Hello,
Back from my travels (for the moment at least).
Yes, I agree with Tim. I think that you want Edit Chi Angles (rather
than rotamers).
Paul.
On 21/06/14 14:20, Tim Gruene wrote:
Dear Wai,
Coot allows to rotate groups about bonds. This way you should be able to
modify the pSer into any desired conformation.
Regards,
Tim
On 06/21/2014 12:49 PM, Yu Wai Chen wrote:
Dear Coot gurus,
I am trying to build a model (i.e. no experimental density) of a
phosphoserine residue. I used "Extensions->Phosphorylate this residue"
and got a nice pSer as expected but with some clash with nearly atoms.
My question is if I can use some of the PTM rotamer library (e.g.
SwissSidechain) to select a rotamer?
Last time (a month ago in May) I tried this, after "Phosphorylate this
residue", I remember I was presented with one rotamer which I can use
the mouse to scan among a pool of rotamers and I can pick one which
avoids steric clashes. But when I am trying to do it now, I cannot
replicate this. I am only presented with one single refined rotamer. I
have been using the same version of Coot (0.7.X).
Thanks for your help.
Wai
