jadams-tresys commented on code in PR #183:
URL: https://github.com/apache/daffodil-sbt/pull/183#discussion_r3236220365


##########
src/main/scala/org/apache/daffodil/DaffodilPlugin.scala:
##########
@@ -840,6 +854,179 @@ object DaffodilPlugin extends AutoPlugin {
     }
   }
 
+  def daffodilFlattenSettings: Seq[Setting[_]] = Seq(
+    daffodilFlattenTarget := target.value / 
s"${name.value}-${version.value}-flat.zip",
+
+    /**
+     * Whether or not to publish the flattened schemas zip. Defaults to false.
+     *
+     * If projects want to publish flattened schemas then they must explicitly 
enable it by
+     * setting 'daffodilFlattenSchemas / publishArtifact := true'.
+     *
+     * If false, flattened schemas will not be created unless you explicitly 
run the
+     * daffodilFlattenSchemas.
+     */
+    daffodilFlattenSchemas / publishArtifact := false,
+
+    daffodilFlattenSchemas / artifact := Artifact(
+      name.value,
+      "flat",
+      "zip",
+      Some("flat"),
+      Vector(),
+      None
+    ),
+
+    /**
+     * Only grab the file types that need to be flattened. These files are only
+     * grabbed from the root project. Any referenced files will be pulled in
+     * from the classpath. Note that XML files are commonly used in XSLT for
+     * settings.
+     */
+    daffodilFlattenSchemas / includeFilter := "*.xsd" | "*.xsl" | "*.xslt" | 
"*.xml",
+    daffodilFlattenSchemas / excludeFilter := HiddenFileFilter,
+
+    daffodilFlattenResourceReferencePatterns := List(
+        """schemaLocation=\"([^\"]*)\"""".r,
+        "href=\"([^\"]*)\"".r,
+        "document[(]'([^']*)'[)]".r),
+
+    daffodilFlattenSchemas / products := {
+
+      val logger = streams.value.log
+      val filter = (daffodilFlattenSchemas / includeFilter).value -- 
(daffodilFlattenSchemas / excludeFilter).value
+
+      val flatDir = target.value / "flatDir"
+      if (flatDir.exists())
+        IO.delete(flatDir)
+      IO.createDirectory(flatDir)
+
+      val projectResources = (Compile / resourceDirectories).value
+        .map { root => root.toURI.toURL -> (root ** 
filter).get.map(_.toURI.toURL).toList }
+        .toMap
+
+      /**
+       * Create a URLClassLoader object with URLs to all resources used by the
+       * project. The class loader will be used to resolve references made
+       * within the flattened files.
+       */
+      val projectURLs = (Compile / 
resourceDirectories).value.map(_.toURI.toURL)
+      val allClasspathURLs = (Test / 
externalDependencyClasspath).value.map(_.data.toURI.toURL)
+      val classLoader = new URLClassLoader((projectURLs ++ 
allClasspathURLs).toArray, null)
+
+      val referenceRegexes = daffodilFlattenResourceReferencePatterns.value
+
+      val processed = scala.collection.mutable.Set[URI]()
+      projectResources foreach { case (rootURL, urls) =>
+        val unprocessed = scala.collection.mutable.Stack[URI]()
+        val rootURI = rootURL.toURI
+        val rootPath = Paths.get(rootURI)
+        unprocessed.pushAll(urls.map(_.toURI))
+        while (!unprocessed.isEmpty) {
+          val contextURI = unprocessed.pop
+          val bytes = contextURI.toURL.openStream().readAllBytes()
+          val contextRelPath = contextURI.getScheme match {
+            case "jar" => Paths.get(contextURI.toString.split("!")(1).tail)
+            case "file" => Paths.get(rootURI.relativize(contextURI).getPath)
+            case _ => throw new IllegalArgumentException(s"Unrecognized URI 
scheme: $contextURI")
+          }
+          val contextFlatPath = Paths.get(
+            flatDir.toString,
+            contextRelPath.toString.replaceAll("/", "__"))
+          val bw = Files.newBufferedWriter(contextFlatPath)
+          val fileAsString = new String(bytes, Charset.defaultCharset())
+
+          val references = referenceRegexes.flatMap { re =>
+            re.findAllIn(fileAsString).matchData.map(_.group(1))
+          }
+
+          val resolvedRefs = references.map { ref =>
+            val origLocation = if (ref contains " ") ref.split(" ")(1) else ref
+            if (origLocation.startsWith("/")) {
+              // Dealing with an absolute path
+              val url = Option(classLoader.findResource(origLocation.tail))
+              if (url.isDefined)
+                Some(origLocation -> url.get.toURI)
+              else {
+                logger.warn(s"Unable to resolve absolute reference to $ref 
from source file $contextURI")
+                None
+              }
+            } else {
+              // Relative path
+              val relPath = 
contextRelPath.resolveSibling(origLocation).normalize()
+              if (Files.exists(rootPath.resolve(relPath))) {

Review Comment:
   Is there a problem with the current behavior where if it doesn't find it in 
the current root it will use the URLClassLoader which contains URL's for all 
the roots?  I just feel like this results in the same behavior.



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