http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/e13e3b74/taverna-biomart-martservice/src/main/java/org/biomart/martservice/config/ui/MartServiceQueryConfigUIFactory.java ---------------------------------------------------------------------- diff --git a/taverna-biomart-martservice/src/main/java/org/biomart/martservice/config/ui/MartServiceQueryConfigUIFactory.java b/taverna-biomart-martservice/src/main/java/org/biomart/martservice/config/ui/MartServiceQueryConfigUIFactory.java deleted file mode 100644 index 3531539..0000000 --- a/taverna-biomart-martservice/src/main/java/org/biomart/martservice/config/ui/MartServiceQueryConfigUIFactory.java +++ /dev/null @@ -1,3543 +0,0 @@ -/* - * Copyright (C) 2003 The University of Manchester - * - * Modifications to the initial code base are copyright of their - * respective authors, or their employers as appropriate. Authorship - * of the modifications may be determined from the ChangeLog placed at - * the end of this file. - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU Lesser General Public License - * as published by the Free Software Foundation; either version 2.1 of - * the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, but - * WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - * Lesser General Public License for more details. - * - * You should have received a copy of the GNU Lesser General Public - * License along with this program; if not, write to the Free Software - * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 - * USA. - * - **************************************************************** - * Source code information - * ----------------------- - * Filename $RCSfile: MartServiceQueryConfigUIFactory.java,v $ - * Revision $Revision: 1.6 $ - * Release status $State: Exp $ - * Last modified on $Date: 2008/03/04 16:46:53 $ - * by $Author: davidwithers $ - * Created on 21-Jun-2007 - *****************************************************************/ -package org.biomart.martservice.config.ui; - -import java.awt.BorderLayout; -import java.awt.Color; -import java.awt.Component; -import java.awt.Container; -import java.awt.Dimension; -import java.awt.Font; -import java.awt.Graphics; -import java.awt.GridBagConstraints; -import java.awt.GridBagLayout; -import java.awt.GridLayout; -import java.awt.Insets; -import java.awt.event.ActionEvent; -import java.awt.event.ActionListener; -import java.awt.event.ItemEvent; -import java.awt.event.ItemListener; -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.Collections; -import java.util.HashMap; -import java.util.Iterator; -import java.util.List; -import java.util.Map; -import java.util.Set; - -import javax.swing.AbstractButton; -import javax.swing.AbstractListModel; -import javax.swing.Box; -import javax.swing.BoxLayout; -import javax.swing.ButtonGroup; -import javax.swing.DefaultComboBoxModel; -import javax.swing.DefaultListCellRenderer; -import javax.swing.JButton; -import javax.swing.JCheckBox; -import javax.swing.JComboBox; -import javax.swing.JComponent; -import javax.swing.JFileChooser; -import javax.swing.JLabel; -import javax.swing.JList; -import javax.swing.JOptionPane; -import javax.swing.JPanel; -import javax.swing.JProgressBar; -import javax.swing.JRadioButton; -import javax.swing.JScrollPane; -import javax.swing.JSplitPane; -import javax.swing.JTextArea; -import javax.swing.JTextField; -import javax.swing.ListModel; -import javax.swing.SwingConstants; -import javax.swing.border.AbstractBorder; -import javax.swing.border.CompoundBorder; -import javax.swing.border.EmptyBorder; -import javax.swing.border.LineBorder; -import javax.swing.event.DocumentEvent; -import javax.swing.event.DocumentListener; - -import org.apache.log4j.Logger; -import org.biomart.martservice.DatasetLink; -import org.biomart.martservice.MartDataset; -import org.biomart.martservice.MartQuery; -import org.biomart.martservice.MartService; -import org.biomart.martservice.MartServiceException; -import org.biomart.martservice.config.QueryConfigController; -import org.biomart.martservice.config.QueryConfigUtils; -import org.biomart.martservice.config.event.QueryComponentAdapter; -import org.biomart.martservice.config.event.QueryComponentEvent; -import org.biomart.martservice.query.Attribute; -import org.biomart.martservice.query.Dataset; -import org.biomart.martservice.query.Filter; -import org.biomart.martservice.query.Query; -import org.biomart.martservice.query.QueryListener; -import org.ensembl.mart.lib.config.AttributeCollection; -import org.ensembl.mart.lib.config.AttributeDescription; -import org.ensembl.mart.lib.config.AttributeGroup; -import org.ensembl.mart.lib.config.AttributeList; -import org.ensembl.mart.lib.config.AttributePage; -import org.ensembl.mart.lib.config.BaseNamedConfigurationObject; -import org.ensembl.mart.lib.config.DatasetConfig; -import org.ensembl.mart.lib.config.FilterCollection; -import org.ensembl.mart.lib.config.FilterDescription; -import org.ensembl.mart.lib.config.FilterGroup; -import org.ensembl.mart.lib.config.FilterPage; -import org.ensembl.mart.lib.config.Option; -import org.ensembl.mart.lib.config.PushAction; - -/** - * Implementation of the <code>QueryConfigUIFactory</code> interface that - * creates a UI which looks like the Biomart web interface. - * - * @author David Withers - */ -public class MartServiceQueryConfigUIFactory implements QueryConfigUIFactory { - - private static Logger logger = Logger - .getLogger(MartServiceQueryConfigUIFactory.class); - - private String version; - - private Color borderColor = new Color(202, 207, 213); - - private Color backgroundColor = Color.WHITE; - - private Color componentBackgroundColor = Color.WHITE; - - private MartService martService; - - private QueryConfigController controller; - - private MartDataset martDataset; - - private DatasetConfig datasetConfig; - - private Map<String, Component> filterNameToComponentMap = new HashMap<String, Component>(); - - private Map<String, List<Component>> attributeNameToComponentMap = new HashMap<String, List<Component>>(); - - private Map<String, String> filterToDisplayName = new HashMap<String, String>(); - - private Map<String, String> attributeToDisplayName = new HashMap<String, String>(); - - private Map<String, Component> attributePageNameToComponent = new HashMap<String, Component>(); - - private Map<String, JRadioButton> attributePageNameToButton = new HashMap<String, JRadioButton>(); - - private boolean settingAttributeState = false; - - private List<Component> componentRegister = new ArrayList<Component>(); - - private int datasetNumber; - - public MartServiceQueryConfigUIFactory(MartService martService, - QueryConfigController controller, MartDataset martDataset) - throws MartServiceException { - this(martService, controller, martDataset, 1); - } - - public MartServiceQueryConfigUIFactory(MartService martService, - QueryConfigController controller, MartDataset martDataset, - int datasetNumber) throws MartServiceException { - this.martService = martService; - this.controller = controller; - this.martDataset = martDataset; - this.datasetNumber = datasetNumber; - version = getConfigStyle(); - } - - private String getConfigStyle() { - String configStyle = "0.5"; - String version = controller.getMartQuery().getQuery() - .getSoftwareVersion(); - if (version == null || "0.4".equals(version)) { - configStyle = "0.4"; - } - return configStyle; - } - - /** - * Returns the martDataset. - * - * @return the martDataset. - */ - public MartDataset getMartDataset() { - return martDataset; - } - - /** - * Returns the query configuration for the dataset. - * - * @return the query configuration for the dataset - * @throws MartServiceException - * if the MartService returns an error or is unavailable - */ - public DatasetConfig getDatasetConfig() throws MartServiceException { - if (datasetConfig == null) { - datasetConfig = martService.getDatasetConfig(martDataset); - } - return datasetConfig; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getDatasetConfigUI(org.ensembl.mart.lib.config.DatasetConfig) - */ - public Component getDatasetConfigUI() throws MartServiceException { - JPanel panel = new JPanel(new BorderLayout()); - - final SummaryPanel summaryPanel = new SummaryPanel(); - - final JButton countButton = new JButton("Count"); - countButton.setFont(countButton.getFont().deriveFont(Font.BOLD)); - countButton.setOpaque(false); - countButton.addActionListener(new ActionListener() { - - public void actionPerformed(ActionEvent e) { - countButton.setEnabled(false); - countButton.setText("Counting..."); - new Thread("BiomartDatasetCount") { - public void run() { - try { - MartQuery martQuery = controller.getMartQuery(); - Query query = martQuery.getQuery(); - String datasetName = martQuery.getMartDataset() - .getName(); - - JLabel label1 = summaryPanel - .getDataset1CountLabel(); - setSummaryCount(query, datasetName, label1); - - Set<String> linkedDatasets = martQuery.getLinkedDatasets(); - if (linkedDatasets.size() == 1) { - String linkedDatasetName = linkedDatasets - .iterator().next(); - JLabel label2 = summaryPanel - .getDataset2CountLabel(); - setSummaryCount(query, linkedDatasetName, - label2); - } - - } catch (MartServiceException e) { - } - countButton.setText("Count"); - countButton.setEnabled(true); - } - }.start(); - } - - }); - - final JCheckBox uniqueCheckBox = new JCheckBox("Unique results only"); - uniqueCheckBox.setBackground(Color.BLACK); - uniqueCheckBox.setForeground(Color.WHITE); - uniqueCheckBox.setSelected(controller.getMartQuery().getQuery() - .getUniqueRows() == 1); - - uniqueCheckBox.