That doesn't work in my OSX coot (maybe an oldish version 3072), no button
appears
The simpler command doe:s
coot_toolbar_button("Sphere Refine", "sphere_refine(5.0)", "reset-view.svg")
Phil
On 19 Nov 2010, at 08:26, Bernhard Lohkamp wrote:
>
>>>> also is there any way of refining a zone around a metal ion without the
>>>> sidechains vanishing into the metal density? I know the refine-by-sphere
>>>> ("R") option works better, but then I have no control over what I'm
>>>> refining
>>>>
>>>
>>> Sphere refine is simply a thin layer around the refine-residues function
>>> which takes a list of residue specs - that gives you enough control, I
>>> hope. (You can also trivially change the "radius" in sphere refine.)
>>>
>>> Paul.
>>
>>
>> How do you change the radius?
>
> The pythonic function sphere_refine takes an optional argument which is the
> radius (default is 3.5A). If you have the sphere refine function as a
> toolbutton (which I believe you have now) you can change the function in your
> toolbuttons file ($HOME/.coot-preferences/coot_toolbuttons.py) to say e.g.
> for radius 5A:
>
> coot_toolbar_button("Sphere Refine", "sphere_refine(5.0)",
> icon_name="reset-view.svg", tooltip="RSR around active residue")
>
> Does this help?
>
> B
>
> --
> ***************************************************
>
> Dr. Bernhard Lohkamp
> Assistant Professor
> Div. Molecular Structural Biology
> Dept. of Medical Biochemistry and Biophysics (MBB)
> Karolinska Institutet
> S-17177 Stockholm
> Sweden
>
> phone: (+46) 08-52487651
> fax: (+46) 08-327626
> email: [email protected]
