Fixing some of the formatting errors for github.

Project: http://git-wip-us.apache.org/repos/asf/incubator-usergrid/repo
Commit: 
http://git-wip-us.apache.org/repos/asf/incubator-usergrid/commit/c6bbfba9
Tree: http://git-wip-us.apache.org/repos/asf/incubator-usergrid/tree/c6bbfba9
Diff: http://git-wip-us.apache.org/repos/asf/incubator-usergrid/diff/c6bbfba9

Branch: refs/heads/USERGRID-614
Commit: c6bbfba989b806b106fe6b2e4f1744123c30c760
Parents: d557294
Author: GERey <[email protected]>
Authored: Mon May 4 10:30:37 2015 -0700
Committer: GERey <[email protected]>
Committed: Mon May 4 10:30:37 2015 -0700

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 .../usergrid/corepersistence/pipeline/README.md | 128 +++++++++----------
 1 file changed, 61 insertions(+), 67 deletions(-)
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http://git-wip-us.apache.org/repos/asf/incubator-usergrid/blob/c6bbfba9/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/README.md
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diff --git 
a/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/README.md
 
b/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/README.md
index 0e12c45..ad42612 100644
--- 
a/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/README.md
+++ 
b/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/README.md
@@ -1,7 +1,6 @@
 #IO Framework
 Based on the Pipes and Filters software pattern
 
-![Top Level Pipeline Diagram](PipelineDiagram.jpg =800x800) 
 
 
 ##How does this all work?
@@ -11,20 +10,21 @@ Consider the following example flow:
  
  1. First we start with an application. You want to do a certain set of 
operations on this application. The application gets passed into the pipeline. 
We extract the application id and pass unto the first filter
  1. The filter represents some action being done unto the application. This 
could be a "getCollection" to a "deleteIndex" action. We can have as many as we 
want. These operations will be done in the order that they are represented in 
above. The results of each of the filters will be fed into the next one for 
processing. Thus filter 1 will be done before filter 2 can be applied.
-       a. An important note here is that a cursor may or may not be generated 
here. this cursor ( if it exists ) will be stored in what is known as a 
Pipeline Context. The context contains all approriate state cursor information 
in case we need resume a query after we have run it. 
+       * An important note here is that a cursor may or may not be generated 
here. this cursor ( if it exists ) will be stored in what is known as a 
Pipeline Context. The context contains all approriate state cursor information 
in case we need resume a query after we have run it. 
  1. After we have applied all the filters, we take the results and feed them 
into a collector. The collector aggreates the results returned and pushes them 
into a ResultSet. 
  1. The result set ( along with a cursor is one was generated ) is fed into 
the PipelineResult class. The PipelineResult is returned as a observable that 
can be iterated on by the calling method.
 
-Above is the uml diagram of how the seperate modules are connected. We see 7 
core parts
-
 ###Pipeline Module
 
