http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/fragments/workflowdetails/WorkflowdetailFragment.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/fragments/workflowdetails/WorkflowdetailFragment.java b/app/src/main/java/org/apache/taverna/mobile/fragments/workflowdetails/WorkflowdetailFragment.java deleted file mode 100644 index 9835c04..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/fragments/workflowdetails/WorkflowdetailFragment.java +++ /dev/null @@ -1,811 +0,0 @@ -package org.apache.taverna.mobile.fragments.workflowdetails; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import com.dropbox.client2.DropboxAPI; -import com.dropbox.client2.ProgressListener; -import com.dropbox.client2.android.AndroidAuthSession; -import com.dropbox.client2.exception.DropboxException; -import com.dropbox.client2.session.AppKeyPair; - -import org.apache.taverna.mobile.R; -import org.apache.taverna.mobile.activities.DashboardMainActivity; -import org.apache.taverna.mobile.adapters.WorkflowAdapter; -import org.apache.taverna.mobile.tavernamobile.TavernaPlayerAPI; -import org.apache.taverna.mobile.tavernamobile.User; -import org.apache.taverna.mobile.tavernamobile.Workflow; -import org.apache.taverna.mobile.utils.DetailsLoader; -import org.apache.taverna.mobile.utils.RunTask; -import org.apache.taverna.mobile.utils.WorkflowDB; -import org.apache.taverna.mobile.utils.WorkflowDownloadManager; -import org.json.JSONArray; -import org.json.JSONException; -import org.json.JSONObject; - -import android.app.Activity; -import android.app.AlertDialog; -import android.app.DownloadManager; -import android.app.LoaderManager; -import android.app.ProgressDialog; -import android.content.Context; -import android.content.DialogInterface; -import android.content.Loader; -import android.content.SharedPreferences; -import android.content.res.Resources; -import android.graphics.Bitmap; -import android.graphics.BitmapFactory; -import android.net.Uri; -import android.os.AsyncTask; -import android.os.Bundle; -import android.preference.PreferenceManager; -import android.support.v4.app.Fragment; -import android.util.Base64; -import android.util.Log; -import android.view.LayoutInflater; -import android.view.View; -import android.view.ViewGroup; -import android.view.animation.Animation; -import android.view.animation.AnimationUtils; -import android.widget.Button; -import android.widget.EditText; -import android.widget.ImageView; -import android.widget.LinearLayout; -import android.widget.ScrollView; -import android.widget.TextView; -import android.widget.Toast; - -import java.io.BufferedReader; -import java.io.DataOutputStream; -import java.io.File; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.net.HttpURLConnection; -import java.net.MalformedURLException; -import java.net.URL; -import java.nio.charset.Charset; -import java.text.SimpleDateFormat; -import java.util.ArrayList; -import java.util.Date; - -/** - * Created by Larry Akah on 6/9/15. - */ -public class WorkflowdetailFragment extends Fragment implements View.OnClickListener, - LoaderManager.LoaderCallbacks<Workflow> { - /** - * The fragment argument representing the section number for this - * fragment. - */ - private static final String TAG = "WorkflowdetailFragment"; - private static final String ARG_SECTION_NUMBER = "section_number"; - private static final String BOX_APP_KEY = "doicbvkfyzligh2"; - private static final String BOX_APP_SECRET = "3uuuw36mm7jkflc"; - public static String mWorkfloId = ""; - public static Context cont; - static View rootView; - static Animation zoomin; - static Animation zoomout; - static Workflow currentWorkflow = null; - private static ProgressDialog progressDialog; - private static String download_url; - public String workflow_uri; - public AlertDialog runDialog; - public AlertDialog.Builder alertDialogBuilder; - public boolean isZoomIn; - SharedPreferences sharedPreferences; - private boolean mLoadState = false; - private boolean mDropupload = false; - private DownloadManager downloadManager; - private long wid; - - private DropboxAPI<AndroidAuthSession> mDBApi; - - public WorkflowdetailFragment() { - } - - /** - * Returns a new instance of this fragment for the given section - * number. - */ - public static WorkflowdetailFragment newInstance(int sectionNumber) { - WorkflowdetailFragment fragment = new WorkflowdetailFragment(); - Bundle args = new Bundle(); - args.putInt(ARG_SECTION_NUMBER, sectionNumber); - fragment.setArguments(args); - return fragment; - } - - - public static void setWorkflowDetails(final Workflow wk) { - currentWorkflow = wk; - final TextView author = (TextView) rootView.findViewById(R.id.wkf_author_text); - //final TextView updated = (TextView) rootView.findViewById(R.id.wupdatedat); - final TextView type = (TextView) rootView.findViewById(R.id.wtype); - final TextView title = (TextView) rootView.findViewById(R.id.wtitle); - final TextView desc = (TextView) rootView.findViewById(R.id.wdescription); - final TextView createdat = (TextView) rootView.findViewById(R.id.wcreatedat); - final ImageView preview = (ImageView) rootView.findViewById(R.id.wkf_image); - //mWorkfloId = wk.getWorkflowTitle(); - ((Activity) cont).runOnUiThread(new Runnable() { - @Override - public void run() { - //load necessary widgets - - //set widget data - //Use android resources to insert text into placeholder - Resources resources = cont.getResources(); - User uploader = wk.getUploader(); - //String uploaderText = String.format(resources.getString(R.string - // .workflow_author), uploader != null ? uploader.getName():"Unknown"); - author.setText((uploader != null) ? uploader.getName() : "Unknown"); - title.setText(wk.getWorkflowTitle()); - if (wk.getWorkflowDescription() != null) { - desc.setText(wk.getWorkflowDescription()); - } else { - //desc.setVisibility(View.INVISIBLE); //Not sure I trust this! Needs - // investigating. - } - String createdAtText = String.format(resources.getString(R.string.created), wk - .getWorkflowDatecreated()); - createdat.setText(createdAtText); - //updated.setText("Workflow Description"); - String typeText = String.format(resources.getString(R.string.workflow_type_text), - wk.getWorkflowType()); - type.setText(typeText); - - //preview.setImageURI(Uri.parse(wk.getWorkflowPreview())); - new LoadImageThread(preview, wk.getWorkflowPreview()).execute(); - download_url = wk.getWorkflowRemoteUrl(); - zoomin.setAnimationListener(new Animation.AnimationListener() { - - @Override - public void onAnimationStart(Animation arg0) { - // TODO Auto-generated method stub - preview.startAnimation(zoomout); - } - - @Override - public void onAnimationRepeat(Animation arg0) { - // TODO Auto-generated method stub - - } - - @Override - public void onAnimationEnd(Animation arg0) { - preview.startAnimation(zoomout); - - } - }); - zoomout.setAnimationListener(new Animation.AnimationListener() { - - @Override - public void onAnimationStart(Animation arg0) { - // TODO Auto-generated method stub - preview.startAnimation(zoomin); - } - - @Override - public void onAnimationRepeat(Animation arg0) { - // TODO Auto-generated method stub - - } - - @Override - public void onAnimationEnd(Animation arg0) { - preview.startAnimation(zoomin); - - } - }); - progressDialog.dismiss(); - } - }); - // preview.setOnClickListener(WorkflowdetailFragment.getInstance()); - } - - public static void setProgressDialog(Context context) { - WorkflowdetailFragment.progressDialog = new ProgressDialog(context); - } - - public static void setRootView(View rootView) { - WorkflowdetailFragment.rootView = rootView; - } - - public static void setCont(Context cont) { - WorkflowdetailFragment.cont = cont; - } - - @Override - public View onCreateView(LayoutInflater inflater, ViewGroup container, Bundle - savedInstanceState) { - - AppKeyPair appKeys = new AppKeyPair(BOX_APP_KEY, BOX_APP_SECRET); - AndroidAuthSession