Hi everybody,
Using the revision 2283 on 10.5, I am seeing this whenever I am closing
the application:
/sw/bin/coot: line 5: 19785 Segmentation fault /sw/bin/coot-real "$@"
Yep, coot shuts down with a segmentation fault. I haven't tested most
functionality and it has not affected my use of coot yet, but I assumed
it might help to report it. This seems to be the same bug observed by
Christian on a 10.4 machine, because I get the similar Preferences
crash. Empty 0-coot.state.scm is also probably due to the crash during
exiting.
Engin
On 9/8/09 7:14 AM, William G. Scott wrote:
Hi Christian:
I just committed coot 0.6-pre-1-revision-2283 to fink cvs. It fixes a
bug on 64-bit where the menu would freeze when superposition is
invoked. I suppose there is a 0.0000001 chance that it fixes the
other problem too. I have no way to test on 10.5 intel (I still have
10.6) and haven't had direct access to 10.4 for a long time. This
could be a problem with coot or with one of many of its ca. 230
dependencies.
From what I have read, you can upgrade directly to SL (US $30, UK
£25), despite the propaganda on the box. I have ccp4 and coot and the
other crystallographic fink things running all in 64-bit now. I'm
hoping these will now pass the 70S ribosome test.
I hope this works in the meantime.
Bill
On Sep 8, 2009, at 5:08 AM, Christian Benda wrote:
Dear all,
we have updated coot to 0.6-pre-1 revision 2264 using fink on our
Macs running 10.4.11
to be able to use zalman stereo.
Unfortunately it seems like this coot or the combination is not
working correctly. So far,
there are two main issues:
1. coot freezes and closes down after selecting e.g. the preferences
menue
2. coot writes an empty 0-coot.state.scm file no matter what's loaded
into coot.
Any hints to what we can do? We really need the stereo and therefore
revision 2225 or
higher
Many thanks in advance
Christian
Dr. Christian Benda
Max Planck Institute of Biochemistry
Structural Cell Biology
Am Klopferspitz 18
D-82152 Martinsried
Germany
Phone: +49 (0)89 85 78 23 37
Fax: +49 (0)89 85 78 22 19
Email: be...@biochem.mpg.de
--
Engin Özkan
Post-doctoral Scholar
Laboratory of K. Christopher Garcia
Howard Hughes Medical Institute
Dept of Molecular and Cellular Physiology
279 Campus Drive, Beckman Center B173
Stanford School of Medicine
Stanford, CA 94305
ph: (650)-498-7111
