On 05/03/12 15:10, Sheriff, Steven wrote:
It appears to me that you have provided the Python rather than the Scheme
version of this command, at least based on the use of underscores rather than
dashes and the fact that the entire command is not in parentheses as opposed to
just the parameter. Are you switching entirely to Python?
No. Perish the thought :-)
My understanding was that Ian Tickle was using the (Python-only) WinCoot
so I did the translation.
[No problem from my end, just curious.] Or was this an oversight? Would the
Scheme version be:
(set-nomenclature-errors-on-read "ignore") ?
Exactly so.
Also, I have noticed when reading certain RCSB/PDB files that the Fix
Nomenclature Errors pop-up often questions a few residues. I thought the RCSB
(and associated centers) fixed these sorts of errors, so I am concerned about
why COOT picks up occasional residues as having nomenclature errors. Any
thoughts?
I too see this and I too thought the same (about wwPDB). I have on
occasion by hand re-checked the problems about which Coot complains and
have found them (AFAICS) to be correctly flagged.
Paul.