+![Top Level Pipeline 
Diagram](https://github.com/apache/incubator-usergrid/blob/54871b5a5647d45d25636f82a780d0d79acd6a2a/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/PipelineDiagram.jpg?raw=true
 =800x800) 
+
 1. PipelineModule
-       a. This handles all of the guice configuration for the Pipeline Module 
that we are working in. If you need to wire something do it here. 
+       
+       * This handles all of the guice configuration for the Pipeline Module 
that we are working in. If you need to wire something, do it here. 
 1. PipelineBuilderFactory
-       a. This factory is used to instantiate the ReadPipelineBuilder in 
CpEntityManager and CpRelationshipManager. This lets us use the pipeline 
outside of the pipeline module.
+       * This factory is used to instantiate the ReadPipelineBuilder in 
CpEntityManager and CpRelationshipManager. 
 1. Pipeline
-       a. The Pipeline class is where it all starts. Here we:
+       * The Pipeline class is where it all starts. Here we:
                1. Define the application scope to know what application we're 
working on
                1. What pipeline operations are going to be passed through 
                1. What type of Collector we are going to be using.
@@ -32,24 +32,19 @@ Above is the uml diagram of how the seperate modules are 
connected. We see 7 cor
                1. The limit on the number of entities we might want to get 
back from a query
                1. Where in the pipeline we are.  
        a. The ```execute``` method contains the execution of the pipeline. It 
retrieves the applications and pipes the operations from one to another until 
we run out of operations. At that point we aggregate the response into a 
collection and return an instance of PipelineResult with the results and a 
cursor.
-       a. Things that depend on the read module
-               1. The PipelineOperation
-               1. The Collector
-       a. Things that depend on the cursor module
-               1. Request and Response Cursor
 1. PipelineContext
-       a. This is a stateful representation of the current step in the 
pipeline. It contains the cusor that we want to run (requestCursor) and the 
cursor that is returned from the filter (responseCursor). 
-       a. Each filter contains a Pipeline Context due to the above reason. 
+       * This is a stateful representation of the current step in the 
pipeline. It contains the cusor that we want to run (requestCursor) and the 
cursor that is returned from the filter (responseCursor). 
+       * Each filter contains a Pipeline Context due to the above reason. 
 1. PipelineResult
-       a. Gets created in the Pipeline after the results are collected from 
the filters.
-       a. Depends on the ResponseCursor class. 
+       * Gets created in the Pipeline after the results are collected from the 
filters.
+       * Depends on the ResponseCursor class. 
 1. Cursor Module
-       a. Contains the Request and ResponseCursor classes that are directly 
instantiated in Pipeline Module.
-       a. Contains logic that represents the cursor logic
+       * Contains the Request and ResponseCursor classes that are instantiated 
in Pipeline Module.
+       * Contains logic that represents the cursor logic.
 ***
 
 ###Indepth Cursor Module Explanation
- ![Top Level Pipeline Diagram](cursor/CursorDiagram.jpg =800x800) 
+ ![Top Level Pipeline Diagram](cursor/CursorDiagram.jpg =800x800 ) 
 
 The Cursor Module is made up of 7 classes.
 
@@ -64,95 +59,94 @@ The Cursor Module is made up of 7 classes.
        b. This gets populated by either the User ( using a cursor that we've 
given them), or by the pipeline feeding the cursor into the next stage. 
        c. Could be     
                
-
- 
 ***
 ###Indepth Read Module Explanation
- ![Top Level Pipeline Diagram](read/ReadDiagram.jpg =1300x1000) 
+ ![Top Level Pipeline 
Diagram](https://github.com/apache/incubator-usergrid/blob/54871b5a5647d45d25636f82a780d0d79acd6a2a/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/read/ReadDiagram.jpg?raw=true
 =1300x1000) 
 
 1. PipelineOperation
-       a. Top class in the Pipeline because it defines what every pipeline 
operation needs to have and extend. Mandates that every class contains a 
PipelineContext
-       b. Primary interface for Filtering commands.
+       * Top class in the Pipeline because it defines what every pipeline 
operation needs to have and extend. Mandates that every class in the Pipeline 
extend this class.
+       * Primary interface for Filtering commands.
 1. CandidateResultsFilter
-       a. Is an interface
-       a. Extends PipelineOperation 
-       b. Defines the types that will be requried in the filter. While not 
visible in the diagram the CandidateResultsFilters will consist of a <Id, 
CandidateResults>.
-       c. Primary filter that will be used for interfacing with ES 
(Elasticsearch)
+       * Is an interface
+       * Extends PipelineOperation 
+       * Defines the types that will be requried in the filter. While not 
visible in the diagram the CandidateResultsFilters will consist of a <Id, 
CandidateResults>.
+       * Primary filter that will be used for interfacing with ES 
(Elasticsearch)
 1. Filter
-       a. Extends generic PipelineOperation
-       b. Primary used to interact with Graph and Entity modules
-       b. Why do we use the filter in the ReadPipeline when we could also 
interchange the Canadiate Results filter? Is it just the type that 
differentiates it. 
+       * Extends generic PipelineOperation
+       * Primary used to interact with Graph and Entity modules
+       * Why do we use the filter in the ReadPipeline when we could also 
interchange the Canadiate Results filter? Is it just the type that 
differentiates it. 
 1. AbstractSeekingFilter
-       a. This abstract filter is meant to be extended by any filter that 
requires a cursor and operations on that cursor. 
-       b. Extends from the AbstractPipelineOperation because a filter is a 
pipeline operation. 
-       c. Is used in the Graph and Elasticsearch submodules because those both 
use cursors. 
+       * This abstract filter is meant to be extended by any filter that 
requires a cursor and operations on that cursor. 
+       * Extends from the AbstractPipelineOperation because a filter is a 
pipeline operation. 
+       * Is used in the Graph and Elasticsearch submodules because those both 
use cursors. 
 1. CursorSeek
-       a. Protected internal class that lives in AbstractSeekingFilter
-       b. Whats the deal with only seeking values on the first call? Is this 
not similar to pagination? 
+       * Protected internal class that lives in AbstractSeekingFilter
+       * Whats the deal with only seeking values on the first call? Is this 
not similar to pagination? 
        
