On 31/12/13 01:32, Paul Emsley wrote:


to check for a matching chain, but the output of align_to_closest_chain() is either 0 or 1.

The matching chain id is present in the console output, but I haven’t yet figured out how to parse that and do anything useful with it - the console output does not seem be easily accessible via either stdout or stderr (was hoping I could redirect the console output to a file and grep it for the chain id - ugly but I don’t know a better way).

OK, that's a good point.

So the policy is that interesting variables/values should be returned by functions. In this case it would be good to know the selected chain-id, but you don't get that - so that's a problem. I'll fix that now. In future this function will return False or the molecule number and chain-id.



OK, look out for revision 4867.

Regards,

Paul.

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