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - if (e.getStateChange() == ItemEvent.SELECTED) { - controller.getMartQuery().getQuery().setUniqueRows(1); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - controller.getMartQuery().getQuery().setUniqueRows(0); - } - } - }); - - JPanel buttonPanel = new JPanel(new BorderLayout()); - buttonPanel.setBackground(Color.BLACK); - buttonPanel.setBorder(new EmptyBorder(5, 5, 5, 5)); - buttonPanel.add(countButton, BorderLayout.WEST); - buttonPanel.add(uniqueCheckBox, BorderLayout.EAST); - panel.add(buttonPanel, BorderLayout.NORTH); - - JLabel label = new JLabel("biomart version 0.6"); - label.setBackground(Color.BLACK); - label.setForeground(Color.WHITE); - label.setOpaque(true); - label.setBorder(new EmptyBorder(5, 5, 5, 5)); - panel.add(label, BorderLayout.SOUTH); - - JSplitPane splitPanel = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, - true); - splitPanel.setBackground(backgroundColor); - splitPanel.setBorder(new EmptyBorder(10, 0, 10, 0)); - splitPanel.setDividerLocation(250); - - panel.add(splitPanel, BorderLayout.CENTER); - - JScrollPane scrollPane1 = new JScrollPane(summaryPanel); - scrollPane1.getVerticalScrollBar().setUnitIncrement(10); - scrollPane1.setBorder(new LineBorder(Color.BLACK, 1)); - - splitPanel.setLeftComponent(scrollPane1); - - final JComponent inputPanel = createVerticalBox(backgroundColor); - inputPanel.setBorder(new EmptyBorder(10, 5, 10, 5)); - - JScrollPane scrollPane = new JScrollPane(inputPanel); - scrollPane.getVerticalScrollBar().setUnitIncrement(10); - scrollPane.setBorder(new LineBorder(Color.BLACK, 1)); - - splitPanel.setRightComponent(scrollPane); - - final JComponent datasetPanel = new DatasetPanel(); - inputPanel.add(datasetPanel); - -// final Component linkComponent = new DatasetLinkComponent(inputPanel, -// summaryPanel); -// componentRegister.add(linkComponent); - - final JComponent attributePanel = createVerticalBox(backgroundColor); - attributePanel.setBorder(new EmptyBorder(10, 5, 10, 5)); - - final JComponent filterPanel = createVerticalBox(backgroundColor); - filterPanel.setBorder(new EmptyBorder(10, 5, 10, 5)); - - summaryPanel.getDataset1Button().addActionListener( - new ActionListener() { - public void actionPerformed(ActionEvent e) { - inputPanel.removeAll(); - inputPanel.add(datasetPanel); - inputPanel.revalidate(); - inputPanel.repaint(); - } - }); - -// summaryPanel.getDataset2Button().addActionListener( -// new ActionListener() { -// public void actionPerformed(ActionEvent e) { -// inputPanel.removeAll(); -// inputPanel.add(linkComponent); -// inputPanel.revalidate(); -// inputPanel.repaint(); -// } -// }); - - generateConfiguration(this, summaryPanel, inputPanel, attributePanel, - filterPanel); - - summaryPanel.getFilters1Button().addActionListener( - new ActionListener() { - public void actionPerformed(ActionEvent e) { - inputPanel.removeAll(); - inputPanel.add(filterPanel); - inputPanel.revalidate(); - inputPanel.repaint(); - } - }); - - summaryPanel.getAttributes1Button().addActionListener( - new ActionListener() { - public void actionPerformed(ActionEvent e) { - inputPanel.removeAll(); - inputPanel.add(attributePanel); - inputPanel.revalidate(); - inputPanel.repaint(); - } - }); - - return panel; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributePagesUI(org.ensembl.mart.lib.config.AttributePage[]) - */ - public Component getAttributePagesUI(AttributePage[] attributePages, - Object data) throws MartServiceException { - final JComponent box = createVerticalBox(backgroundColor); - - final JComboBox formatList = new JComboBox(); - formatList.setBackground(backgroundColor); - - if (datasetNumber == 1) { - formatList.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - if (e.getStateChange() == ItemEvent.SELECTED) { - controller.getMartQuery().getQuery().setFormatter( - (String) e.getItem()); - } - } - }); - - ButtonGroup outputButtons = new ButtonGroup(); - JRadioButton multipleOutput = new JRadioButton( - "Multiple outputs (one per attribute)"); - multipleOutput.setBackground(backgroundColor); - JRadioButton singleOutput = new JRadioButton( - "Single output formatted as"); - singleOutput.setBackground(backgroundColor); - outputButtons.add(multipleOutput); - outputButtons.add(singleOutput); - if (controller.getMartQuery().getQuery().getFormatter() == null) { - multipleOutput.setSelected(true); - formatList.setEnabled(false); - } else { - singleOutput.setSelected(true); - formatList.setEnabled(true); - } - - singleOutput.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - if (e.getStateChange() == ItemEvent.SELECTED) { - controller.getMartQuery().getQuery().setFormatter( - (String) formatList.getSelectedItem()); - formatList.setEnabled(true); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - controller.getMartQuery().getQuery().setFormatter(null); - formatList.setEnabled(false); - } - } - }); - - JPanel multipleOutputBox = new JPanel(new MinimalLayout()); - multipleOutputBox.setBackground(componentBackgroundColor); - multipleOutputBox.add(multipleOutput); - - JComponent formatBox = createHorizontalBox(backgroundColor); - formatBox.add(singleOutput); - formatBox.add(Box.createHorizontalStrut(10)); - formatBox.add(formatList); - formatBox.add(Box.createHorizontalGlue()); - - JComponent outputBox = createVerticalBox(backgroundColor); - outputBox.setBorder(new CompoundBorder(new LineBorder(borderColor, - 1), new EmptyBorder(10, 10, 10, 10))); - outputBox.add(multipleOutputBox); - outputBox.add(formatBox); - - box.add(Box.createVerticalStrut(2)); - box.add(outputBox); - - } - - if (attributePages.length > 1) { - ButtonGroup buttonGroup = new ButtonGroup(); - final Map<String, Component> componentMap = new HashMap<String, Component>(); - final Map<String, List<String>> formatMap = new HashMap<String, List<String>>(); - - final JComponent buttonBox = new JPanel(new GridLayout(0, 2)); - buttonBox.setBorder(new CompoundBorder(new LineBorder(borderColor, - 1), new EmptyBorder(10, 10, 10, 10))); - buttonBox.setBackground(backgroundColor); - box.add(buttonBox, 0); - - final JComponent pagePanel = new JPanel(new BorderLayout()); - pagePanel.setBackground(backgroundColor); - box.add(pagePanel); - - ItemListener listener = new ItemListener() { - Component lastSelectedComponent; - - JRadioButton lastSelectedButton; - - public void itemStateChanged(ItemEvent e) { - JRadioButton button = (JRadioButton) e.getItem(); - if (button != null) { - Component selectedComponent = componentMap.get(button - .getActionCommand()); - if (e.getStateChange() == ItemEvent.SELECTED) { - boolean switchPage = true; - if (lastSelectedComponent != null) { - Map<String, AttributeComponent> selected = new HashMap<String, AttributeComponent>(); - // find all attributes on the last page that - // were selected - List<AttributeComponent> oldChildren = getAttributeComponents(lastSelectedComponent); - for (AttributeComponent attributeComponent : oldChildren) { - if (attributeComponent.isSelected()) { - selected.put(attributeComponent - .getQualifiedName(), - attributeComponent); - } - } - // remove attributes that are already selected - // on - // the new page - List<AttributeComponent> newChildren = getAttributeComponents(selectedComponent); - for (AttributeComponent attributeComponent : newChildren) { - if (attributeComponent.isSelected()) { - selected.remove(attributeComponent - .getQualifiedName()); - } - } - Collection<AttributeComponent> stillSelected = selected - .values(); - if (stillSelected.size() > 0) { - List<String> attributeNames = new ArrayList<String>(); - for (AttributeComponent component : stillSelected) { - attributeNames.add(component - .getButton().getText()); - } - List<Object> message = new ArrayList<Object>(); - message - .add("The " - + button.getText() - + " page does not contain the following attributes:"); - JList jList = new JList(attributeNames - .toArray()); - jList.setBorder(LineBorder - .createGrayLineBorder()); - message.add(jList); - message - .add("These attributes will be removed. Do you wish to continue?"); - switchPage = JOptionPane.showConfirmDialog( - buttonBox, message.toArray(), - "Confirm page change", - JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION; - } - if (switchPage) { - // deselect any attributes on the old page - // that are not on the new page - for (AttributeComponent attributeComponent : stillSelected) { - attributeComponent.setSelected(false); - } - } - } - if (switchPage) { - pagePanel.add(selectedComponent, - BorderLayout.NORTH); - if (datasetNumber == 1) { - List<String> formats = formatMap.get(button - .getActionCommand()); - formatList - .setModel(new DefaultComboBoxModel( - formats.toArray())); - String formatter = controller - .getMartQuery().getQuery() - .getFormatter(); - if (formatter != null) { - formatList.getModel().setSelectedItem( - null); - if (formats.contains(formatter)) { - formatList.getModel() - .setSelectedItem(formatter); - } else if (formats.size() > 0) { - formatList.getModel() - .setSelectedItem( - formats.get(0)); - } - } - } - } else { - lastSelectedButton.setSelected(true); - } - box.revalidate(); - box.repaint(); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - pagePanel.removeAll(); - lastSelectedComponent = selectedComponent; - lastSelectedButton = button; - } - } - } - - }; - - for (int i = 0; i < attributePages.length; i++) { - if (QueryConfigUtils.display(attributePages[i])) { - Component component = getAttributePageUI(attributePages[i], - data); - JRadioButton button = new JRadioButton(attributePages[i] - .getDisplayName()); - String description = attributePages[i].getDescription(); - if (description != null) { - button.setToolTipText(description); - } - button.setBackground(backgroundColor); - button.setFont(button.getFont().deriveFont(Font.BOLD)); - button - .setActionCommand(attributePages[i] - .getInternalName()); - button.addItemListener(listener); - buttonGroup.add(button); - buttonBox.add(button); - componentMap.put(attributePages[i].getInternalName(), - component); - formatMap.put(attributePages[i].getInternalName(), getFormatList(attributePages[i])); - attributePageNameToComponent.put(attributePages[i] - .getInternalName(), component); - attributePageNameToButton.put(attributePages[i] - .getInternalName(), button); - } - } - - } else