Re: [COOT] Coot and Bond Display wrong in Linux (ubuntu)

[Kay Diederichs]

Willem Bleymueller schrieb:

Dear Coot Users,

I have installed several versions of coot (0.3.3, 0.4.1 and 0.5) on
Ubuntu Linux Version 8.04.1 (amd64 and i386).
With each version and on each architecture the bonds are not drawn
correct.
Several bonds are not drawn at all so that there are objects that look
like stars, which correlate with beta or gamma carbons.

I've put an image of the "Complex of Drosophila odorant binding protein
LUSH with butanol"
which you can easily get with the Accession Code 1ooh
and an image of benzene on my webserver at
http://www.crossbone.org/coot/1ooh.ppm

and http://www.crossbone.org/coot/benzene.ppm

so you can get a better impression of what I mean.

I hope someone knows how I can solve this issue

Many Thanks Willem Bleymueller

Willem,

without even looking at those pictures, I'd guess that you need to
unsetenv LANG
or
setenv LANG C


HTH,

Kay
--
Kay Diederichs                http://strucbio.biologie.uni-konstanz.de
email: [EMAIL PROTECTED]    Tel +49 7531 88 4049 Fax 3183
Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz

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or similar (the exact command depends on the shell you use), before running coot. The problem has to do with the different meanings of a comma (",") and a point (".") in numbers (in your PDB file, in this case ...), in different languages.

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