On 21/03/12 22:02, Ed Pozharski wrote:
When using "Fit protein" extension the memory consumption by coot goes
steadily up. On 200 aa protein the memory consumption by coot just went
up from 120Mb to 320Mb. Stepped refine adds another 40Mb but
immediately and it does not grow as the refinement goes through the
sequence. I noticed this when trying this on a structure with ~3000 aa
in the asymmetric unit - it quickly ate all of the 4Gb available on this
machine and essentially stalled the computer as it started swapping
furiously. Obvious workaround is to break the model into smaller
chunks, but it still feels like a bug.
This is on svn3713.
Certainly sounds like a bug.
I'll give fit protein a bash on a big structure.
Cheers,
Paul.