if (attributePages.length == 1) { - if (datasetNumber == 1) { - List<String> formats = Arrays.asList(attributePages[0] - .getOutFormats().toUpperCase().split(",")); - formatList - .setModel(new DefaultComboBoxModel(formats.toArray())); - String formatter = controller.getMartQuery().getQuery() - .getFormatter(); - if (formatter != null) { - formatList.getModel().setSelectedItem(null); - if (formats.contains(formatter)) { - formatList.getModel().setSelectedItem(formatter); - } else if (formats.size() > 0) { - formatList.getModel().setSelectedItem(formats.get(0)); - } - } - } - box.add(getAttributePageUI(attributePages[0], data)); - - } else { - box.add(new JLabel("No attributes available")); - } - - JPanel northPanel = new JPanel(new BorderLayout()); - northPanel.setBackground(backgroundColor); - northPanel.add(box, BorderLayout.NORTH); - - return northPanel; - - // return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributePageUI(org.ensembl.mart.lib.config.AttributePage) - */ - public Component getAttributePageUI(AttributePage attributePage, Object data) - throws MartServiceException { - JComponent box = createVerticalBox(backgroundColor); - - AttributeGroup[] attributeGroups = (AttributeGroup[]) attributePage - .getAttributeGroups().toArray(new AttributeGroup[0]); - - box.add(getAttributeGroupsUI(attributeGroups, data)); - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeGroupsUI(org.ensembl.mart.lib.config.AttributeGroup[]) - */ - public Component getAttributeGroupsUI(AttributeGroup[] attributeGroups, - Object data) throws MartServiceException { - JComponent box = createVerticalBox(backgroundColor); - - for (int i = 0; i < attributeGroups.length; i++) { - if (QueryConfigUtils.display(attributeGroups[i])) { - box.add(Box.createVerticalStrut(2)); - box.add(getAttributeGroupUI(attributeGroups[i], data)); - } - } - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeGroupUI(org.ensembl.mart.lib.config.AttributeGroup) - */ - public Component getAttributeGroupUI(AttributeGroup attributeGroup, - Object data) throws MartServiceException { - JLabel title = new JLabel(attributeGroup.getDisplayName()); - title.setFont(title.getFont().deriveFont(Font.PLAIN)); - - String description = attributeGroup.getDescription(); - if (description != null) { - title.setToolTipText(description); - } - ExpandableBox box = new ExpandableBox(title, componentBackgroundColor, - borderColor, new Insets(10, 10, 10, 10)); - - AttributeCollection[] attributeCollections = attributeGroup - .getAttributeCollections(); - box.add(getAttributeCollectionsUI(attributeCollections, data)); - - box.setExpanded(false); - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeCollectionsUI(org.ensembl.mart.lib.config.AttributeCollection[]) - */ - public Component getAttributeCollectionsUI( - AttributeCollection[] attributeCollections, Object data) - throws MartServiceException { - JComponent box = createVerticalBox(componentBackgroundColor); - - for (int i = 0; i < attributeCollections.length; i++) { - if (QueryConfigUtils.display(attributeCollections[i])) { - box.add(Box.createVerticalStrut(10)); - box - .add(getAttributeCollectionUI(attributeCollections[i], - data)); - } - } - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeCollectionUI(org.ensembl.mart.lib.config.AttributeCollection) - */ - public Component getAttributeCollectionUI( - AttributeCollection attributeCollection, Object data) - throws MartServiceException { - JComponent box = null; - - AttributeDescription[] attributeDescriptions = (AttributeDescription[]) attributeCollection - .getAttributeDescriptions() - .toArray(new AttributeDescription[0]); - - AttributeList[] attributeLists = (AttributeList[]) attributeCollection - .getAttributeLists().toArray(new AttributeList[0]); - - JLabel sequenceLabel = null; - if ("seq_scope_type".equals(attributeCollection.getInternalName())) { - sequenceLabel = new JLabel(MartServiceIcons - .getIcon("gene_schematic")); - box = createBox(sequenceLabel, false); - } else if (attributeDescriptions.length > 1 - || attributeLists.length > 1) { - // more than one attribute so create a box with the collection name - // as a header - JLabel title = new JLabel(attributeCollection.getDisplayName()); - title.setFont(title.getFont().deriveFont(Font.BOLD)); - String description = attributeCollection.getDescription(); - if (description != null) { - title.setToolTipText(description); - } - box = createBox(title, false); - } else { - box = createBox(null, false); - } - - int maxSelect = attributeCollection.getMaxSelect(); - if (maxSelect == 1) { - if (attributeDescriptions.length > 0) { - box.add(getAttributeDescriptionsUI(attributeDescriptions, - new Object[] { SINGLE_SELECTION, sequenceLabel })); - } else { - box.add(getAttributeListsUI(attributeLists, new Object[] { - SINGLE_SELECTION, sequenceLabel })); - } - } else { - if (attributeDescriptions.length > 0) { - box.add(getAttributeDescriptionsUI(attributeDescriptions, - new Object[] { MULTIPLE_SELECTION, sequenceLabel })); - } else { - box.add(getAttributeListsUI(attributeLists, new Object[] { - MULTIPLE_SELECTION, sequenceLabel })); - } - } - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeDescriptionsUI(org.ensembl.mart.lib.config.AttributeDescription[], - * int) - */ - public Component getAttributeDescriptionsUI( - AttributeDescription[] attributeDescriptions, Object data) - throws MartServiceException { - Object[] dataArray = (Object[]) data; - JComponent box = new JPanel(new GridLayout(1, 2)); - box.setBackground(componentBackgroundColor); - JComponent box1 = createVerticalBox(componentBackgroundColor); - JComponent box2 = createVerticalBox(componentBackgroundColor); - box.add(box1); - box.add(box2); - - // button group used if the attribute collection is SINGLE_SELECTION - ButtonGroup buttonGroup = new ButtonGroup(); - JRadioButton off = new JRadioButton("OFF"); - buttonGroup.add(off); - - JComponent currentBox = box1; - - for (int i = 0; i < attributeDescriptions.length; i++) { - if (QueryConfigUtils.display(attributeDescriptions[i])) { - Component component = getAttributeDescriptionUI( - attributeDescriptions[i], - dataArray[0] == SINGLE_SELECTION ? new Object[] { off, - dataArray[1] } : new Object[] { null, - dataArray[1] }); - if (component != null) { - currentBox.add(component); - if (dataArray[0] == SINGLE_SELECTION - && component instanceof AttributeComponent) { - AttributeComponent attributeComponent = (AttributeComponent) component; - buttonGroup.add(attributeComponent.getButton()); - } - if (QueryConfigUtils.isFilterReference( - attributeDescriptions[i], version)) { - FilterDescription filterDescription = QueryConfigUtils - .getReferencedFilterDescription( - attributeDescriptions[i], version); - Component filterComponent = getFilterDescriptionUI( - filterDescription, data); - if (filterComponent instanceof QueryComponent - && component instanceof AttributeComponent) { - AttributeComponent attributeComponent = (AttributeComponent) component; - ((QueryComponent) filterComponent) - .setSelectorButton(attributeComponent - .getButton()); - } - componentRegister.add(filterComponent); - box2.add(filterComponent); - currentBox = box2; - } - if (currentBox == box1) { - currentBox = box2; - } else { - currentBox = box1; - } - } - } - } - currentBox.add(Box.createVerticalGlue()); - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeDescriptionUI(org.ensembl.mart.lib.config.AttributeDescription, - * int) - */ - public Component getAttributeDescriptionUI( - AttributeDescription attributeDescription, Object data) - throws MartServiceException { - Object[] dataArray = (Object[]) data; - MartDataset dataset = martDataset; - AttributeDescription displayedAttribute; - if (QueryConfigUtils.isReference(attributeDescription, version)) { - dataset = QueryConfigUtils.getReferencedDataset(martService, - martDataset, attributeDescription, version); - if (dataset == null) { - return null; - } - if (QueryConfigUtils.isFilterReference(attributeDescription, - version)) { - FilterDescription filter = QueryConfigUtils - .getReferencedFilterDescription(martService, dataset, - attributeDescription, version); - if (filter == null) { - return null; - } - displayedAttribute = attributeDescription; - displayedAttribute.setDisplayName(filter.getDisplayName()); - filterToDisplayName.put(filter.getInternalName(), filter - .getDisplayName()); - } else { - displayedAttribute = QueryConfigUtils - .getReferencedAttributeDescription(martService, - dataset, attributeDescription, version); - if (displayedAttribute == null) { - // if the reference can't be resolved the the attribute just - // doesn't get displayed - return null; - } - } - } else { - displayedAttribute = attributeDescription; - } - - final AttributeComponent component = new AttributeComponent( - displayedAttribute, martDataset, dataArray[0]); - component.setPointerDataset(attributeDescription - .getAttribute("pointerDataset")); - if (!QueryConfigUtils.isFilterReference(attributeDescription, version)) { - if (!attributeNameToComponentMap.containsKey(component - .getQualifiedName())) { - attributeNameToComponentMap.put(component.getQualifiedName(), - new ArrayList<Component>()); - } - attributeNameToComponentMap.get(component - .getQualifiedName()).add(component); - componentRegister.add(component); - // nasty hard coded rules that aren't in the configs - // component.addQueryComponentListener(new QueryComponentAdapter() { - // public void attributeAdded(QueryComponentEvent event) { - // String name = component.getName(); - // String dataset = component.getDataset().getName(); - // if (name.equals("coding_gene_flank") - // || name.equals("coding_transcript_flank") - // || name.equals("transcript_flank") - // || name.equals("gene_flank")) { - // QueryComponent filterComponent = (QueryComponent) - // filterNameToComponentMap - // .get("upstream_flank"); - // if (filterComponent != null) { - // filterComponent.setSelected(true); - // } - // filterComponent = (QueryComponent) filterNameToComponentMap - // .get("downstream_flank"); - // if (filterComponent != null) { - // filterComponent.setSelected(true); - // } - // } - // } - // - // }); - } - if (dataArray[1] instanceof JLabel) { - final JLabel sequenceLabel = (JLabel) dataArray[1]; - component.addQueryComponentListener(new QueryComponentAdapter() { - public void attributeAdded(QueryComponentEvent event) { - String name = component.getName(); - if ("3utr".