jadams-tresys commented on code in PR #183:
URL: https://github.com/apache/daffodil-sbt/pull/183#discussion_r3222127018


##########
src/main/scala/org/apache/daffodil/DaffodilPlugin.scala:
##########
@@ -840,6 +858,198 @@ object DaffodilPlugin extends AutoPlugin {
     }
   }
 
+  def daffodilFlattenSettings: Seq[Setting[_]] = Seq(
+    daffodilFlattenTarget := target.value / 
s"${name.value}-${version.value}-flat.zip",
+    /* Paths in daffodilFlattenExcludes/Includes that are not globbed at the 
start are
+     * generally only going to match paths within JAR files on the classpath.
+     * In order to deal with paths on the filesystem we need to glob the start
+     * of the path to account for different directory structure before the
+     * schema project path.
+     */
+    daffodilFlattenIncludes := "*.xsd" | "*.xsl" | "*.xslt" | "*.xml",
+    daffodilFlattenExcludes := HiddenFileFilter,
+
+    /**
+     * Whether or not to publish the flattened schemas zip. Defaults to false.
+     *
+     * If projects want to publish flattened schemas then they must explicitly 
enable it by
+     * setting 'daffodilFlattenSchemas / publishArtifact := true'.
+     *
+     * If false, flattened schemas will not be created unless you explicitly 
run the
+     * daffodilFlattenSchemas.
+     */
+    daffodilFlattenSchemas / publishArtifact := false,
+
+    daffodilFlattenSchemas / artifact := Artifact(
+      name.value,
+      "flat",
+      "zip",
+      Some("flat"),
+      Vector(),
+      None
+    ),
+    daffodilFlattenSchemas := {
+
+      val logger = streams.value.log
+      val filter = daffodilFlattenIncludes.value -- 
daffodilFlattenExcludes.value
+
+      val flatDir = target.value / "flatDir"
+      if (flatDir.exists())
+        IO.delete(flatDir)
+      IO.createDirectory(flatDir)
+
+      val projectResources = (Compile / resourceDirectories).value
+        .map { root => root.toURI.toURL -> (root ** 
filter).get.map(_.toURI.toURL).toList }
+        .toMap
+
+      /* Get all dependency jars and resources specific to this project. Note
+       * that the "Test" configuration is used for JAR files in order to ensure
+       * we pull in XSD files from daffodil-lib, as in many schema projects the
+       * daffodil dependencies are only used for testing, not compiling. Also
+       * note that we want to use Test/externalDependencyClasspath to get
+       * dependency jars, and not something like Test/fullClasspath or
+       * Test/dependencyClasspath, since those could trigger expensive resource
+       * generators or compilation of internal test jars that we don't need--we
+       * only need Compile/resources from this project and Test/dependency jars
+       * from external projects
+       */
+      val projectURLs = (Compile / 
resourceDirectories).value.map(_.toURI.toURL)
+      val allClasspathURLs = (Compile / 
fullClasspath).value.map(_.data.toURI.toURL)
+      val classLoader = new URLClassLoader((projectURLs ++ 
allClasspathURLs).toArray, null)
+
+      val schemaLocationPattern = """schemaLocation=\"([^\"]*)\"""".r
+      val hrefPattern = "href=\"([^\"]*)\"".r
+      val documentPattern = "document[(]'([^']*)'[)]".r
+      val referenceRegexes = List(schemaLocationPattern, hrefPattern, 
documentPattern)
+
+      val referencedFiles = {
+        // This annotation simply warns if the compiler cannot enable tail 
call optimization
+        @scala.annotation.tailrec
+        def getReferences(root: URL, parents: Seq[URL], acc: 
ArrayBuffer[URL]): Seq[URL] = {
+          val rootPath = Paths.get(root.toURI)
+          parents match {
+            // Already processed this file (h), proceed with rest of files (t)
+            case h :: t if (acc.contains(h)) =>
+              getReferences(
+                root,
+                t,
+                acc
+              )
+            // Need to process this file (h)
+            case h :: t => {
+              val relPath = h.toString match {
+                case j if (j.startsWith("jar:")) => 
Paths.get(j.toString.split("!")(1).tail)
+                case f if (f.startsWith("file:")) => 
rootPath.relativize(Paths.get(h.toURI))
+              }
+              val bytes = h.openStream().readAllBytes()
+              val newPath = Paths.get(
+                flatDir.toString,
+                relPath.toString.replaceAll("/", "__")
+              )
+              val bw = Files.newBufferedWriter(newPath)
+              val fileAsString = new String(bytes, Charset.defaultCharset())
+              val references = {
+                referenceRegexes.flatMap { re =>
+                  re.findAllIn(fileAsString).matchData.map(_.group(1))
+                }
+              }
+
+              // Resolve the location of all references on the actual file
+              // system
+              val resolvedReferences = references
+                .map { ref =>
+                  val origLocation = {
+                    if (ref.contains("urn:")) {
+                      val urn = ref.split(" ")(1)
+                      if (urn.startsWith("/"))
+                        urn.tail
+                      else
+                        urn
+                    } else if (ref.startsWith("/"))
+                      ref.tail
+                    else
+                      ref
+                  }
+                  val res = {
+                    val r = classLoader.findResource(origLocation)
+                    if (r == null) {
+                      val rrel = List(relPath.getParent, 
origLocation).mkString("/")
+                      classLoader.findResource(rrel)

Review Comment:
   It seems that normalize is getting called behind the scenes somewhere.  I 
verified that it works as expected with schema locations containing "../".
   
   I'm a little unsure what you are referring to with your first paragraph 
though. The relPath variable is set to the path of the file relative to it's 
root: (src/main/resources if it's a regular file or I am splitting the full jar 
filename at the "!" and using that.  The classLoader is then used to verify 
that we created a correct path to a resource that actually exists.



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