 1. Collector
-       a. Extends generic PipelineOperation
-       b. Primary used to interact with Entity and Elasticsearch Packages
-       a. The stage of our filters that is used to reduce our stream of 
results into our final output.
+       * Extends generic PipelineOperation
+       * Primary used to interact with Entity and Elasticsearch Packages
+       * Used to reduce our stream of results into our final output.
 1. CollectorState
-       a. The state that holds a singleton collector instance and what type of 
collector the Collector filter should be using. 
-       a. The collector state gets initialized with a CollectorFactory and 
then gets set with which collector it should use for the Collector object that 
it holds. 
-       b. This is a private inner class within ReadPipelineBuilderImpl
+       * The state that holds a singleton collector instance and what type of 
collector the Collector filter should be using. 
+       * The collector state gets initialized with a CollectorFactory and then 
gets set with which collector it should use for the Collector object that it 
holds. 
+       * This is a private inner class within ReadPipelineBuilderImpl
 1. Elasticsearch Module
-       a. Contains the functions we use to actual perform filtered commands 
that contain elasticsearch components.
-       b. These will typically return Canadiate Result sets that will be 
processed by the collector. 
+       * Contains the functions we use to actual perform filtered commands 
that contain elasticsearch components.
+       * These will typically return Canadiate Result sets that will be 
processed by the collector. 
 1. Entity Module
-       a. Contains a single filter that maps id's, and the collector that 
processes entity id's. 
+       * Contains a single filter that maps id's, and the collector that 
processes entity id's. 
 1. Graph Module
-       a. Contains the filters that are used to interact with the lower level 
Graph Module.
+       * Contains the filters that are used to interact with the lower level 
Graph Module.
 1. FilterFactory
-       a. Defines all of the possible read filters that can be added to a 
pipeline. 
-       b. Contain comments on what each type of filter should accomplish.  
+       * Defines all of the possible read filters that can be added to a 
pipeline. 
+       * Contain comments on what each type of filter should accomplish.  
 1. ReadPipelineBuilder 
-       a. Contains the builder interface that will assemble the underlying 
pipe along with updating and keeping track of its state. 
+       * Contains the builder interface that will assemble the underlying pipe 
along with updating and keeping track of its state. 
 1. ReadPipelineBuilderImpl
-       a. Contains the builder implementation of the ReadPipelineBuilder. 
-       b. Adds on filters from FilterFactory depending on the type of action 
we take. 
-       c. Contains execute method when the pipeline is finished building. This 
pushes results as a PipelineResult back up. 
+       * Contains the builder implementation of the ReadPipelineBuilder. 
+       * Adds on filters from FilterFactory depending on the type of action we 
take. 
+       * Contains execute method when the pipeline is finished building. This 
pushes results as a PipelineResult back up. 
        