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_3utr")); - } else if ("5utr".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_5utr")); - } else if ("cdna".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_cdna")); - } else if ("coding_gene_flank".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_coding_gene_flank")); - } else if ("coding_transcript_flank".equals(name)) { - sequenceLabel - .setIcon(MartServiceIcons - .getIcon("gene_schematic_coding_transcript_flank")); - } else if ("coding".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_coding")); - } else if ("gene_exon_intron".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_gene_exon_intron")); - } else if ("gene_exon".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_gene_exon")); - } else if ("gene_flank".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_gene_flank")); - } else if ("peptide".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_peptide")); - } else if ("transcript_exon_intron".equals(name)) { - sequenceLabel - .setIcon(MartServiceIcons - .getIcon("gene_schematic_transcript_exon_intron")); - } else if ("transcript_exon".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_transcript_exon")); - } else if ("transcript_flank".equals(name)) { - sequenceLabel.setIcon(MartServiceIcons - .getIcon("gene_schematic_transcript_flank")); - } - } - - }); - } - return component; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeListsUI(org.ensembl.mart.lib.config.AttributeList[], - * int) - */ - public Component getAttributeListsUI(AttributeList[] attributeLists, - Object data) throws MartServiceException { - Object[] dataArray = (Object[]) data; - JComponent box = new JPanel(new GridLayout(1, 2)); - box.setBackground(componentBackgroundColor); - JComponent box1 = createVerticalBox(componentBackgroundColor); - JComponent box2 = createVerticalBox(componentBackgroundColor); - box.add(box1); - box.add(box2); - - // button group used if the attribute collection is SINGLE_SELECTION - ButtonGroup buttonGroup = new ButtonGroup(); - JRadioButton off = new JRadioButton("OFF"); - buttonGroup.add(off); - - JComponent currentBox = box1; - - for (int i = 0; i < attributeLists.length; i++) { - if (QueryConfigUtils.display(attributeLists[i])) { - Component component = getAttributeListUI(attributeLists[i], - dataArray[0] == SINGLE_SELECTION ? new Object[] { off, - dataArray[1] } : new Object[] { null, - dataArray[1] }); - if (component != null) { - currentBox.add(component); - if (dataArray[0] == SINGLE_SELECTION - && component instanceof AttributeComponent) { - AttributeComponent attributeComponent = (AttributeComponent) component; - buttonGroup.add(attributeComponent.getButton()); - } - if (currentBox == box1) { - currentBox = box2; - } else { - currentBox = box1; - } - } - } - } - currentBox.add(Box.createVerticalGlue()); - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getAttributeListUI(org.ensembl.mart.lib.config.AttributeList, - * int) - */ - public Component getAttributeListUI(AttributeList attributeList, Object data) - throws MartServiceException { - Object[] dataArray = (Object[]) data; - - AttributeComponent component = new AttributeComponent(attributeList, - martDataset, dataArray[0]); - - if (!attributeNameToComponentMap.containsKey(component - .getQualifiedName())) { - attributeNameToComponentMap.put(component.getQualifiedName(), - new ArrayList<Component>()); - } - attributeNameToComponentMap.get(component.getQualifiedName()) - .add(component); - componentRegister.add(component); - /* - * if (dataArray[1] instanceof JLabel) { final JLabel sequenceLabel = - * (JLabel) dataArray[1]; component.addQueryComponentListener(new - * QueryComponentAdapter() { public void - * attributeAdded(QueryComponentEvent event) { String name = - * component.getName(); if ("3utr".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_3utr")); } else if ("5utr".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_5utr")); } else if ("cdna".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_cdna")); } else if - * ("coding_gene_flank".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_coding_gene_flank")); } else if - * ("coding_transcript_flank".equals(name)) { sequenceLabel - * .setIcon(MartServiceIcons - * .getIcon("gene_schematic_coding_transcript_flank")); } else if - * ("coding".equals(name)) { sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_coding")); } else if - * ("gene_exon_intron".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_gene_exon_intron")); } else if - * ("gene_exon".equals(name)) { sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_gene_exon")); } else if - * ("gene_flank".equals(name)) { sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_gene_flank")); } else if - * ("peptide".equals(name)) { sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_peptide")); } else if - * ("transcript_exon_intron".equals(name)) { sequenceLabel - * .setIcon(MartServiceIcons - * .getIcon("gene_schematic_transcript_exon_intron")); } else if - * ("transcript_exon".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_transcript_exon")); } else if - * ("transcript_flank".equals(name)) { - * sequenceLabel.setIcon(MartServiceIcons - * .getIcon("gene_schematic_transcript_flank")); } } - * - * }); } - */ - return component; - - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterPagesUI(org.ensembl.mart.lib.config.FilterPage[]) - */ - public Component getFilterPagesUI(FilterPage[] filterPages, Object data) - throws MartServiceException { - final JComponent box = createVerticalBox(backgroundColor); - - for (int i = 0; i < filterPages.length; i++) { - if (QueryConfigUtils.display(filterPages[i])) { - box.add(getFilterPageUI(filterPages[i], data)); - } - } - - JPanel panel = new JPanel(new BorderLayout()); - panel.setBackground(backgroundColor); - panel.add(box, BorderLayout.NORTH); - - return panel; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterPageUI(org.ensembl.mart.lib.config.FilterPage) - */ - public Component getFilterPageUI(FilterPage filterPage, Object data) - throws MartServiceException { - JComponent box = createVerticalBox(backgroundColor); - - FilterGroup[] filterGroups = (FilterGroup[]) filterPage - .getFilterGroups().toArray(new FilterGroup[0]); - box.add(getFilterGroupsUI(filterGroups, data)); - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterGroupsUI(org.ensembl.mart.lib.config.FilterGroup[]) - */ - public Component getFilterGroupsUI(FilterGroup[] filterGroups, Object data) - throws MartServiceException { - JComponent box = createVerticalBox(backgroundColor); - - for (int i = 0; i < filterGroups.length; i++) { - if (QueryConfigUtils.display(filterGroups[i])) { - box.add(Box.createVerticalStrut(2)); - box.add(getFilterGroupUI(filterGroups[i], data)); - } - } - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterGroupUI(org.ensembl.mart.lib.config.FilterGroup) - */ - public Component getFilterGroupUI(FilterGroup filterGroup, Object data) - throws MartServiceException { - JLabel title = new JLabel(filterGroup.getDisplayName()); - title.setFont(title.getFont().deriveFont(Font.PLAIN)); - String description = filterGroup.getDescription(); - if (description != null) { - title.setToolTipText(description); - } - ExpandableBox box = new ExpandableBox(title, componentBackgroundColor, - borderColor, new Insets(10, 10, 10, 10)); - - FilterCollection[] filterCollections = filterGroup - .getFilterCollections(); - box.add(getFilterCollectionsUI(filterCollections, data)); - - box.setExpanded(false); - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterCollectionsUI(org.ensembl.mart.lib.config.FilterCollection[]) - */ - public Component getFilterCollectionsUI( - FilterCollection[] filterCollections, Object data) - throws MartServiceException { - JComponent box = createVerticalBox(componentBackgroundColor); - - for (int i = 0; i < filterCollections.length; i++) { - if (QueryConfigUtils.display(filterCollections[i])) { - Component component = getFilterCollectionUI( - filterCollections[i], data); - if (component != null) { - box.add(Box.createVerticalStrut(10)); - box.add(component); - } - } - } - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterCollectionUI(org.ensembl.mart.lib.config.FilterCollection) - */ - public Component getFilterCollectionUI(FilterCollection filterCollection, - Object data) throws MartServiceException { - JComponent box = null; - - String displayName = filterCollection.getDisplayName(); - if (displayName == null) { - displayName = filterCollection.getInternalName(); - } - AbstractButton selectorButton = new JCheckBox(QueryConfigUtils - .splitSentence(displayName)); - selectorButton.setFont(selectorButton.getFont().deriveFont(Font.PLAIN)); - selectorButton.setBackground(componentBackgroundColor); - String description = filterCollection.getDescription(); - if (description != null) { - selectorButton.setToolTipText(description); - } - - FilterDescription[] filterDescriptions = (FilterDescription[]) filterCollection - .getFilterDescriptions().toArray(new FilterDescription[0]); - - if (filterDescriptions.length == 1) { - if (QueryConfigUtils.display(filterDescriptions[0])) { - Component filterComponent = getFilterDescriptionUI( - filterDescriptions[0], data); - if (filterComponent != null) { - filterToDisplayName.put( - filterDescriptions[0].getInternalName(), displayName); - if (QueryConfigUtils - .isReference(filterDescriptions[0], version)) { - MartDataset dataset = QueryConfigUtils - .getReferencedDataset(martService, martDataset, - filterDescriptions[0], version); - FilterDescription referencedFilter = QueryConfigUtils - .getReferencedFilterDescription(martService, - dataset, filterDescriptions[0], version); - filterToDisplayName.put(referencedFilter.getInternalName(), - displayName); - } - - box = createBox(null, false); - JComponent grid = new JPanel(new GridLayout(1, 2)); - grid.setBackground(componentBackgroundColor); - JPanel buttonPanel = new JPanel(new MinimalLayout()); - buttonPanel.setBackground(componentBackgroundColor); - buttonPanel.add(selectorButton); - grid.add(buttonPanel); - if (filterComponent instanceof QueryComponent) { - ((QueryComponent) filterComponent) - .setSelectorButton(selectorButton); - } - grid.add(filterComponent); - box.add(grid); - } - } - } else { - Component component = getFilterDescriptionsUI(filterDescriptions, - selectorButton); - if (component != null) { - box = createBox(selectorButton, false); - box.add(component); - } - } - - return box; - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterDescriptionsUI(org.ensembl.mart.lib.config.FilterDescription[], - * int) - */ - public Component getFilterDescriptionsUI( - FilterDescription[] filterDescriptions, Object data) - throws MartServiceException { - List<Component> components = new ArrayList<Component>(); - for (int i = 0; i < filterDescriptions.length; i++) { - if (QueryConfigUtils.display(filterDescriptions[i])) { - Component component = getFilterDescriptionUI( - filterDescriptions[i], data); - if (component != null) { - if (component instanceof QueryComponent - && data instanceof AbstractButton) { - ((QueryComponent) component) - .setSelectorButton((AbstractButton) data); - } - - String displayName = filterDescriptions[i].getDisplayName(); - if (displayName == null) { - logger.info("Cant find a display name for filter '" - + filterDescriptions[i].getInternalName() + "'"); - displayName = filterDescriptions[i].getInternalName(); - } - filterToDisplayName.put( - filterDescriptions[i].getInternalName(), displayName); - JLabel displayLabel = new JLabel(QueryConfigUtils - .splitSentence(displayName)); - displayLabel.setFont(displayLabel.getFont().deriveFont( - Font.PLAIN)); - String description = filterDescriptions[i].getDescription(); - if (description != null) { - displayLabel.setToolTipText(description); - } - displayLabel.setBackground(componentBackgroundColor); - displayLabel.setBorder(new EmptyBorder(0, 22, 0, 0)); - - components.add(displayLabel); - components.add(component); - } - } - } - - if (components.size() > 0) { - JComponent box = new JPanel( - new GridLayout(components.size() / 2, 2)); - box.setBackground(componentBackgroundColor); - for (Component component : components) { - box.add(component); - } - return box; - } else { - return null; - } - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryConfigUIFactory#getFilterDescriptionUI(org.ensembl.mart.lib.config.FilterDescription, - * int) - */ - public Component getFilterDescriptionUI( - FilterDescription filterDescription, Object data) - throws MartServiceException { - QueryComponent component; - - String pointerDataset = filterDescription - .getAttribute("pointerDataset"); - MartDataset dataset = martDataset; - FilterDescription displayedFilter; - if (QueryConfigUtils.isReference(filterDescription, version)) { - dataset = QueryConfigUtils.getReferencedDataset(martService, - martDataset, filterDescription, version); - if (dataset == null) { - return null; - } - displayedFilter = QueryConfigUtils.getReferencedFilterDescription( - martService, dataset, filterDescription, version); - if (displayedFilter == null){ - return null; - } - filterDescription.setDisplayName(displayedFilter.getDisplayName()); - } else { - displayedFilter = filterDescription; - } - assert dataset != null; - - String type = displayedFilter.getType(); - if (type == null) { - type = "text";// default filter type - } - - if (type.equals("boolean") || type.equals("boolean_num")) { - component = new BooleanFilterComponent(displayedFilter, martDataset); - component.setPointerDataset(pointerDataset); - componentRegister.add(component); - } else if (type.endsWith("list") || type.endsWith("basic_filter") - || QueryConfigUtils.isList(displayedFilter)) { - if (type.equals("boolean_list") - || QueryConfigUtils.isBooleanList(displayedFilter)) { - Option[] options = displayedFilter.getOptions(); - List filters = new ArrayList(); - for (int i = 0; i < options.length; i++) { - FilterDescription booleanFilterDescription = new FilterDescription( - options[i]); - QueryComponent queryComponent = new BooleanFilterComponent( - booleanFilterDescription, martDataset); - queryComponent.setPointerDataset(pointerDataset); - filters.add(queryComponent); - componentRegister.add(queryComponent); - } - component = new BooleanListFilterComponent(displayedFilter, - martDataset, filters); - component.setPointerDataset(pointerDataset); - } else if (type.equals("id_list") - || QueryConfigUtils.isIdList(displayedFilter)) { - Option[] options = displayedFilter.getOptions(); - List<TextFilterComponent> filters = new ArrayList<TextFilterComponent>(); - for (int i = 0; i < options.length; i++) { - FilterDescription idFilterDescription = new FilterDescription( - options[i]); - idFilterDescription.setType("id_list"); - TextFilterComponent queryComponent = new TextFilterComponent( - idFilterDescription, martDataset); - queryComponent.setPointerDataset(pointerDataset); - filters.add(queryComponent); - componentRegister.add(queryComponent); - } - component = new IdListFilterComponent(displayedFilter, - martDataset, filters); - component.setPointerDataset(pointerDataset); - } else if (QueryConfigUtils.isNestedList(displayedFilter)) { - TextFilterComponent filterComponent = new TextFilterComponent( - displayedFilter, martDataset); - filterComponent.setPointerDataset(pointerDataset); - filterComponent.add(QueryConfigUtils.getOptionButton( - displayedFilter, filterComponent)); - component = filterComponent; - componentRegister.add(component); - } else { - ListFilterComponent filterComponent = new ListFilterComponent( - getDatasetConfig().getDataset(), displayedFilter, - martDataset, filterNameToComponentMap); - filterComponent.setPointerDataset(pointerDataset); - // map the component to a local dataset name as the 'ref' of a - // pushaction may be a local reference - filterNameToComponentMap.put(getDatasetConfig().getDataset() - + "." + displayedFilter.getInternalName(), - filterComponent); - // if the filter is a reference then also map the component to - // its referenced dataset name as the 'ref' of a pushaction may - // be a non-local reference - if (QueryConfigUtils.isReference(filterDescription, version)) { - filterNameToComponentMap.put(filterDescription - .getInternalName(), filterComponent); - } - component = filterComponent; - componentRegister.add(component); - } - } else { - String multipleValues = displayedFilter.getMultipleValues(); - if ("1".equals(multipleValues)) { - component = new MultipleTextFilterComponent(displayedFilter, martDataset); - } else { - component = new TextFilterComponent(displayedFilter, martDataset); - } - component.setPointerDataset(pointerDataset); - componentRegister.add(component); - // mapping for hard coded rules - filterNameToComponentMap.put(filterDescription.getInternalName(), - component); - } - - return component; - } - - private void registerComponents() { - for (Iterator iter = componentRegister.iterator(); iter.hasNext();) { - QueryComponent component = (QueryComponent) iter.next(); - controller.register(component); - } - } - - private void deregisterComponents() { - for (Iterator iter = componentRegister.iterator(); iter.hasNext();) { - QueryComponent component = (QueryComponent) iter.next(); - controller.deregister(component); - } - } - - /** - * - * @param inputPanel - * @param attributePanel - * @param filterPanel - */ - private void generateConfiguration( - final MartServiceQueryConfigUIFactory factory, - final SummaryPanel summaryPanel, final JComponent inputPanel, - final JComponent attributePanel, final JComponent filterPanel) { - final JProgressBar filterProgressBar = new JProgressBar(); - filterProgressBar.setIndeterminate(true); - filterProgressBar.setStringPainted(true); - filterProgressBar.setString("Fetching filter configuration"); - filterPanel.add(filterProgressBar); - - final JProgressBar attributeProgressBar = new JProgressBar(); - attributeProgressBar.setIndeterminate(true); - attributeProgressBar.setStringPainted(true); - attributeProgressBar.setString("Fetching attribute configuration"); - attributePanel.add(attributeProgressBar); - - new Thread("DatasetConfigUI") { - public void run() { - try { - - FilterPage[] filterPages = factory.getDatasetConfig() - .getFilterPages(); - AttributePage[] attributePages = factory.getDatasetConfig() - .getAttributePages(); - - final Component filterPagesComponent = factory - .getFilterPagesUI(filterPages, null); - final Component attributePagesComponent = factory - .getAttributePagesUI(attributePages, null); - - filterPanel.remove(filterProgressBar); - filterPanel.add(filterPagesComponent); - - attributePanel.remove(attributeProgressBar); - attributePanel.add(attributePagesComponent); - - factory.registerComponents(); - - factory.selectAttributePage(attributePages); - - } catch (MartServiceException e) { - logger.error("Error while fetching dataset configuration", e); - JTextArea textArea = new JTextArea(); - textArea - .append("Error while fetching dataset configuration\n\n"); - textArea.append(e.getMessage()); - inputPanel.removeAll(); - inputPanel.add(textArea); - } catch (Exception e) { - logger.error("Error while generating the Query Editor", e); - JTextArea textArea = new JTextArea(); - textArea - .append("Error while generating the Query Editor\n\n"); - textArea.append(e.toString()); - inputPanel.removeAll(); - inputPanel.add(textArea); - } finally { - inputPanel.revalidate(); - inputPanel.repaint(); - summaryPanel.updateDatasets(); - } - } - }.start(); - } - - private List<AttributeComponent> getAttributeComponents(Component component) { - List<AttributeComponent> attributeComponents = new ArrayList<AttributeComponent>(); - if (component instanceof AttributeComponent) { - attributeComponents.add((AttributeComponent) component); - } else if (component instanceof ExpandableBox) { - Component[] children = ((ExpandableBox) component).getComponents(); - for (int i = 0; i < children.length; i++) { - attributeComponents.addAll(getAttributeComponents(children[i])); - } - } else if (component instanceof Container) { - Component[] children = ((Container) component).getComponents(); - for (int i = 0; i < children.length; i++) { - attributeComponents.addAll(getAttributeComponents(children[i])); - } - } - return attributeComponents; - } - - private List<AttributeComponent> getSelectedAttributeComponents( - Component component) { - List<AttributeComponent> attributeComponents = new ArrayList<AttributeComponent>(); - if (component instanceof AttributeComponent) { - if (((AttributeComponent) component).isSelected()) { - attributeComponents.add((AttributeComponent) component); - } - } else if (component instanceof ExpandableBox) { - Component[] children = ((ExpandableBox) component).getComponents(); - for (int i = 0; i < children.length; i++) { - attributeComponents - .addAll(getSelectedAttributeComponents(children[i])); - } - } else if (component instanceof Container) { - Component[] children = ((Container) component).getComponents(); - for (int i = 0; i < children.length; i++) { - attributeComponents - .addAll(getSelectedAttributeComponents(children[i])); - } - } - return attributeComponents; - } - - private void selectAttributePage(AttributePage[] attributePages) { - int selectedAttributes = -1; - JRadioButton selectedButton = null; - Component selectedComponent = null; - - for (int i = 0; i < attributePages.length; i++) { - if (QueryConfigUtils.display(attributePages[i])) { - Component component = attributePageNameToComponent - .get(attributePages[i].getInternalName()); - JRadioButton button = attributePageNameToButton - .get(attributePages[i].getInternalName()); - if (component != null && button != null) { - int attributeCount = getSelectedAttributeComponents( - component).size(); - if (attributeCount > selectedAttributes) { - selectedAttributes = attributeCount; - selectedButton = button; - selectedComponent = component; - } - } - } - if (selectedButton != null && selectedComponent != null) { - selectedButton.setSelected(true); - } - } - } - - private List<String> getFormatList(AttributePage attributePage) { - List<String> formatList = new ArrayList<String>(); - for (String format : attributePage.getOutFormats() - .toUpperCase().split(",")) { - if (!"".equals(format)) { - formatList.add(format); - } - } - return formatList; - } - - private JComponent createHorizontalBox(Color background) { - // using a JPanel instead of a Box as a workaround for bug 4907674 - JPanel box = new JPanel(); - box.setLayout(new BoxLayout(box, BoxLayout.X_AXIS)); - box.setBackground(background); - return box; - } - - private JComponent createVerticalBox(Color background) { - // using a JPanel instead of a Box as a workaround for bug 4907674 - JPanel box = new JPanel(); - box.setLayout(new BoxLayout(box, BoxLayout.Y_AXIS)); - box.setBackground(background); - return box; - } - - private JComponent createBox(Component titleComponent, boolean fullBorder) { - JComponent box = createVerticalBox(componentBackgroundColor); - box.add(Box.createHorizontalStrut(400)); - if (fullBorder) { - box.setBorder(new CompoundBorder(new LineBorder(borderColor, 1), - new EmptyBorder(10, 10, 10, 10))); - } else { - box.setBorder(new CompoundBorder(new SideBorder06( - SwingConstants.TOP, borderColor), new EmptyBorder(5, 10, 0, - 10))); - } - if (titleComponent != null) { - JComponent labelBox = createHorizontalBox(componentBackgroundColor); - labelBox.add(titleComponent); - labelBox.add(Box.createHorizontalGlue()); - box.add(labelBox); - } - return box; - } - - private void setSummaryCount(Query query, String datasetName, JLabel label) - throws MartServiceException { - if ("".equals(label.getText())) { - String count = null; - String total = null; - Query countQuery = new Query(query); - countQuery.removeAllDatasets(); - countQuery.addDataset(new Dataset(datasetName)); - countQuery.setCount(1); - countQuery.setFormatter(null); - - Object[] results = martService.executeQuery(countQuery); - if (results.length == 1) { - if (results[0] instanceof List) { - List result = (List) results[0]; - if (result.size() >= 1) { - total = (String) result.get(0); - // test for biomart's 'let add a random blank line' - // thing - if ("".equals(total) && result.size() > 1) { - total = (String) result.get(1); - } - try { - Integer.parseInt(total); - } catch (NumberFormatException e) { - total = "?"; - } - } - } - } - Dataset dataset = query.getDataset(datasetName); - if (dataset != null && dataset.getFilters().size() > 0) { - Dataset countDataset = new Dataset(dataset); - countQuery.removeAllDatasets(); - countQuery.addDataset(countDataset); - results = martService.executeQuery(countQuery); - if (results.length == 1) { - if (results[0] instanceof List) { - List result = (List) results[0]; - if (result.size() >= 1) { - count = (String) result.get(0); - // test for biomart's 'let add a random blank - // line' thing - if ("".equals(count) && result.size() > 1) { - count = (String) result.get(1); - } - try { - Integer.parseInt(count); - } catch (NumberFormatException e) { - count = ""; - } - } - } - } - } else { - count = total; - } - - if (count != null && total != null) { - if (count.equals("")) { - label.setText("0 / " + total + " Genes"); - } else { - label.setText(count + " / " + total + " Genes"); - } - } - - } - } - - class TextFilterComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private JTextField textField; - - public TextFilterComponent(FilterDescription filterDescription, - MartDataset dataset) { - setConfigObject(filterDescription); - setDataset(dataset); - setName(filterDescription.getInternalName()); - setLayout(new MinimalLayout(MinimalLayout.HORIZONTAL)); - setBackground(componentBackgroundColor); - - textField = new JTextField(); - textField.setBackground(componentBackgroundColor); - textField.setPreferredSize(new Dimension(200, textField - .getPreferredSize().height + 4)); - - textField.getDocument().addDocumentListener(new DocumentListener() { - public void changedUpdate(DocumentEvent e) { - } - - public void insertUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), textField.getText())); - } - - public void removeUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), textField.getText())); - } - }); - - add(textField); - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryComponent#getType() - */ - public int getType() { - return FILTER; - } - - public void setValue(String value) { - textField.setText(value); - } - - public String getValue() { - return textField.getText(); - } - - } - - class MultipleTextFilterComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private JTextArea textArea; - - public MultipleTextFilterComponent(FilterDescription filterDescription, - MartDataset dataset) { - setConfigObject(filterDescription); - setDataset(dataset); - setName(filterDescription.getInternalName()); - setLayout(new MinimalLayout(MinimalLayout.HORIZONTAL)); - setBackground(componentBackgroundColor); - - textArea = new JTextArea(); - textArea.getDocument().addDocumentListener(new DocumentListener() { - public void changedUpdate(DocumentEvent e) { - } - - public void insertUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), getValue())); - } - - public void removeUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), getValue())); - } - }); - - final JFileChooser chooser = new JFileChooser(); - JButton chooserButton = new JButton("Browse..."); - chooserButton.setBackground(componentBackgroundColor); - chooserButton.setFont(chooserButton.getFont() - .deriveFont(Font.PLAIN)); - chooserButton.