session = new AndroidAuthSession(appKeys); - mDBApi = new DropboxAPI<AndroidAuthSession>(session); - // long workflowid = getActivity().getIntent().getLongExtra("workflowid", 0); - setRootView(inflater.inflate(R.layout.fragment_workflow_detail, - container, false)); - setProgressDialog(getActivity()); - progressDialog.setMessage(getActivity().getResources().getString(R.string.loading)); - progressDialog.setCancelable(false); - // mWorkfloId = workflowid; - zoomin = AnimationUtils.loadAnimation(getActivity(), R.anim.zoomin); - zoomout = AnimationUtils.loadAnimation(getActivity(), R.anim.zoomout); - - isZoomIn = false; - sharedPreferences = PreferenceManager.getDefaultSharedPreferences(getActivity()); - wid = getActivity().getIntent().getLongExtra("wid", 0); - Button createRun = (Button) rootView.findViewById(R.id.run_wk); - createRun.setOnClickListener(this); - Button download = (Button) rootView.findViewById(R.id.download_wk); - download.setOnClickListener(this); - Button mark_workflow = (Button) rootView.findViewById(R.id.mark_wk); - mark_workflow.setOnClickListener(this); - final String favs = sharedPreferences.getString(WorkflowAdapter.FAVORITE_LIST_DB, ""); - String[] ids = favs.split(","); - if (ids.length > 0) { - for (String id : ids) { - if (id.equalsIgnoreCase("" + wid)) { - mark_workflow.setBackgroundResource(R.drawable - .abc_list_selector_disabled_holo_light); - break; - } - } - } - rootView.findViewById(R.id.saveToDropboxButton).setOnClickListener(this); - rootView.findViewById(R.id.saveToGoogleDriveButton).setOnClickListener(this); - (rootView.findViewById(R.id.wkf_image)).setOnLongClickListener(new View - .OnLongClickListener() { - @Override - public boolean onLongClick(View view) { - view.setAnimation(zoomin); - return true; - } - }); - downloadManager = (DownloadManager) getActivity().getSystemService(Context - .DOWNLOAD_SERVICE); - return rootView; - } - - /** - * Called when a fragment is first attached to its activity. - * {@link #onCreate(android.os.Bundle)} will be called after this. - */ - //@Override - //public void onAttach(Activity activity) { - // super.onAttach(activity); - // cont = getActivity(); - //} - @Override - public void onAttach(Context context) { - super.onAttach(context); - setCont(getActivity()); - } - - @Override - public void onClick(View view) { - switch (view.getId()) { - case R.id.run_wk: - if (((TextView) rootView.findViewById(R.id.wtype)).getText().toString().contains - ("Taverna 2")) { - new WorkflowProcessTask(getActivity()).execute(download_url); - } else { - Toast.makeText(getActivity(), "Sorry! Only Taverna 2 workflows can be run.", - Toast.LENGTH_LONG).show(); - } - break; - case R.id.download_wk: - // start the android Download manager to start downloading a remote workflow file - WorkflowDownloadManager dmgr = new WorkflowDownloadManager(getActivity(), - downloadManager); - try { - dmgr.downloadWorkflow(new File(PreferenceManager.getDefaultSharedPreferences - (getActivity()).getString( - DashboardMainActivity.APP_DIRECTORY_NAME, "/")), - download_url); - } catch (Exception e) { - Log.e(TAG, "onClick: ", e); - } - - break; - case R.id.mark_wk: - - ArrayList<Object> mfav = new ArrayList<Object>(); - String favs = sharedPreferences.getString(WorkflowAdapter.FAVORITE_LIST_DB, ""); - //save current workflow as favorite - mfav.add(currentWorkflow.getId()); - mfav.add(currentWorkflow.getWorkflowAuthor()); - mfav.add(currentWorkflow.getWorkflowTitle()); - mfav.add(currentWorkflow.getWorkflowDescription()); - mfav.add(SimpleDateFormat.getDateTimeInstance().format(new Date()).toString()); - mfav.add(currentWorkflow.getWorkflowDetailsUrl()); - mfav.add(((TextView) rootView.findViewById(R.id.wkf_author)).getText()); - int result = new WorkflowDB(getActivity(), WorkflowAdapter - .WORKFLOW_FAVORITE_KEY).insert(mfav); - if (result > 0) { - sharedPreferences.edit().putString(WorkflowAdapter.FAVORITE_LIST_DB, favs + - wid + ",").apply(); - Toast.makeText(getActivity(), "Workflow marked as favorite", Toast - .LENGTH_SHORT).show(); - view.setBackgroundResource(R.drawable.abc_list_selector_disabled_holo_light); - - } else if (result == -1) { - Toast.makeText(getActivity(), "Sorry! This workflow has already been marked " + - "as a favourite", Toast.LENGTH_SHORT).show(); - } else { - Toast.makeText(getActivity(), "Error!, please try again", Toast.LENGTH_SHORT) - .show(); - } - break; - case R.id.saveToDropboxButton: - String authToken = PreferenceManager.getDefaultSharedPreferences(getActivity()) - .getString("dropboxauth", ""); - if (authToken.isEmpty()) { - mDBApi.getSession().startOAuth2Authentication(getActivity()); - } else { - mDBApi.getSession().setOAuth2AccessToken(authToken); - new WorkflowDriveUpload().execute(download_url); - } - break; - case R.id.saveToGoogleDriveButton: - break; - } - } - - /** - * Called when the fragment is visible to the user and actively running. - * This is generally - * tied to {@link android.app.Activity#onResume() Activity.onResume} of the containing - * Activity's lifecycle. - */ - @Override - public void onResume() { - super.onResume(); - if (!mLoadState) - workflow_uri = getActivity().getIntent().getStringExtra("uri"); - - getActivity().getLoaderManager().initLoader(1, null, this).forceLoad(); - - if (mDBApi.getSession().authenticationSuccessful() && !mDropupload) { - try { - // Required to complete auth, sets the access token on the session - mDBApi.getSession().finishAuthentication(); - String accessToken = mDBApi.getSession().getOAuth2AccessToken(); - PreferenceManager.getDefaultSharedPreferences(getActivity()).edit().putString - ("dropboxauth", accessToken).commit(); - new WorkflowDriveUpload().execute(download_url); - } catch (IllegalStateException e) { - Log.i("DbAuthLog", "Error authenticating", e); - } - } - } - - @Override - public void onSaveInstanceState(Bundle outState) { - super.onSaveInstanceState(outState); - mLoadState = true; - } - - @Override - public Loader<Workflow> onCreateLoader(int i, Bundle bundle) { - progressDialog.show(); - return new DetailsLoader(getActivity(), - DetailsLoader.LoadType.TYPE_WORKFLOW_DETAIL, - workflow_uri); - } - - @Override - public void onLoadFinished(Loader<Workflow> workflowLoader, Workflow workflow) { - - } - - @Override - public void onLoaderReset(Loader<Workflow> workflowLoader) { - workflowLoader.reset(); - } - - //create and return a new TextView - public TextView createTextView(Context mcontext, String placeholder) { - TextView tv = new TextView(mcontext); - tv.setText(placeholder); - tv.setMinLines(2); - - return tv; - } - - //create and return a new EdiText view - public EditText createEditText(Context ctx, int i) { - EditText edt; - edt = new EditText(ctx); - edt.setHint("Enter Value"); - edt.setMinLines(1); - edt.setId(i); - return edt; - } - - private static class LoadImageThread extends AsyncTask<String, Void, Bitmap> { - ImageView imageView; - String src; - - public LoadImageThread(ImageView image, String source) { - imageView = image; - src = source; - } - - @Override - protected Bitmap doInBackground(String... strings) { - Bitmap myBitmap = null; - try { - URL url = new URL(src); - HttpURLConnection connection = null; - connection = (HttpURLConnection) url.openConnection(); - connection.setDoInput(true); - connection.connect(); - InputStream input = connection.getInputStream(); - myBitmap = BitmapFactory.decodeStream(input); -// imageView.setImageBitmap(myBitmap); - } catch (IOException e) { - Log.e(TAG, "doInBackground: ", e); - } - return myBitmap; - } - - @Override - protected void onPostExecute(Bitmap bitmap) { - imageView.setImageBitmap(bitmap); - } - } - - //fetch and compute the framework on which the run inputs are to be built and entered - private class WorkflowRunTask extends AsyncTask<String, Void, String> { - - TavernaPlayerAPI tavernaPlayerAPI = new TavernaPlayerAPI(); - private