Hi, I am using the coot 0.8-pre (revision 5201) version and having problems with my ligand cif files. My ligand is just a common NADP and the atom names at the PDB file match the atom names at the cif file, but for some reason I am not able to do any real space refinement ect. at coot for it since the coot fails to match (to the dictionary) the following model atom names and it would cause exploding atoms. I have tried to change my NADP to different molecules downloaded form PDB or just searching with the three letter code from the dictionary of coot, but having trouble with any molecule used. There’s also this persistent clash in the middle of the NADP molecule on both sides of the phosphorous next to the ribose ring.
I’m getting despered. Would you have any ideas? Best regards, Helena
