I guess you didnt give it a chain id. When sequencing the closest fragment this information is required (maybe it shouldnt, or at least it should give the appropriate warning - I will look into it at some point).
B > I'm trying to understand the Extensions-> Dock sequence dialogue. > How > does it work? > > I've tried > > Place helix here > Select Dock Sequence > choose Helix molecule > Load sequence from a file > click "Sequence closest fragment" > > then I get > > assign-sequence-from-file 2 "/Users/pre/Documents/Talks/ > Crystallography/LMB-2009/MapFitting/Examples/amph2.seq") > iv: 0 seq.size: 1 > debug pythoning and > MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDSAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDLWEPTESQAGVLPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGTQEPGETAASEATSSSLPAVVVETFSATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ > apply the sequence info here > > then cootaneer > > ERROR:: the input contains an invalid chain and/or sequence > BL ERROR:: something went wrong assigning the sequence > > > > What should I have done? (Coot 0.6-pre 1 1941, OSX) > > Best wishes > Phil >