Context context; - - private WorkflowRunTask(Context context) { - this.context = context; - } - - @Override - protected void onPreExecute() { - super.onPreExecute(); - progressDialog.setMessage(this.context.getResources().getString(R.string.fetchrun)); - progressDialog.show(); - } - - @Override - protected String doInBackground(String... params) { - StringBuffer sb = new StringBuffer(); - try { - - URL workflowurl = new URL(new TavernaPlayerAPI(this.context) - .mPlayerRunFrameworkUrl + params[0]); - HttpURLConnection connection = (HttpURLConnection) workflowurl.openConnection(); - String userpass = tavernaPlayerAPI.getPlayerUserName(this.context) + ":" + - tavernaPlayerAPI.getPlayerUserPassword(this.context); - String basicAuth = "Basic " + Base64.encodeToString(userpass.getBytes(Charset - .forName("UTF-8")), Base64 - .DEFAULT); - - connection.setRequestProperty("Authorization", basicAuth); - connection.setRequestProperty("Accept", "application/json"); - connection.setRequestMethod("GET"); - // connection.setDoInput(true); - // connection.setDoOutput(true); - connection.connect(); //send request - Log.i("RESPONSE Code", "" + connection.getResponseCode()); - Log.i("RESPONSE Messsage", "" + connection.getResponseMessage()); - Log.i("Authorization ", "" + connection.getRequestProperty("Authorization")); - - InputStream dis = connection.getInputStream(); - BufferedReader br = new BufferedReader(new InputStreamReader(dis, "UTF-8")); - - String jsonData = ""; - while ((jsonData = br.readLine()) != null) { - sb.append(jsonData); - } - dis.close(); - br.close(); - return sb.toString(); - - } catch (IOException ex) { - Log.e(TAG, "doInBackground: ", ex); - } - return sb.toString(); - } - - @Override - protected void onPostExecute(String result) { - //show the skeleton to the user in a dialog box - final Context ctx = this.context; - final LinearLayout ll = new LinearLayout(ctx); - ScrollView sv = new ScrollView(ctx); - ll.setOrientation(LinearLayout.VERTICAL); - sv.addView(ll); - - try { - final JSONObject json = new JSONObject(result); //main server response json - JSONObject mjson = json.getJSONObject("run"); //main framework response json - String name = mjson.getString("name"); //a name that can be configured or edited - // for the new run to be created - ll.addView(createTextView(ctx, name)); - final JSONArray attr_array = mjson.getJSONArray("inputs_attributes"); - for (int i = 0; i < attr_array.length(); i++) { - JSONObject obj = attr_array.getJSONObject(i); - ll.addView(createTextView(ctx, obj.getString("name"))); - ll.addView(createEditText(ctx, i)); - } - - alertDialogBuilder = new AlertDialog.Builder(ctx); - alertDialogBuilder.setView(sv); - // alertDialogBuilder.setMessage(result); - alertDialogBuilder.setIcon(ctx.getResources().getDrawable(R.mipmap.ic_launcher)); - alertDialogBuilder.setTitle("New Workflow Run"); - alertDialogBuilder.setPositiveButton("Execute", new DialogInterface - .OnClickListener() { - @Override - public void onClick(DialogInterface dialogInterface, int i) { - int n = attr_array.length(); - for (int j = 0; j < n; j++) { - try { - EditText inputText = (EditText) ll.findViewById(j); - String value = inputText.getText().toString(); //get input entry - // entered by the user - JSONObject jojb = attr_array.getJSONObject(j); //get the input - // attributes provided by the skeleton - jojb.put("value", value); //replace value field in object with - // the entry provided by the user - attr_array.put(j, jojb); //replace the input entry with the new - // name/input json object - - } catch (JSONException e) { - Log.e(TAG, "onClick: ", e); - } - - } - try { - json.put("inputs_attributes", attr_array); - Log.i("RUN FRAMEWORK", json.toString(2)); - //start a run task to execute the run. - new RunTask(ctx).execute(json.toString()); - } catch (JSONException e) { - Log.e(TAG, "onClick: ", e); - } catch (Exception ex) { - Log.e(TAG, "onClick: ", ex); - } - - } - }); - alertDialogBuilder.setNegativeButton("Cancel", new DialogInterface - .OnClickListener() { - - @Override - public void onClick(DialogInterface dialogInterface, int i) { - dialogInterface.dismiss(); - } - }); - - runDialog = alertDialogBuilder.create(); - - } catch (JSONException e) { - Log.e(TAG, "onPostExecute: ", e); - } - progressDialog.dismiss(); - - runDialog.show(); - } - } - - /** - * Send request for the execution of a run on a Taverna server through the Taverna player using - * the Player API - * This process passes through several steps,\n - * 1- Downloading and caching a local version of the workflow whose run we need \n - * 2- uploading the workflow through the portal to register it so a run can be generated from - * it. The request requires some authentication - * 3- Retrieving the results and extracting data required to create a run (the workflow_id) as - * provided by the results - * 4- Posting a run request to the player so that a new run can be created and started - * 5- retrieving a run framework so that users can know what types of input is expected for a - * successful run - * 6- retrieving and displaying run results - */ - private class WorkflowProcessTask extends AsyncTask<String, Void, String> { - - private Context context; - - private WorkflowProcessTask(Context context) { - this.context = context; - } - - @Override - protected void onPreExecute() { - progressDialog.setMessage("Uploading Workflow ... "); - progressDialog.show(); - } - - @Override - protected String doInBackground(String... params) { - StringBuffer sb = new StringBuffer(53); - try { - //prepare connection requests - URL workflowurl = new URL(params[0]); //the resource xml file representing the - // workflow to be uploaded to the player - String playerurl = new TavernaPlayerAPI(this.context).mPlayerBaseUrl + - "workflows.json"; - TavernaPlayerAPI tavernaPlayerAPI = new TavernaPlayerAPI(); - - URL posturl = new URL(playerurl); - HttpURLConnection connection = (HttpURLConnection) posturl.openConnection(); - HttpURLConnection wconn = (HttpURLConnection) workflowurl.openConnection(); - wconn.setRequestMethod("GET"); - wconn.setDoOutput(true); - wconn.setRequestProperty("Accept", "application/xml"); - wconn.connect(); - - String user = tavernaPlayerAPI.getPlayerUserName(this.context) + ":" + - tavernaPlayerAPI.getPlayerUserPassword(this.context); - String basicAuth = "Basic " + Base64.encodeToString(user.getBytes(Charset.forName - ("UTF-8")), Base64 - .DEFAULT); - //read the file from remote resource and encode the stream with a base64 algorithm - BufferedReader bufferedReader = new BufferedReader(new InputStreamReader(wconn - .getInputStream(), "UTF-8")); - String str = ""; - while ((str = bufferedReader.readLine()) != null) { - sb.append(str); //in this string builder we have read the workflow( as - // .t2flow or .xml) workflow from remote resource. Now we need to post that to - // the player. - } - bufferedReader.close(); - wconn.disconnect(); - - String data = "{\"document\":\"data:application/octet-stream;base64," + - Base64.encodeToString(sb.toString().getBytes("UTF-8"), Base64.URL_SAFE | - Base64.NO_WRAP).replace('-', '+') + "\"}"; - String post = "{\"workflow\":" + data + "}"; - //clear sb so that we can use it again to fetch results from this post request - sb.delete(0, sb.length() - 1); - Log.d(TAG, "BODY=>" + post); - connection.setRequestMethod("POST"); - connection.setRequestProperty("Authorization", basicAuth); - connection.setRequestProperty("Accept", "*/*"); - connection.setRequestProperty("Content-Type", "application/json"); - connection.setRequestProperty("Content-Encoding", "UTF-8"); - connection.setUseCaches(false); - connection.setDoOutput(true); - connection.connect(); //send request - - DataOutputStream dos = new DataOutputStream(connection.getOutputStream()); - - dos.writeBytes(post); //write post data which is a formatted json data - // representing body of