL.RRF that contains the identifier to which the attribute is attached + CODE, // Unique Identifier or code for string in source + ATUI, // Unique identifier for attribute + SATUI, // Source asserted attribute identifier + ATN, // Attribute name + SAB, // Source abbreviation + ATV, // Attribute value + SUPPRESS,// Suppressible flag + CVF; // Content view flag + + +} Added: ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSty.java URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSty.java?rev=1881995&view=auto ============================================================================== --- ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSty.java (added) +++ ctakes/trunk/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/cased/umls/file/MrSty.java Fri Sep 25 01:04:47 2020 @@ -0,0 +1,18 @@ +package org.apache.ctakes.gui.dictionary.cased.umls.file; + +/** + * @author SPF , chip-nlp + * @version %I% + * @since 11/29/2018 + * <p> + * Semantic Types in MRSTY.RRF + */ +public enum MrSty { + CUI, // Unique identifier for concept + TUI, // Unique identifier of Semantic type + STN, // Semantic type tree number + STY, // Semantic type + ATUI, // Unique identifier for attribute + CVF; // Content view flag + +}
