Hi ,
I am seeing this problem only on a particular 32 bit machine.
On this machine when I try to make a map using a Dano column and PHIC or
PHIDM , coot chugs through the calculation. Creates the map object in
Display manager and then no map shows up. Despite any extent of attempting
to scroll the map the sigma gets reported as "nan".
All dialogs alkso have the map sigma as "nan"
I know there is nothing wrong with the mtz file as the same file works on
all other machines running coot regardless of version number . The fft from
mtz does not have any problems making FWT maps , only Dano maps give this
strange behavior.
Any ideas how to fix this
Thanks for your help
Hari
The command it hiccups on is
(make-and-draw-map-with-reso-with-refmac-params
"/home/yilingf/Desktop/cootbuild/cootbuild/caded-hg2ph-80_dmmulti3-32_4.mtz"
"/unknownrenamed/unknown100409:11:15:15/DANO_Se32-4"
"/HKL_base/HKL_base/PHI_madsad" "" 0 0 1
"/unknown/unknown100409:04:37:39/F_hg2" "" "/HKL_base/HKL_base/FreeR_flag" 1
1 0 -1.00 -1.00)
^Cmaking conventional map from MTZ filename
/home/yilingf/Desktop/cootbuild/cootbuild/caded-hg2ph-80_dmmulti3-32_4.mtz
using /unknownrenamed/unknown100409:11:15:15/DANO_Se32-4
/HKL_base/HKL_base/PHI_madsad
CCP4MTZfile: Mtz column type mismatch: DANO_Se32-4 D-F
Number of OBSERVED reflections: 53182
INFO:: finding ASU unique map points with sampling rate 1.5
INFO grid sampling...Nuvw = ( 84, 108, 162)
INFO:: 0.262 seconds to read MTZ file
INFO:: 0.027 seconds to initialize map
INFO:: 12.616 seconds for FFT
INFO:: 1.389 seconds for statistics
Map mean: ........ nan
Map sigma: ....... nan
Map maximum: ..... -1e+10
Map minimum: ..... 1e+10
INFO:: 0.059 seconds for contour map
INFO:: 14.353 seconds in total
INFO:: Stored refmac parameters: /unknown/unknown100409:04:37:39/F_hg2
/HKL_base/HKL_base/FreeR_flag is sensible.
(make-and-draw-map-with-reso-with-refmac-params
"/home/yilingf/Desktop/cootbuild/cootbuild/caded-hg2ph-80_dmmulti3-32_4.mtz"
"/unknownrenamed/unknown100409:11:15:15/DANO_Se32-4"
"/HKL_base/HKL_base/PHI_madsad" "" 0 0 1
"/unknown/unknown100409:04:37:39/F_hg2" "" "/HKL_base/HKL_base/FreeR_flag" 1
1 0 -1.00 -1.00)
(graphics-molecule-bond-type 2)