workflow - - dos.flush(); - dos.close(); - - InputStream dis = connection.getInputStream(); - BufferedReader br = new BufferedReader(new InputStreamReader(dis, "UTF-8")); - while ((str = br.readLine()) != null) { - sb.append(str); - } - connection.disconnect(); - } catch (IOException e) { - Log.e(TAG, "doInBackground: ", e); - sb.append("Error reading remote workflow. Please try again later"); - } - - return sb.toString(); - } - - /** - * Receives a result from the player as a json describing the workflow that has just been - * uploaded along with key components that - * can be used to generate a run from thw workflow. A run is started that would fetch and - * build a sample UI for a workflow run to be executed - * - * @param s the json result that describes the uploaded workflow - */ - @Override - protected void onPostExecute(String s) { - progressDialog.dismiss(); - s = s.substring(1, s.length()); - try { - JSONObject workflowJson = new JSONObject(s); - new WorkflowRunTask(getActivity()).execute(workflowJson.getString("id")); - - } catch (JSONException e) { - Log.e(TAG, "onPostExecute: ", e); - } - - } - } - - /** - * Upload workflow from myexperiment to DropBox - */ - private class WorkflowDriveUpload extends AsyncTask<String, Void, String> { - @Override - protected void onPreExecute() { - Toast.makeText(getActivity(), "Saving workflow to dropBox", Toast.LENGTH_LONG).show(); - } - - @Override - protected String doInBackground(String... files) { - // File file = new File(files[0]); - HttpURLConnection mconn; - // FileInputStream inputStream = null; - DropboxAPI.Entry response = null; - DropboxAPI.Entry metaDataEntry = null; - try { - mconn = (HttpURLConnection) new URL(files[0]).openConnection(); - mconn.setRequestMethod("GET"); - mconn.connect(); - - // inputStream = new FileInputStream(file); - - response = mDBApi.putFile("/" + Uri.parse(files[0]).getLastPathSegment(), mconn - .getInputStream(), - mconn.getContentLength(), null, new ProgressListener() { - @Override - public void onProgress(long l, long l2) { - if (l == l2) { - Toast.makeText(getActivity(), "Upload complete", Toast - .LENGTH_LONG).show(); - } - } - }); - - Log.i("DbExampleLog", "The uploaded file's rev is: " + response.rev); - // metaDataEntry = mDBApi.metadata("/"+Uri.parse(files[0]).getLastPathSegment(), - // 1, null, false, null); - } catch (FileNotFoundException e) { - Log.e(TAG, "doInBackground: ", e); - } catch (DropboxException e) { - Log.e(TAG, "doInBackground: ", e); - } catch (MalformedURLException e) { - Log.e(TAG, "doInBackground: ", e); - } catch (IOException e) { - Log.e(TAG, "doInBackground: ", e); - } - - return response.rev; - } - - @Override - protected void onPostExecute(String s) { - if (null != s) { - Toast.makeText(getActivity(), "File Saved to dropbox. Reference: " + s, Toast - .LENGTH_LONG).show(); - mDropupload = true; - } else { - Toast.makeText(getActivity(), "Failed to save to dropbox " + s, Toast - .LENGTH_LONG).show(); - } - } - } - -}
http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Runs.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Runs.java b/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Runs.java deleted file mode 100644 index 56df291..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Runs.java +++ /dev/null @@ -1,113 +0,0 @@ -/* -* Apache Taverna Mobile -* Copyright 2015 The Apache Software Foundation - -* This product includes software developed at -* The Apache Software Foundation (http://www.apache.org/). - -* Licensed to the Apache Software Foundation (ASF) under one -* or more contributor license agreements. See the NOTICE file -* distributed with this work for additional information -* regarding copyright ownership. The ASF licenses this file -* to you under the Apache License, Version 2.0 (the -* "License"); you may not use this file except in compliance -* with the License. You may obtain a copy of the License at -* -* http://www.apache.org/licenses/LICENSE-2.0 -* -* Unless required by applicable law or agreed to in writing, -* software distributed under the License is distributed on an -* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY -* KIND, either express or implied. See the License for the -* specific language governing permissions and limitations -* under the License. -*/ - -package org.apache.taverna.mobile.tavernamobile; - -/** - * Created by Larry Akah on 6/13/15. - * Workflow runs for a given workflow - */ -public class Runs { - private long run_id; - private long run_workflow_id; - private String run_name; - private String run_started_date; - private String run_ended_date; - private String state; - private String run_author; - - public Runs(String run_name, String run_started_date, String run_ended_date, String state) { - this.run_name = run_name; - this.run_started_date = run_started_date; - this.run_ended_date = run_ended_date; - this.state = state; - } - - ; - - public long getRunId() { - return run_id; - } - - public void setrunId(long run_id) { - this.run_id = run_id; - } - - public long getRunWorkflowId() { - return run_workflow_id; - } - - public void setRunWorkflowId(long run_workflow_id) { - this.run_workflow_id = run_workflow_id; - } - - public RunState getState() { - if (state.equalsIgnoreCase("finished")) { - return RunState.FINISHED; - } else if (state.equalsIgnoreCase("failed")) { - return RunState.FAILED; - } else { - return RunState.RUNNING; - } - } - - public void setState(String state) { - this.state = state; - } - - public String getRunName() { - return run_name; - } - - public void setRunName(String run_name) { - this.run_name = run_name; - } - - public String getRunStartedDate() { - return run_started_date; - } - - public void setRunStartedDate(String run_started_date) { - this.run_started_date = run_started_date; - } - - public String getRunAuthor() { - return run_author; - } - - public void setRunAuthor(String run_author) { - this.run_author = run_author; - } - - public String getRunEndedDate() { - return run_ended_date; - } - - public void setRunEndedDate(String run_ended_date) { - this.run_ended_date = run_ended_date; - } - - public static enum RunState { FAILED, FINISHED, RUNNING } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/tavernamobile/TavernaPlayerAPI.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/TavernaPlayerAPI.java b/app/src/main/java/org/apache/taverna/mobile/tavernamobile/TavernaPlayerAPI.java deleted file mode 100644 index 6e6bcc1..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/TavernaPlayerAPI.java +++ /dev/null @@ -1,107 +0,0 @@ -package org.apache.taverna.mobile.tavernamobile; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import android.content.Context; -import android.preference.PreferenceManager; - -import java.net.PasswordAuthentication; - -/** - * Created by Larry Akah on 6/13/15. - */ -public class TavernaPlayerAPI { - - public static String mPlayerBaseUrl = "http://heater.cs.man.ac.uk:3000/";; - public static String mServerBaseUrl = "http://heater.cs.man.ac.uk:8090/taverna-2.5.4/";; - public static String mPlayerWorkFlowUrl = mPlayerBaseUrl + "workflows/"; - public static String mPlayerRunUrl = mPlayerBaseUrl + "runs/"; - public static String mPlayerRunFrameworkUrl = mPlayerRunUrl + "new?workflow_id="; - //returns a json 'framework' used for creating runs for the given workflow - - public TavernaPlayerAPI(Context context) { - String server = PreferenceManager.getDefaultSharedPreferences(context).getString - ("pref_server_url", "/"); - String player = PreferenceManager.getDefaultSharedPreferences(context).getString - ("pref_player_url", "/"); - String user = PreferenceManager.getDefaultSharedPreferences(context).getString - ("pref_player_url", "/"); - String password = PreferenceManager.getDefaultSharedPreferences(context).getString - ("pref_player_url", "/"); - mPlayerBaseUrl = player; - mServerBaseUrl = server; - mPlayerWorkFlowUrl = mPlayerBaseUrl + "workflows/"; - mPlayerRunUrl = mPlayerBaseUrl + "runs/"; - mPlayerRunFrameworkUrl = mPlayerRunUrl + "new?workflow_id="; - } - - public TavernaPlayerAPI() { - - } - - public static String getplayerBaseUrl() { - return mPlayerBaseUrl; - } - - public static String getserverBaseUrl() { - return mServerBaseUrl; - } - - public static String getplayerWorkflowUrl() { - return mPlayerWorkFlowUrl; - } - - public static String getplayerRunUrl(Context ctx) { - return mPlayerRunUrl; - } - - public static String getplayerRunFrameworkUrl(Context ctx) { - return mPlayerRunFrameworkUrl; - } - - public String getPlayerUserName(Context c) { - return PreferenceManager.getDefaultSharedPreferences(c).getString("pref_user", "default"); - } - - public String getPlayerUserPassword(Context c) { - return PreferenceManager.getDefaultSharedPreferences(c).getString("pref_password", - "default"); - } - - public static class Authenticator extends java.net.Authenticator { - private String username, password; - - public Authenticator(String username, String password) { - super(); - this.username = username; - this.password = password; - } - - @Override - protected PasswordAuthentication getPasswordAuthentication() { - return new PasswordAuthentication(this.username, this.password.toCharArray()); - } - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/tavernamobile/User.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/User.java b/app/src/main/java/org/apache/taverna/mobile/tavernamobile/User.java deleted file mode 100644 index 4c30739..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/User.java +++ /dev/null @@ -1,171 +0,0 @@ -package org.apache.taverna.mobile.tavernamobile; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import org.apache.taverna.mobile.adapters.WorkflowAdapter; -import org.simpleframework.xml.Element; - -import android.graphics.Bitmap; - -import java.util.List; - -/** - * Created by root on 6/18/15. - */ -public class User { - - private static final long serialVersionUID = 3467195671046297377L; - @Element(required = false) - protected String id; - @Element(name = "created-at", required = false) - protected String created_at; - @Element(required = false) - protected String name; - @Element(required = false) - protected String description; - @Element(required = false) - protected String email; - @Element(required = false) - protected Bitmap avatar; - @Element(required = false) - protected String city; - @Element(required = false) - protected String country; - @Element(required = false) - protected String website; - protected String details_uri; - protected List<Workflow> user_workflows; //a list of workflows owned by this user - private String avatar_url; - private String row_id; //identifies the row to which this user is being loaded in, in the - // workflow listview - private WorkflowAdapter.ViewHolder userViewHolder; - - public User(String rid, WorkflowAdapter.ViewHolder vh) { - super(); - row_id = rid; - this.userViewHolder = vh; - } - - public WorkflowAdapter.ViewHolder getUserViewHolder() { - return userViewHolder; - } - - public void setUserViewHolder(WorkflowAdapter.ViewHolder userViewHolder) { - this.userViewHolder = userViewHolder; - } - - public String getRowId() { - return this.row_id; - } - - public void setId(String id) { - this.id = id; - } - - public String getCreatedAt() { - return created_at; - } - - public void setCreatedAt(String created_at) { - this.created_at = created_at; - } - - public String getDetailsUri() { - return this.details_uri; - } - - public void setDetailsUri(String details_uri) { - this.details_uri = details_uri; - } - - public String getAvatarUrl() { - return this.avatar_url; - } - - public void setAvatarUrl(String avatar_url) { - this.avatar_url = avatar_url; - } - - public String getName() { - return name; - } - - public void setName(String name) { - this.name = name; - } - - public String getDescription() { - return description; - } - - public void setDescription(String description) { - this.description = description; - } - - public String getEmail() { - return email; - } - - public void setEmail(String email) { - this.email = email; - } - - public Bitmap getAvatar() { - return avatar; - } - - public void setAvatar(Bitmap avatar) { - this.avatar = avatar; - } - - public String getCity() { - return city; - } - - public void setCity(String city) { - this.city = city; - } - - public String getCountry() { - return country; - } - - public void setCountry(String country) { - this.country = country; - } - - public String getWebsite() { - return website; - } - - public void setWebsite(String website) { - this.website = website; - } - - @Override - public String toString() { - return "This is the user object"; - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Workflow.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Workflow.java b/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Workflow.java deleted file mode 100644 index be92a9c..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/Workflow.java +++ /dev/null @@ -1,361 +0,0 @@ -package org.apache.taverna.mobile.tavernamobile; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import org.apache.taverna.mobile.R; - -import android.content.Context; -import android.graphics.Bitmap; -import android.graphics.BitmapFactory; - -import java.util.ArrayList; -import java.util.List; - -/** - * Created by root on 6/8/15. - */ -public class Workflow { - private Context context; - private User uploader; - private String workflow_author; - private String workflow_title; - private String workflow_description, about, policy; - private String workflow_datecreated, workflow_datemodified; - private Bitmap workflow_author_bitmap; - private WorkflowComponent workflowComponent; - private String workflow_remote_url; //provides a link to download the workflow. Equivalent to - // content-uri in the xml form - private String workflow_web_url; //a string containing the workflow resource that can be - // loaded in browser - private String workflow_details_url; //used to refer to the details of the workflow - private List<Runs> workflow_runs; - private int workflow_input; - private long id; - private String workflow_uploader; //indicate the user who uploaded the workflow - private String workflow_Type; //describes whether it is a type 1 or 2 workflow - private String workflow_preview; //a url to a preview image of the workflow - private String workflow_thumb_big; //a url to a full scale image of the workflow. I Will - // usually an SVG because the it is available for most of the workflows - private String workflow_licence_type; //describes a type of licensing for the workflow - private String workflow_content_type; //specifies a content type for the workflow; - private List<String> workflow_tags; //provides a list of string tags that could be used to - // index the workflow for searches - private String workflow_versions; //a list of version for the workflow uploaded over time - private List<String> workflow_credits; //key contributors to the workflow - - public Workflow() { - } - - ; - - public Workflow(Context context) { - this.context = context; - this.workflow_runs = new ArrayList<Runs>(); - } - - public Workflow(String author, String description, long id, String url) { - this.workflow_author = author; - this.workflow_author_bitmap = null; //BitmapFactory.decodeResource(getResources(), R - // .drawable.ic_userprofile); - this.workflow_description = description; - this.workflow_input = 1; - this.id = id; - this.workflow_remote_url = url; - this.workflow_runs = new ArrayList<Runs>(); - } - - public Workflow(Context ctx, String title, String author, String description, long id, String - url) { - this.context = ctx; - this.workflow_author = author; - this.workflow_author_bitmap = BitmapFactory.decodeResource(this.context.getResources(), R - .drawable.ic_userprofile); - this.workflow_description = description; - this.workflow_title = title; - this.workflow_input = 1; - this.id = id; - this.workflow_remote_url = url; - this.workflow_runs = new ArrayList<Runs>(); - } - - public long getId() { - return this.id; - } - - public void setId(long id) { - this.id = id; - } - - public String getWorkflowDatecreated() { - return this.workflow_datecreated; - } - - public void setWorkflowDatecreated(String workflow_datecreated) { - this.workflow_datecreated = workflow_datecreated; - } - - public String getWorkflowRemoteUrl() { - return this.workflow_remote_url; - } - - public void setWorkflowRemoteUrl(String workflow_remote_url) { - this.workflow_remote_url = workflow_remote_url; - } - - public String getWorkflowDetailsUrl() { - return this.workflow_details_url; - } - - public void setWorkflowDetailsUrl(String workflow_details_url) { - this.workflow_details_url = workflow_details_url; - } - - public User getUploader() { - return this.uploader; - } - - public void setUploader(User uploader) { - this.uploader = uploader; - } - - public String getPolicy() { - return this.policy; - } - - public void setPolicy(String policy) { - this.policy = policy; - } - - public String getAbout() { - return this.about; - } - - public void setAbout(String about) { - this.about = about; - } - - public String getWorkflowDatemodified() { - return this.workflow_datemodified; - } - - public void setWorkflowDatemodified(String workflow_datemodified) { - this.workflow_datemodified = workflow_datemodified; - } - - public List<Runs> getWorkflowRuns() { - return this.workflow_runs; - } - - public void setWorkflowRuns(List<Runs> workflow_runs) { - this.workflow_runs = workflow_runs; - } - - public void addWorkflowRun(Runs runs) { //adds a run to this workflow - this.workflow_runs.add(runs); - } - - public int getWorkflowInput() { - return this.workflow_input; - } - - public void setWorkflowInput(int workflow_input) { - this.workflow_input = workflow_input; - } - - public WorkflowInputType getInputType() { - return WorkflowInputType.TYPE_INT; - } - - public String getWorkflowAuthor() { - return this.workflow_author; - } - - public void setWorkflowAuthor(String workflow_author) { - this.workflow_author = workflow_author; - } - - public String getWorkflowDescription() { - return this.workflow_description; - } - - public void setWorkflowDescription(String workflow_description) { - this.workflow_description = workflow_description; - } - - public String getWorkflowTitle() { - return this.workflow_title; - } - - public void setWorkflowTitle(String workflow_title) { - this.workflow_title = workflow_title; - } - - public Bitmap getWorkflowAuthorBitmap() { - return this.workflow_author_bitmap; - } - - public void setWorkflowAuthorBitmap(Bitmap workflow_author_bitmap) { - this.workflow_author_bitmap = workflow_author_bitmap; - } - - public WorkflowComponent getWorkflowComponent() { - return this.workflowComponent; - } - - public void setWorkflowComponent(WorkflowComponent workflowComponent) { - this.workflowComponent = workflowComponent; - } - - public String getWorkflowWebUrl() { - return workflow_web_url; - } - - public void setWorkflowWebUrl(String workflow_web_url) { - this.workflow_web_url = workflow_web_url; - } - - public String getWorkflowUploader() { - return workflow_uploader; - } - - public void setWorkflowUploader(String workflow_uploader) { - this.workflow_uploader = workflow_uploader; - } - - public String getWorkflowType() { - return workflow_Type; - } - - public void setWorkflowType(String workflow_Type) { - this.workflow_Type = workflow_Type; - } - - public String getWorkflowPreview() { - return workflow_preview; - } - - public void setWorkflowPreview(String workflow_preview) { - this.workflow_preview = workflow_preview; - } - - public String getWorkflowThumbBig() { - return workflow_thumb_big; - } - - public void setWorkflowThumbBig(String workflow_thumb_big) { - this.workflow_thumb_big = workflow_thumb_big; - } - - public String getWorkflowLicenceType() { - return workflow_licence_type; - } - - public void setWorkflowLicenceType(String workflow_licence_type) { - this.workflow_licence_type = workflow_licence_type; - } - - public String getWorkflowContentType() { - return workflow_content_type; - } - - public void setWorkflowContentType(String workflow_content_type) { - this.workflow_content_type = workflow_content_type; - } - - public List<String> getWorkflowTags() { - return workflow_tags; - } - - public void setWorkflowTags(List<String> workflow_tags) { - this.workflow_tags = workflow_tags; - } - - public String getWorkflowVersions() { - return workflow_versions; - } - - public void setWorkflowVersions(String workflow_versions) { - this.workflow_versions = workflow_versions; - } - - public List<String> getWorkflowCredits() { - return workflow_credits; - } - - public void setWorkflowCredits(List<String> workflow_credits) { - this.workflow_credits = workflow_credits; - } - - @Override - public String toString() { - return this.workflow_title; - } - - public static enum WorkflowInputType { TYPE_INT, TYPE_STRING, TYPE_OBJECT } -} -/* Use the sample code if it becomes necessary to pass this objects amongst activities -/ simple class that just has one member property as an example -public class Workflow implements Parcelable { - private int mData; - - */ -/* everything below here is for implementing Parcelable *//* - - - // 99.9% of the time you can just ignore this - public int describeContents() { - return 0; - } - - // write your object's data to the passed-in Parcel - public void writeToParcel(Parcel out, int flags) { - out.writeInt(mData); - } - -// this is used to regenerate your object. All Parcelables must have a CREATOR that implements -these two methods -public static final Parcelable.Creator<Workflow> CREATOR = new Parcelable.Creator<Workflow>() { - public Workflow createFromParcel(Parcel in) { - return new Workflow(in); - } - - public Workflow[] newArray(int size) { - return new Workflow[size]; - } -}; - - // example constructor that takes a Parcel and gives you an object populated with it's values - private Workflow(Parcel in) { - mData = in.readInt(); - } -} - -//application in intents. Sending object to another activity - Intent it = new Intent(); - it.putExtra("parsedWorkflow", myWorkflow); -//retrieve object - Workflow mWorkflow = (Workflow) getIntent().getParcelableExtra("parsedWorkflow"); - - */ http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/tavernamobile/WorkflowComponent.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/WorkflowComponent.java b/app/src/main/java/org/apache/taverna/mobile/tavernamobile/WorkflowComponent.java deleted file mode 100644 index 514824a..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/tavernamobile/WorkflowComponent.java +++ /dev/null @@ -1,36 +0,0 @@ -package org.apache.taverna.mobile.tavernamobile; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -/** - * Created by Larry Akah on 6/8/15. - * the component elements that make up a workflow's dataflow (e.g. Taverna has sources, sinks, - * processors, links and coordinations) - */ -public class WorkflowComponent { - - public WorkflowComponent() { - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/utils/AvatarLoader.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/utils/AvatarLoader.java b/app/src/main/java/org/apache/taverna/mobile/utils/AvatarLoader.java deleted file mode 100644 index 984f41b..