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) { - int returnVal = chooser - .showOpenDialog(MultipleTextFilterComponent.this); - if (returnVal == JFileChooser.APPROVE_OPTION) { - File file = chooser.getSelectedFile(); - if (file != null && file.exists() && file.canRead() - && !file.isDirectory()) { - StringBuffer buffer = new StringBuffer(); - BufferedReader in = null; - try { - in = new BufferedReader(new FileReader(file)); - String line = in.readLine(); - while (line != null) { - buffer.append(line); - buffer.append(QueryConfigUtils.LINE_END); - line = in.readLine(); - } - } catch (IOException e1) { - // no action - } finally { - if (in != null) { - try { - in.close(); - } catch (IOException e1) { - // give up - } - } - } - setValue(buffer.toString()); - } - } - } - }); - - JPanel buttonPanel = new JPanel(new BorderLayout()); - buttonPanel.setBackground(componentBackgroundColor); - buttonPanel.add(chooserButton, BorderLayout.WEST); - - JScrollPane textScrollPane = new JScrollPane(textArea); - textScrollPane.setBackground(componentBackgroundColor); - textScrollPane.setPreferredSize(new Dimension(200, 80)); - - add(textScrollPane, BorderLayout.CENTER); - add(buttonPanel, BorderLayout.SOUTH); - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryComponent#getType() - */ - public int getType() { - return FILTER; - } - - public void setValue(String value) { - textArea.setText(QueryConfigUtils.csvToValuePerLine(value)); - } - - public String getValue() { - return QueryConfigUtils.valuePerLineToCsv(textArea.getText()); - } - - } - - class ListFilterComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private DefaultComboBoxModel comboBoxModel = new DefaultComboBoxModel(); - - private JComboBox comboBox; - - private JTextField textField; - - private Map optionMap = new HashMap(); - - private List optionList = new ArrayList(); - - private String dataset; - - private Map componentMap; - - private String type; - - public ListFilterComponent(String refDataset, - FilterDescription filterDescription, MartDataset dataset, - Map componentMap) { - this.dataset = refDataset; - this.componentMap = componentMap; - setConfigObject(filterDescription); - setDataset(dataset); - setName(filterDescription.getInternalName()); - setLayout(new BorderLayout()); - setBackground(componentBackgroundColor); - - Option[] options = filterDescription.getOptions(); - // if there are no options but there is a default value then use the - // default value as an option - if (options.length == 0) { - String defaultValue = filterDescription.getDefaultValue(); - if (defaultValue != null) { - Option newOption = new Option(); - newOption.setInternalName(defaultValue); - newOption.setDisplayName(defaultValue); - newOption.setValue(defaultValue); - newOption.setSelectable("true"); - options = new Option[] { newOption }; - } - } - - textField = new JTextField(); - textField.setBackground(componentBackgroundColor); - textField.setPreferredSize(new Dimension(200, textField - .getPreferredSize().height + 4)); - - textField.getDocument().addDocumentListener(new DocumentListener() { - public void changedUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), textField.getText())); - } - - public void insertUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), textField.getText())); - } - - public void removeUpdate(DocumentEvent e) { - fireFilterChanged(new QueryComponentEvent(this, getName(), - getDataset(), textField.getText())); - } - }); - - comboBox = new JComboBox(); - comboBox.setFont(comboBox.getFont().deriveFont(Font.PLAIN)); - comboBox.setBackground(componentBackgroundColor); - comboBox.setModel(comboBoxModel); - - if (options.length == 0) { - add(textField, BorderLayout.WEST); - type = "text"; - } else { - add(comboBox, BorderLayout.WEST); - type = "list"; - } - - setOptions(options); - // comboBox.setSelectedIndex(-1); - - comboBox.addItemListener(new ItemListener() { - - public void itemStateChanged(ItemEvent e) { - if (e.getStateChange() == ItemEvent.SELECTED) { - Option option = (Option) optionList.get(comboBox - .getSelectedIndex()); - optionSelected(option); - ListFilterComponent.super.setValue(option.getValue()); - fireFilterChanged(new QueryComponentEvent(this, - getName(), getDataset(), option.getValue())); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - Option option = (Option) optionMap.get(getValue()); - if (option != null) { - optionDeselected(option); - } - fireFilterChanged(new QueryComponentEvent(this, - getName(), getDataset(), "")); - } - } - - }); - - } - - public void setOptions(Option[] options) { - clearOptions(); - for (int i = 0; i < options.length; i++) { - if (options[i].getHidden() == null - || !options[i].getHidden().equals("true")) { - optionMap.put(options[i].getValue(), options[i]); - optionList.add(options[i]); - String displayName = options[i].getDisplayName(); - if (displayName != null) { - comboBoxModel.addElement(QueryConfigUtils - .truncateName(displayName)); - } - } - } - if (optionList.size() > 0) { - if ("text".equals(type)) { - removeAll(); - add(comboBox, BorderLayout.WEST); - type = "list"; - revalidate(); - repaint(); - } - setValue(((Option) optionList.get(0)).getValue()); - } else { - if ("list".equals(type)) { - removeAll(); - add(textField, BorderLayout.WEST); - type = "text"; - revalidate(); - repaint(); - } - } - } - - private void clearOptions() { - comboBox.setSelectedIndex(-1); - comboBoxModel.removeAllElements(); - optionMap.clear(); - optionList.clear(); - } - - public void setValue(String value) { - if ("list".equals(type)) { - if (value == null) { - if (getValue() != null) { - optionDeselected((Option) optionMap.get(getValue())); - comboBox.setSelectedIndex(-1); - } - } else { - if (getValue() != null) { - Option option = (Option) optionMap.get(getValue()); - if (option != null) { - optionDeselected(option); - } - } - Option option = (Option) optionMap.get(value); - if (option != null) { - optionSelected(option); - } - int index = optionList.indexOf(option); - comboBox.setSelectedIndex(index); - } - } else if ("text".equals(type)) { - textField.setText(value); - } - super.setValue(value); - } - - private void optionSelected(Option option) { - if (option == null) { - logger.info("null option for " + getName()); - } else { - PushAction[] pushActions = option.getPushActions(); - for (int i = 0; i < pushActions.length; i++) { - QueryComponent queryComponent = getReferencedComponent(pushActions[i]); - if (queryComponent instanceof ListFilterComponent) { - ListFilterComponent filterComponent = (ListFilterComponent) queryComponent; - if (filterComponent != null) { - filterComponent.setOptions(pushActions[i] - .getOptions()); - } - } - } - } - } - - private void optionDeselected(Option option) { - PushAction[] pushActions = option.getPushActions(); - for (int i = 0; i < pushActions.length; i++) { - QueryComponent queryComponent = getReferencedComponent(pushActions[i]); - if (queryComponent instanceof ListFilterComponent) { - ListFilterComponent filterComponent = (ListFilterComponent) queryComponent; - if (filterComponent != null) { - filterComponent.clearOptions(); - } - } - } - } - - private QueryComponent getReferencedComponent(PushAction pushAction) { - String ref = pushAction.getRef(); - if (ref.indexOf('.') == -1) { - return (QueryComponent) componentMap.get(dataset + "." + ref); - } else { - return (QueryComponent) componentMap.get(ref); - } - } - - /* - * (non-Javadoc) - * - * @see org.embl.ebi.escience.scuflworkers.biomartservice.config.QueryComponent#getType() - */ - public int getType() { - return FILTER; - } - } - - class IdListFilterComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private DefaultComboBoxModel comboBoxModel = new DefaultComboBoxModel(); - - private JComboBox comboBox; - - private JTextArea textArea; - - private Map<String, QueryComponent> componentMap = new HashMap<String, QueryComponent>(); - - private List<String> filterList = new ArrayList<String>(); - - private int currentIndex; - - private boolean valueChanging; - - public IdListFilterComponent(FilterDescription description, - MartDataset dataset, List<TextFilterComponent> filterComponentList) { - setLayout(new MinimalLayout(MinimalLayout.VERTICAL)); - setBackground(componentBackgroundColor); - - comboBox = new JComboBox(); - comboBox.setFont(comboBox.getFont().deriveFont(Font.PLAIN)); - comboBox.setBackground(componentBackgroundColor); - comboBox.setModel(comboBoxModel); - - for (TextFilterComponent filterComponent : filterComponentList) { - BaseNamedConfigurationObject filterDescription = filterComponent - .getConfigObject(); - componentMap.put(filterDescription.getInternalName(), - filterComponent); - filterList.add(filterDescription.getInternalName()); - comboBoxModel.addElement(filterDescription.getDisplayName()); - filterToDisplayName.put(filterDescription.getInternalName(), - filterDescription.getDisplayName()); - filterComponent - .addQueryComponentListener(new QueryComponentAdapter() { - public void filterAdded(QueryComponentEvent event) { - if (!valueChanging) { - valueChanging = true; - comboBox.setSelectedIndex(filterList - .indexOf(event.getName())); - selectorButton.setSelected(true); - valueChanging = false; - } - } - - public void filterRemoved(QueryComponentEvent event) { - if (!valueChanging) { - valueChanging = true; - selectorButton.setSelected(false); - valueChanging = false; - } - } - - public void filterChanged(QueryComponentEvent event) { - if (!valueChanging) { - valueChanging = true; - textArea - .setText(QueryConfigUtils - .csvToValuePerLine(event - .getValue())); - valueChanging = false; - } - } - }); - filterComponent.setSelectorButton(new JCheckBox()); - } - - comboBox.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - int selectedIndex = comboBox.getSelectedIndex(); - if (selectorButton.isSelected()) { - if (e.getStateChange() == ItemEvent.SELECTED) { - if (!valueChanging) { - valueChanging = true; - QueryComponent queryComponent = componentMap - .get(filterList.get(selectedIndex)); - queryComponent.setValue(QueryConfigUtils - .valuePerLineToCsv(textArea.getText())); - queryComponent.setSelected(true); - valueChanging = false; - } - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - if (!valueChanging) { - valueChanging = true; - componentMap.get(filterList - .get(currentIndex)).setSelected(false); - valueChanging = false; - } - } - } - currentIndex = selectedIndex; - } - }); - - textArea = new JTextArea(); - textArea.getDocument().addDocumentListener(new DocumentListener() { - public void changedUpdate(DocumentEvent e) { - } - - public void insertUpdate(DocumentEvent e) { - updateValue(); - } - - public void removeUpdate(DocumentEvent e) { - updateValue(); - } - - private void updateValue() { - if (!valueChanging) { - valueChanging = true; - int selectedIndex = comboBox.getSelectedIndex(); - String value = QueryConfigUtils - .valuePerLineToCsv(textArea.getText()); - componentMap.get(filterList - .get(selectedIndex)).setValue(value); - valueChanging = false; - } - } - }); - - final JFileChooser chooser = new JFileChooser(); - JButton chooserButton = new JButton("Browse..."); - chooserButton.setBackground(componentBackgroundColor); - chooserButton.setFont(chooserButton.getFont() - .deriveFont(Font.PLAIN)); - chooserButton.