Katarina M wrote:
> Hi all,
> I am running coot version 0.6 pre on Mac OS X 10.5.8. Everything was working fine upon
> installation for couple of months and all of the sudden after trying to real space refine a
> residue funny looking dots would appear around it (as is shown in the attached photo). It
> appears that these dots are somehow showing the interaction with the neighboring residue
> or water molecules.
> Could anybody help me with turning off this feature?
>
They are probe dots. Presumably you installed it or molprobity and coot
started using it.
Somewhere you have set:
(set-do-probe-dots-post-refine 1)
so you could try finding that and commenting it out or simply add
(set-do-probe-dots-post-refine 0)
to the end of your ~/.coot file.
Re: the image, I would be tempted to move the CG and NZ to the left
somewhat, and the CD, CE to the right.
Paul