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/utils/AvatarLoader.java +++ /dev/null @@ -1,84 +0,0 @@ -package org.apache.taverna.mobile.utils; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import com.thebuzzmedia.sjxp.rule.IRule; - -import org.apache.taverna.mobile.adapters.WorkflowAdapter; -import org.apache.taverna.mobile.tavernamobile.User; -import org.apache.taverna.mobile.utils.xmlparsers.AvatarXMLParser; -import org.apache.taverna.mobile.utils.xmlparsers.MyExperimentXmlParserRules; - -import android.os.AsyncTask; -import android.util.Log; - -import java.io.IOException; -import java.io.InputStream; -import java.net.HttpURLConnection; -import java.net.MalformedURLException; -import java.net.URL; - -/** - * initiates a process to fetch and parse uploader information so as to retrieve the id, name and - * avatar link - * Created by Larry AKah on 6/29/15. - */ -public class AvatarLoader extends AsyncTask<String, Void, Void> { - private static final String TAG = "AvatarLoader"; - WorkflowAdapter.ViewHolder vh; - - public AvatarLoader(WorkflowAdapter.ViewHolder userViewHolder) { - this.vh = userViewHolder; - } - - @Override - protected Void doInBackground(String... strings) { - URL url = null; - HttpURLConnection connection = null; - try { - - url = new URL(strings[0]); - connection = (HttpURLConnection) url.openConnection(); - connection.setDoInput(true); - connection.connect(); - InputStream input = connection.getInputStream(); - IRule avatarRule = new MyExperimentXmlParserRules.AuthorRule(IRule.Type.ATTRIBUTE, - "/user/avatar", "resource", "uri", "id"); - IRule avatarName = new MyExperimentXmlParserRules.AuthorRule(IRule.Type.CHARACTER, - "/user/name"); - AvatarXMLParser avatarXMLParser = new AvatarXMLParser(new IRule[]{avatarRule, - avatarName}); - - avatarXMLParser.parse(input, new User(strings[1], this.vh)); - - } catch (MalformedURLException e) { - Log.e(TAG, "doInBackground: ", e); - } catch (IOException e) { - Log.e(TAG, "doInBackground: ", e); - } - - return null; - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/utils/DBUtility.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/utils/DBUtility.java b/app/src/main/java/org/apache/taverna/mobile/utils/DBUtility.java deleted file mode 100644 index df7b990..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/utils/DBUtility.java +++ /dev/null @@ -1,65 +0,0 @@ -package org.apache.taverna.mobile.utils; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import org.json.JSONArray; -import org.json.JSONException; - -import java.util.ArrayList; - -/** - * This class contains all utility functions used by our database for basic functionality not - * directly related to the core - * functionality of it but that aids a core functionality to carryout its function efficiently. - * This class is designed to be a singleton class - * - * @author Larry Akah - */ -public class DBUtility { - - /** - * Returns a new JSONArray of new key values to be stored ommitting the identified entry to be - * removed - */ - public static JSONArray removeKey(JSONArray keys, String removeid) throws JSONException { - ArrayList<String> mkeys = new ArrayList<String>(); - if (keys != null) { - for (int i = 0; i < keys.length(); i++) { - mkeys.add(keys.getString(i)); - } - mkeys.remove(removeid); - JSONArray nkeyArray = new JSONArray(); - for (String newkey : mkeys) { - nkeyArray.put(newkey); - } - return nkeyArray; //returns the new keys to save under the db; - - } else { - return keys; //returns a null value indicating nothin to remove due to no keys available - } - - } - -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/utils/DetailsLoader.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/utils/DetailsLoader.java b/app/src/main/java/org/apache/taverna/mobile/utils/DetailsLoader.java deleted file mode 100644 index cec8748..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/utils/DetailsLoader.java +++ /dev/null @@ -1,280 +0,0 @@ -package org.apache.taverna.mobile.utils; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import com.thebuzzmedia.sjxp.rule.IRule; - -import org.apache.taverna.mobile.tavernamobile.Runs; -import org.apache.taverna.mobile.tavernamobile.TavernaPlayerAPI; -import org.apache.taverna.mobile.tavernamobile.Workflow; -import org.apache.taverna.mobile.utils.xmlparsers.MyExperimentXmlParserRules; -import org.apache.taverna.mobile.utils.xmlparsers.WorkflowDetailParser; -import org.json.JSONArray; -import org.json.JSONException; -import org.json.JSONObject; - -import android.content.AsyncTaskLoader; -import android.content.Context; -import android.util.Base64; -import android.util.Log; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.net.Authenticator; -import java.net.HttpURLConnection; -import java.net.MalformedURLException; -import java.net.URL; -import java.nio.charset.Charset; - -/** - * Loads workflow details from the myexperiment API and presents them on the UI .The class is - * generic and can be used to load the - * different details sections of the app. - * Created by Larry Akah on 6/14/15. - */ -public class DetailsLoader extends AsyncTaskLoader<Workflow> { - - private static final String TAG = "DetailsLoader"; - private LoadType lt; - private String uri; - private Workflow workflow; - private Context context; - - public DetailsLoader(Context context, LoadType LoadType, String dataParam) { - super(context); - this.context = context; - this.lt = LoadType; - uri = dataParam; - this.workflow = new Workflow(); - } - - @Override - public Workflow loadInBackground() { - HttpURLConnection connection = null; - InputStream dis = null; - //start a network request to fetch user's workflow details - try { - Log.i("LOADER STARTED", "loading data"); - //for password protected urls use the user's credentials - Authenticator.setDefault(new TavernaPlayerAPI.Authenticator("taverna", "taverna")); - TavernaPlayerAPI tavernaPlayerAPI = new TavernaPlayerAPI(); - URL workflowurl; - - switch (this.lt) { - case TYPE_WORKFLOW_DETAIL: - workflowurl = new URL(uri); - connection = (HttpURLConnection) workflowurl.openConnection(); - connection.setRequestProperty("Accept", "application/json"); - connection.setRequestMethod("GET"); - connection.connect(); //send request - - Log.i("Workflow Response Code", "" + connection.getResponseCode()); - Log.i("Workflow Response msg", "" + connection.getResponseMessage()); - dis = connection.getInputStream(); - break; - case TYPE_RUN_HISTORY: - workflowurl = new URL(new TavernaPlayerAPI(this.context).mPlayerRunUrl); - connection = (HttpURLConnection) workflowurl.openConnection(); - String userpass = tavernaPlayerAPI.getPlayerUserName(this.context) + ":" + - tavernaPlayerAPI.getPlayerUserPassword(this.context); - String basicAuth = "Basic " + Base64.encodeToString(userpass.getBytes(Charset - .forName("UTF-8")), - Base64.DEFAULT); - - connection.setRequestProperty("Authorization", basicAuth); - connection.setRequestProperty("Accept", "application/json"); - connection.setRequestMethod("GET"); - connection.connect(); //send request - Log.i("RESPONSE CODE", "" + connection.getResponseCode()); - Log.i("RESPONSE Messsage. Run", "" + connection.getResponseMessage()); - dis = connection.getInputStream(); - break; - case TYPE_POLICY: - workflowurl = new URL(new TavernaPlayerAPI(this.context).mServerBaseUrl); - break; - default: - workflowurl = new URL(new TavernaPlayerAPI(this.context).mPlayerWorkFlowUrl); - break; - } - - switch (this.lt) { - case TYPE_WORKFLOW_DETAIL: { - //make rules and apply the parser - IRule workfl = new MyExperimentXmlParserRules.WorkflowDetailRule(IRule.Type - .ATTRIBUTE, - "/workflow", "uri", "resource", "id", "version"); - IRule title = new MyExperimentXmlParserRules.TitleRule(IRule.Type.CHARACTER, - "/workflow/title"); - IRule description = new MyExperimentXmlParserRules.DescriptionRule(IRule.Type - .CHARACTER, "/workflow/description"); - IRule type = new MyExperimentXmlParserRules.TypeRule(IRule.Type.CHARACTER, - "/workflow/type"); - IRule attrType = new MyExperimentXmlParserRules.TypeRule(IRule.Type - .ATTRIBUTE, "/workflow/type", "resource", "uri", "id"); - IRule uploader = new MyExperimentXmlParserRules.UploaderRule(IRule.Type - .CHARACTER, "/workflow/uploader"); - IRule attrUploader = new