Dear Coot Users, I have installed several versions of coot (0.3.3, 0.4.1 and 0.5) on Ubuntu Linux Version 8.04.1 (amd64 and i386). With each version and on each architecture the bonds are not drawn correct. Several bonds are not drawn at all so that there are objects that look like stars, which correlate with beta or gamma carbons.
I've put an image of the "Complex of Drosophila odorant binding protein LUSH with butanol" which you can easily get with the Accession Code 1ooh and an image of benzene on my webserver at http://www.crossbone.org/coot/1ooh.ppm and http://www.crossbone.org/coot/benzene.ppm so you can get a better impression of what I mean. I hope someone knows how I can solve this issue Many Thanks Willem Bleymueller
