? eg if "Number" = 4, then there might be 2 picked residues on either end of the loop to assume are more-or-less correct (even if not fixed)?
On 30 Jan 2012, at 16:03, Judit Debreczeni wrote: > On 30 January 2012 14:47, Phil Evans <[email protected]> wrote: >> Can someone explain Extensions->Modelling->DB Loop or point to documentation >> (I've tried Google)? What are "Number of residues for basis"? >> >> Phil > > Assume we have a missing loop that we would like to get built. The > conformation of the newly built loop candidates will depend on the > residues we have already modeled on both sides of the gap. My > understanding is that residues picked for basis (i.e. residues already > modeled) will be included in the search and used as starting points > for the new loop (and not just treated as "correct"). > > J.
