Hi, I am trying to refine a covalently bound ligand using CNS and coot. The ligand forms a disulfide bond with the active site Cys residue. I am unable to see the bond with coot, but I can see it with pymol. I know I need the .cif files for the restraints to refine the ligand but do I need the dictionary file to see this covalent bond in coot? If so, where and how do I input the dictionary file in coot and CNS (generate files?) for refinement?
Thanks, Baldeep