MyExperimentXmlParserRules.UploaderRule(IRule.Type - .ATTRIBUTE, "/workflow/uploader", "resource", "uri", "id"); - IRule date = new MyExperimentXmlParserRules.DateRule(IRule.Type.CHARACTER, - "/workflow/created-at"); - IRule preview = new MyExperimentXmlParserRules.PreviewRule(IRule.Type - .CHARACTER, "/workflow/preview"); - IRule licetype = new MyExperimentXmlParserRules.LicenceTypeRule(IRule.Type - .CHARACTER, "/workflow/licence-type"); - IRule attrlicetype = new MyExperimentXmlParserRules.LicenceTypeRule(IRule - .Type.ATTRIBUTE, "/workflow/licence-type", "resource", "uri", "id"); - IRule contenturi = new MyExperimentXmlParserRules.ContentUriRule(IRule.Type - .CHARACTER, "/workflow/content-uri"); - IRule contentType = new MyExperimentXmlParserRules.ContentTypeRule(IRule.Type - .CHARACTER, "/workflow/content-type"); - IRule tags = new MyExperimentXmlParserRules.TagsRule(IRule.Type.CHARACTER, - "/workflow/tags/tag"); - IRule attrTags = new MyExperimentXmlParserRules.TagsRule(IRule.Type - .ATTRIBUTE, "/workflow/tags/tag", "resource", "uri", "id"); - - WorkflowDetailParser parser = new WorkflowDetailParser(new IRule[]{workfl, - title, description, type, - attrlicetype, attrType, uploader, attrUploader, date, preview, - licetype, contenturi, contentType, tags, attrTags}); - // Log.e(TAG, sb.toString()); - parser.parse(dis, this.workflow); - } - dis.close(); - //br.close(); - return workflow; - case TYPE_RUN_HISTORY: { - Log.e(TAG, "Downloading run history"); - BufferedReader br = new BufferedReader(new InputStreamReader(dis, "UTF-8")); - StringBuffer sb = new StringBuffer(); - String jsonData = ""; - while ((jsonData = br.readLine()) != null) { - sb.append(jsonData); - } - workflow = new Workflow(this.context); - JSONArray jsonArray = new JSONArray(sb.toString()); - Log.i("RUN JSON ", jsonArray.toString(2)); - for (int j = 0; j < jsonArray.length(); j++) { - JSONObject jsonObject = jsonArray.getJSONObject(j); - long id = jsonObject.getLong("id"); - long workflow_id = jsonObject.getLong("workflow_id"); - String name = jsonObject.getString("name"); - String started = jsonObject.getString("start_time"); - String ended = jsonObject.getString("finish_time"); - String state = jsonObject.getString("state"); - JSONObject userobj = jsonObject.getJSONObject("user"); - String username = userobj.getString("name"); - StringBuffer nm = new StringBuffer(), ur = new StringBuffer(); - for (String n : name.toLowerCase().split(" ")) { - nm.append(n); - } - for (String p : uri.toLowerCase().split(" ")) { - ur.append(p); - } - if (nm.toString().equals(ur.toString())) { - Runs mrun = new Runs(name, started, ended, state); - mrun.setrunId(id); - mrun.setRunWorkflowId(workflow_id); - mrun.setRunAuthor(username); - - workflow.addWorkflowRun(mrun); - } - } - } - return workflow; - case TYPE_POLICY: { - - } - return workflow; - default: - BufferedReader br = new BufferedReader(new InputStreamReader(dis, "UTF-8")); - StringBuffer sb = new StringBuffer(); - String jsonData = ""; - while ((jsonData = br.readLine()) != null) { - sb.append(jsonData); - } - dis.close(); - br.close(); - return workflow; - } - - } catch (MalformedURLException e) { - Log.e(TAG, "loadInBackground: ", e); - } catch (IOException e) { - Log.e(TAG, "loadInBackground: ", e); - } catch (JSONException e) { - Log.e(TAG, "loadInBackground: ", e); - } - return workflow; - } - - @Override - public boolean isStarted() { - return super.isStarted(); - } - - @Override - protected void onStartLoading() { - /* if(workflow != null){ - deliverResult(workflow); - }else{ - forceLoad(); - }*/ - forceLoad(); - Log.i("Loading State", "loading started"); - } - - @Override - protected void onStopLoading() { - Log.i("Loading detailComponent", "loading stopped"); - } - - @Override - public void deliverResult(Workflow data) { - if (isStarted()) { - super.deliverResult(data); - } - } - - public static enum LoadType { - TYPE_WORKFLOW_DETAIL, TYPE_RUN_HISTORY, TYPE_POLICY, - TYPE_ABOUT_WORKFLOW - } -} -/** - * JSONObject js = new JSONObject(sb.toString()); - * Log.i("JSON ", js.toString(2)); - * String created_at = js.getString("created_at"); - * String updated_at = js.getString("updated_at"); - * JSONObject user = js.getJSONObject("user"); - * workflow = new Workflow(this.context, js.getString("title"), - * user.getString("name"), - * js.getString("description"), - * js.getInt("id"), - * js.getString("url")); - * workflow.setWorkflowDatecreated(created_at); - * workflow.setWorkflowDatemodified(updated_at); - **/ \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-mobile/blob/b93d871c/app/src/main/java/org/apache/taverna/mobile/utils/HttpUtil.java ---------------------------------------------------------------------- diff --git a/app/src/main/java/org/apache/taverna/mobile/utils/HttpUtil.java b/app/src/main/java/org/apache/taverna/mobile/utils/HttpUtil.java deleted file mode 100644 index 0be41a3..0000000 --- a/app/src/main/java/org/apache/taverna/mobile/utils/HttpUtil.java +++ /dev/null @@ -1,108 +0,0 @@ -package org.apache.taverna.mobile.utils; - -import org.apache.http.HttpEntity; -import org.apache.http.HttpResponse; -import org.apache.http.auth.UsernamePasswordCredentials; -import org.apache.http.client.ClientProtocolException; -import org.apache.http.client.HttpClient; -import org.apache.http.client.methods.HttpGet; -import org.apache.http.impl.auth.BasicScheme; -import org.apache.http.impl.client.AbstractHttpClient; -import org.apache.http.impl.client.DefaultHttpClient; -import org.apache.http.util.EntityUtils; -import org.apache.taverna.mobile.tavernamobile.User; - -import android.util.Log; - -import java.io.IOException; -import java.net.CookieStore; -import java.net.HttpURLConnection; -/** - * Apache Taverna Mobile - * Copyright 2015 The Apache Software Foundation - * - * This product includes software developed at - * The Apache Software Foundation (http://www.apache.org/). - * - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -/** - * Created by Larry Akah on 6/18/15. - */ -public class HttpUtil { - private static final String TAG = "HttpUtil"; - - public <T> Object doPostAuthenticate() { - User muser = new User("", null); - - return muser; - } - - public <T> Object doGetRequestResponse(String uri, Class<T> classType, String username, - String password) { - Object dataObject = null; - - HttpClient httpClient = new DefaultHttpClient(); - HttpGet httpGet = new HttpGet(uri); - HttpResponse httpResponse = null; - try { - ((AbstractHttpClient) httpClient).setCookieStore((org.apache.http.client.CookieStore) - CookieStore.class.newInstance()); - httpGet.addHeader(BasicScheme.authenticate(new UsernamePasswordCredentials(username, - password), "UTF-8", false)); - httpResponse = httpClient.execute(httpGet); - - if (isSuccess(httpResponse, HttpURLConnection.HTTP_OK)) { - HttpEntity entity = httpResponse.getEntity(); - if (entity != null) { - String responseString = EntityUtils.toString(entity); - dataObject = this.deSerialize(classType, responseString); - } - } - } catch (InstantiationException e) { - Log.e(TAG, "doGetRequestResponse: ", e); - return e.getMessage(); - } catch (IllegalAccessException e) { - Log.e(TAG, "doGetRequestResponse: ", e); - return e.getMessage(); - } catch (ClientProtocolException e) { - Log.e(TAG, "doGetRequestResponse: ", e); - return e.getMessage(); - } catch (IOException e) { - Log.e(TAG, "doGetRequestResponse: ", e); - return e.getMessage(); - } - - return dataObject; - - } - - //de-serializes xml data to target class - private <T> Object deSerialize(Class<T> classType, String responseString) { - //TODO deserialize data and return the appropriate object - // ObjectInputStream ori = new ObjectInputStream(new DataInputStream(responseString)) ; - - return null; - } - - private boolean isSuccess(HttpResponse httpResponse, int httpOk) { - - return httpResponse.getStatusLine().getStatusCode() == httpOk; - } -}
