Hari Jayaram,
Thanks for reminding me of this.
Bill here is a back-port patch of the 0.5-pre code:
http://www.ysbl.york.ac.uk/~emsley/software/extras/0.4.1-src-c-interface-build.cc.patch
Please let me know if it works for you. If it does, I suppose that
means that I should make a 0.4.2. Hmmm....
Paul.
William Scott wrote:
In particular, if there is a simple way of patching 0.4.1 to fix this,
I would like to do that and keep this a fink "stable" release.
Bill
On Mar 7, 2008, at 8:18 AM, hari jayaram wrote:
Hi everyone Thanks for helping me fix the "double click" or mouse focus
issues on MAC OSX..
As Paul emailed a simple trick fixed my mouse focus issues
$ defaults write com.apple.x11 wm_ffm true
I however cannot get the refmac command to run from inisde this coot
version
0.4.1 ( revision 647)
The error is the same as reported by W.G Scott. in a previous email .
I am
of course giving it my F , SIGF .but it seems to not know where my
pdb file
is..
(safe_scheme_command) Error in proc: key: wrong-number-of-args
args: (#f Wrong number of arguments to ~A ( etc etc
My OS version :OSX 10.5.2
X11 version : 2.1
Any ideas on how to get around this ( other than running refmac
separately
of course)
Thanks for your help
Hari Jayaram
On Tue, Jan 22, 2008 at 1:52 AM, William Scott
<[EMAIL PROTECTED]>
wrote:
Hi Paul et al:
I am currently using coot 0.4.1 that I compiled.
If I load in a pdb file and its corresponding mtz file, I can use
refmac to calculate its map, and this works.
If I then try to use the "run refmac" command in the model/fit/refine
menu, I am rewarded with the following error:
Running refmac refmac params molecule number 4
DEBUG:: pdb_in_filename is now 1 coot-refmac
DEBUG:: pdb_in_filename is now 2 coot-refmac/
DEBUG:: pdb_in_filename is now 3 coot-refmac/mpr006_refine_004_refmac0-
pre.pdb
DEBUG:: mtz_out_filename: coot-refmac/mpr006_refine_004_refmac0.mtz
DEBUG:: pdb_out_filename: coot-refmac/mpr006_refine_004_refmac0.pdb
refmac ccp4i project dir
(run-refmac-by-filename "coot-refmac/mpr006_refine_004_refmac0-
pre.pdb" "coot-refmac/mpr006_refine_004_refmac0.pdb" "coot-refmac/
refmac-for-phases.mtz" "coot-refmac/mpr006_refine_004_refmac0.mtz" ""
0 0 4 1 0 '' -1 "" "/mpr08006_1/Unspecified/F_08006" "/mpr08006_1/
Unspecified/SIGIMEAN")
((safe_scheme_command) Error in proc: key: wrong-number-of-args
args: (#f Wrong number of arguments to ~A (#<procedure run-refmac-by-
filename (pdb-in-filename pdb-out-filename mtz-in-filename mtz-out-
filename extra-cif-lib-filename imol-refmac-count swap-map-colours-
post-refmac? imol-mtz-molecule show-diff-map-flag phase-combine-flag
phib-fom-pair force-n-cycles ccp4i-project-dir f-col sig-f-col . r-
free-col)>) #f))
Anyone else getting this (apart from my postdoc)?
Thanks in advance.
Bill