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) { - int returnVal = chooser - .showOpenDialog(IdListFilterComponent.this); - if (returnVal == JFileChooser.APPROVE_OPTION) { - File file = chooser.getSelectedFile(); - if (file != null && file.exists() && file.canRead() - && !file.isDirectory()) { - StringBuffer buffer = new StringBuffer(); - BufferedReader in = null; - try { - in = new BufferedReader(new FileReader(file)); - String line = in.readLine(); - while (line != null) { - buffer.append(line); - buffer.append(QueryConfigUtils.LINE_END); - line = in.readLine(); - } - } catch (IOException e1) { - // no action - } finally { - if (in != null) { - try { - in.close(); - } catch (IOException e1) { - // give up - } - } - } - textArea.setText(buffer.toString()); - } - } - } - }); - - JPanel buttonPanel = new JPanel(new BorderLayout()); - buttonPanel.setBackground(componentBackgroundColor); - buttonPanel.add(chooserButton, BorderLayout.WEST); - - JScrollPane textScrollPane = new JScrollPane(textArea); - textScrollPane.setBackground(componentBackgroundColor); - textScrollPane.setPreferredSize(new Dimension(200, 80)); - - add(comboBox, BorderLayout.NORTH); - add(textScrollPane, BorderLayout.CENTER); - add(buttonPanel, BorderLayout.SOUTH); - - } - - public void setSelectorButton(AbstractButton button) { - selectorButton = button; - button.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - int selectedIndex = comboBox.getSelectedIndex(); - if (e.getStateChange() == ItemEvent.SELECTED) { - if (!valueChanging) { - valueChanging = true; - QueryComponent queryComponent = componentMap - .get(filterList.get(selectedIndex)); - queryComponent.setValue(QueryConfigUtils - .valuePerLineToCsv(textArea.getText())); - queryComponent.setSelected(true); - valueChanging = false; - } - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - if (!valueChanging) { - valueChanging = true; - componentMap.get(filterList - .get(selectedIndex)).setSelected(false); - valueChanging = false; - } - } - } - }); - - } - - public int getType() { - return FILTER; - } - - } - - class BooleanListFilterComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private DefaultComboBoxModel comboBoxModel = new DefaultComboBoxModel(); - - private JComboBox comboBox; - - private BooleanFilterComponent booleanFilterComponent; - - private Map componentMap = new HashMap(); - - private List<String> filterList = new ArrayList<String>(); - - private int currentIndex; - - public BooleanListFilterComponent(FilterDescription description, - MartDataset dataset, List filterComponentList) { - setLayout(new MinimalLayout(MinimalLayout.HORIZONTAL)); - setBackground(componentBackgroundColor); - - comboBox = new JComboBox(); - comboBox.setFont(comboBox.getFont().deriveFont(Font.PLAIN)); - comboBox.setBackground(componentBackgroundColor); - comboBox.setModel(comboBoxModel); - - for (Iterator iter = filterComponentList.iterator(); iter.hasNext();) { - BooleanFilterComponent filterComponent = (BooleanFilterComponent) iter - .next(); - BaseNamedConfigurationObject filterDescription = filterComponent - .getConfigObject(); - componentMap.put(filterDescription.getInternalName(), - filterComponent); - filterList.add(filterDescription.getInternalName()); - comboBoxModel.addElement(filterDescription.getDisplayName()); - filterToDisplayName.put(filterDescription.getInternalName(), - filterDescription.getDisplayName()); - filterComponent - .addQueryComponentListener(new QueryComponentAdapter() { - public void filterAdded(QueryComponentEvent event) { - comboBox.setSelectedIndex(filterList - .indexOf(event.getName())); - selectorButton.setSelected(true); - } - - public void filterChanged(QueryComponentEvent event) { - booleanFilterComponent.setValue(event - .getValue()); - } - }); - filterComponent.setSelectorButton(new JCheckBox()); - } - - comboBox.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - int selectedIndex = comboBox.getSelectedIndex(); - if (selectorButton.isSelected()) { - if (e.getStateChange() == ItemEvent.SELECTED) { - QueryComponent queryComponent = (QueryComponent) componentMap - .get(filterList.get(selectedIndex)); - queryComponent.setValue(booleanFilterComponent - .getValue()); - queryComponent.setSelected(true); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - ((QueryComponent) componentMap.get(filterList - .get(currentIndex))).setSelected(false); - } - } - currentIndex = selectedIndex; - } - }); - - booleanFilterComponent = new BooleanFilterComponent( - new FilterDescription(), dataset); - booleanFilterComponent - .addQueryComponentListener(new QueryComponentAdapter() { - public void filterChanged(QueryComponentEvent event) { - int selectedIndex = comboBox.getSelectedIndex(); - ((QueryComponent) componentMap.get(filterList - .get(selectedIndex))).setValue(event - .getValue()); - } - }); - - JPanel comboBoxPanel = new JPanel(new MinimalLayout()); - comboBoxPanel.setBackground(componentBackgroundColor); - comboBoxPanel.setBorder(new EmptyBorder(5, 5, 0, 0)); - add(comboBox); - add(booleanFilterComponent); - } - - public void setSelectorButton(AbstractButton button) { - selectorButton = button; - button.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - int selectedIndex = comboBox.getSelectedIndex(); - if (e.getStateChange() == ItemEvent.SELECTED) { - QueryComponent queryComponent = (QueryComponent) componentMap - .get(filterList.get(selectedIndex)); - queryComponent.setValue(booleanFilterComponent - .getValue()); - queryComponent.setSelected(true); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - ((QueryComponent) componentMap.get(filterList - .get(selectedIndex))).setSelected(false); - } - } - }); - } - - public int getType() { - return FILTER; - } - - } - - class BooleanFilterComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private static final String ONLY = "only"; - - private static final String EXCLUDED = "excluded"; - - private ButtonGroup buttonGroup = new ButtonGroup(); - - private JRadioButton only; - - private JRadioButton excluded; - - public BooleanFilterComponent(FilterDescription filterDescription, - MartDataset dataset) { - setConfigObject(filterDescription); - setDataset(dataset); - setName(filterDescription.getInternalName()); - setBackground(componentBackgroundColor); - - setLayout(new BoxLayout(this, BoxLayout.Y_AXIS)); - setBackground(componentBackgroundColor); - - only = new JRadioButton("Only"); - only.setFont(only.getFont().deriveFont(Font.PLAIN)); - only.setBackground(componentBackgroundColor); - only.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - if (e.getStateChange() == ItemEvent.SELECTED) { - fireFilterChanged(new QueryComponentEvent(this, - getName(), getDataset(), ONLY)); - } - } - }); - buttonGroup.add(only); - add(only); - - excluded = new JRadioButton("Excluded"); - excluded.setFont(excluded.getFont().deriveFont(Font.PLAIN)); - excluded.setBackground(componentBackgroundColor); - excluded.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - if (e.getStateChange() == ItemEvent.SELECTED) { - fireFilterChanged(new QueryComponentEvent(this, - getName(), getDataset(), EXCLUDED)); - } - } - }); - buttonGroup.add(excluded); - add(excluded); - - setValue(filterDescription.getQualifier()); - } - - public int getType() { - return FILTER; - } - - public String getValue() { - if (excluded.isSelected()) { - return EXCLUDED; - } else { - return ONLY; - } - } - - public void setValue(String value) { - if (EXCLUDED.equals(value)) { - excluded.setSelected(true); - } else { - only.setSelected(true); - } - } - - } - - class AttributeComponent extends QueryComponent { - private static final long serialVersionUID = 1L; - - private AbstractButton button; - - private AbstractButton offButton; - - public AttributeComponent( - BaseNamedConfigurationObject attributeDescription, - MartDataset dataset, Object offButton) { - this.offButton = (AbstractButton) offButton; - setConfigObject(attributeDescription); - setDataset(dataset); - setName(attributeDescription.getInternalName()); - if (attributeDescription instanceof AttributeList) { - setValue(((AttributeList) attributeDescription).getAttributes()); - } - setLayout(new BorderLayout()); - setBackground(componentBackgroundColor); - // if there's no display name the attribute isn't displayed - String displayName = attributeDescription.getDisplayName(); - if (displayName != null) { - attributeToDisplayName.put(attributeDescription - .getInternalName(), displayName); - if (offButton != null) { - button = new JRadioButton(QueryConfigUtils - .splitSentence(displayName)); - } else { - button = new JCheckBox(QueryConfigUtils - .splitSentence(displayName)); - } - button.setFont(button.getFont().deriveFont(Font.PLAIN)); - button.setBackground(componentBackgroundColor); - setSelectorButton(button); - - String description = attributeDescription.getDescription(); - if (description != null) { - button.setToolTipText(description); - } - - add(button, BorderLayout.WEST); - - button.addItemListener(new ItemListener() { - public void itemStateChanged(ItemEvent e) { - if (!settingAttributeState) { - settingAttributeState = true; - List attributes = (List) attributeNameToComponentMap - .get(getQualifiedName()); - if (attributes != null) { - for (Iterator iter = attributes.iterator(); iter - .hasNext();) { - AttributeComponent attribute = (AttributeComponent) iter - .next(); - if (attribute != AttributeComponent.this) { - if (e.getStateChange() == ItemEvent.SELECTED) { - attribute.setSelected(true); - } else if (e.getStateChange() == ItemEvent.DESELECTED) { - attribute.setSelected(false); - } - } - } - } - settingAttributeState = false; - } - } - }); - } - } - - public int getType() { - return ATTRIBUTE; - } - - public void setSelected(boolean selected) { - if (offButton != null) { - if (selected) { - button.setSelected(true); - } else { - offButton.setSelected(true); - } -
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