On 15/03/13 16:39, Ed Pozharski wrote:
Say I have 5bp long stretch of double helix DNA that I want to dock into
the density manually.  Rotate/translate zone does not work, presumably
because the fragment is made of two chains.  I can get around this by
renumbering one of the strands and then renaming it all as one chain,
but boy this is an ugly workaround.  I suspect I am missing something
simple  - is there an option to, say, move the whole molecule or a zone
that spans multiple chains?

I would use

Rotate/Translate -> By Molecule...

(the arrow is a toolbar togglebutton menu extension)

Does that help?

Regards,

Paul.

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