 ***
 ###Indepth Entity Module Explanation
 The entity module only contains two classes. So I won't attach the uml diagram 
as they aren't related to each other in any way.
 
 1. EntityIdFilter
-       a. A stopgap filter that helps migrating from the service tier and its 
entities. Just makes a list of entities. 
+       * A stopgap filter that helps migrating from the service tier and its 
entities. Just makes a list of entities. 
 2. EntityLoadCollector
-       a. The EntityLoadCollector loops through entity id's and then converts 
them to our old entity model so that they can go through the service and rest 
tier. 
+       * The EntityLoadCollector loops through entity id's and then converts 
them to our old entity model so that they can go through the service and rest 
tier. 
+       
 ***
 ###Indepth Graph Module Explanation
- ![Top Level Pipeline Diagram](read/graph/GraphDiagram.jpg =800x800) 
+ ![Top Level Pipeline 
Diagram](https://github.com/apache/incubator-usergrid/blob/54871b5a5647d45d25636f82a780d0d79acd6a2a/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/read/graph/GraphDiagram.jpg?raw=true
 =800x800) 
  
  1. EdgeCursorSerializer
-       a. The serializer we use to decode and make sense of the graph cursor 
that gets returned.
+       * The serializer we use to decode and make sense of the graph cursor 
that gets returned.
  1. AbstractReadGraph(EdgeById)Filter
-       a. An abstract class that defines how we should read graph edges from 
name(id).
+       * An abstract class that defines how we should read graph edges from 
name(id).
  1. ReadGraphConnection(ById)Filter
-       a. Defines how to read Connections out of the graph using names(id).
+       * Defines how to read Connections out of the graph using names(id).
  1. ReadGraphCollection(ById)Filter
-       a. Defines how to read Collections out of the graph using names(id).
+       * Defines how to read Collections out of the graph using names(id).
+ 1. ReadGraphconnectionByTypeFilter
+       * A filter that reads graph connections by type.
 
- 2. ReadGraphconnectionByTypeFilter
-       a. A filter that reads graph connections by type.
 ***
 ###Indepth Elasticsearch Module Explanation
  
- ![Top Level Pipeline Diagram](read/elasticsearch/ElasticsearchDiagram.jpg 
=800x800) 
+ ![Top Level Pipeline 
Diagram](https://github.com/apache/incubator-usergrid/blob/54871b5a5647d45d25636f82a780d0d79acd6a2a/stack/core/src/main/java/org/apache/usergrid/corepersistence/pipeline/read/elasticsearch/Elasticsearchdiagram.jpg?raw=true
 =800x800) 
  
  1. Impl Module 
-       a. contains all the implementations and verfiers and loaders for 
elasticsearch
+       * contains all the implementations and verfiers and loaders for 
elasticsearch
  2. AbstractElasticSearchFilter
-       a. This extends into the same pattern as the Graph Module where we make 
a abstract filter so we can extend it to easily accomodate Collection or 
Connection searching.
+       * This extends into the same pattern as the Graph Module where we make 
a abstract filter so we can extend it to easily accomodate Collection or 
Connection searching.
  3. CandidateResultsEntityResultsCollector
-       a. Collects the results from Elasticsearch then retrieves them from 
cassandra and converts them from 2.0 to 1.0 entities that are suitable for 
return.
+       * Collects the results from Elasticsearch then retrieves them from 
cassandra and converts them from 2.0 to 1.0 entities that are suitable for 
return.
  4. CandidateResultsIdVerifyFilter
-       a. Filter that verifies that the canaidate results id's are correct???? 
What else does this do ? isn't that what the collector does?
+       * Filter that verifies that the canaidate results id's are correct???? 
What else does this do ? isn't that what the collector does?
  5. ElasticsearchCursorSerializer
-       a. The serializer we use to decode and make sense of the elasticsearch 
cursor.
+       * The serializer we use to decode and make sense of the elasticsearch 
cursor.
  
 
  

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