Dear Paul,
Thanks for the reply.
I downloaded the binaries from coot official website only.
I think I have to link the monomer library to coot after installation for
it's proper functioning.
When I tried to load "GOL" from drop down menu (File --> Get Monomer) of
coot It returned the following error.
(command-in-path? libcheck-exe)
Refmac monomer Code: GOL
(monomer-molecule-from-3-let-code "GOL" "")
run-command-in-dir args: "coot-ccp4/" "libcheck" () ("N" "MON GOL" "")
"coot-libcheck-GOL.log" #t
:
: --- LIBCHECK --- /Vers 5.2.01 ; 10.04.2013/
:
:
: Do you want to have FILE-DOCUMENT /libcheck.doc/ ? /<N>/Y/A :
: N - means without DOC-file
: Y - with new contents
: A - means to keep old contents and add new information
: with DOC-file program creates batch file: libcheck.bat
: _DOC:
:
: #
: # Keywords:
: #
: #FILE_L: < > - additional library, " " means without this file
: #MON: < > - give info about this monomer
: # if = * , give list all monomers in the library
: #FILE_PDB: < > - input PDB_file ," " means without this file
: #FILE_SMILE: < > - input SMILE_file ," " means without this fil e
: #FILE_SDF: < > - input SDF file, " " means without this file
: #FILE_MOL: < > - input MOL (sybil), SDF, ODB (O) files
: # use keyword MON as compound_id
: #FILE_CIF: < > - input CIFile ," " means without this file
: #FILE_CSD: < > - input CSD CIFile," " means without this file
: #HFLAG: <Y>/A/N - Y - hydrogen atoms where they are
: # A - with all hydrogen atoms
: # N - without hydrogen atoms
: #IND: <N>/Y - Y - create index of mon_lib.cif
: # output file: "new_mon_lib_ind.cif"
: #FILE_O: <libcheck > - output files /library,coords,ps/, name without
: # extention
: #FILE_L2: < > - additional library (FILE_L) will be added to this
library
: # in this case program performs only adding
: #ANGLE: <0.0> - rotation angle for picture ( around X )
: #LIST: <M>/S/L - S short output, L - long, M - medium
: #REF: <Y>/S,N,0 - 0 no refinement of new monomer
: # N only crd->ang and ang->crd
: # S plus torsion ref, Y plus restr.ref
: #
: #TEST: <0> - for program testing only
: #COOR: <N>/Y - use Vobs from coords instead Videal
: #LCOOR: <Y>/N - Y use coords from lib description
: #NODIST: <N>/Y - Y not read the distributed library
: # (only with FILE_L)
: #SRCH: <N>/Y/0 - Y - global search, 0 - for MON from PDB_file
: # (only with NODIST = N)
:
: #--- type "keyword parameters" and/or ---
: #--- press key "CR" to run program ---
: --> --> MON : GOL
: -------------
: -------------
: Keywords:
: HFLAG : Y
: COOR : N
: LCOOR : Y
: SRCH : N
: REF : Y
: NODIST: N
: ERROR: can't open "ener_lib.cif"
: ERROR: can"t open (lib) list/mon_lib_list
INFO:: libcheck status: 0
libcheck failed to write the output cif file "coot-ccp4/libcheck_GOL.cif" .
(get-monomer "GOL")
Please help me in solving this issue.
Thanks,
Vijay
On 23 September 2014 23:56, Paul Emsley <[email protected]> wrote:
> On 23/09/14 19:12, Vijaykumar Pillalamarri wrote:
>
>> Dear all,
>>
>> I have recently installed COOT 0.7.1. When I tried to load monomers (like
>> Glycerol), nothing is loaded onto the GUI. Do we have to link monomer
>> library to COOT to be able to load monomers on COOT? if so, please help me
>> to get monomer library and to link the library to COOT.
>>
>> If the above case is not true, please help me to solve the problem.
>>
>>
> Using binaries from my web site, it should just work.
>
> To help address the problem, you should report where you got the binary
> from, what buttons you pressed on the GUI and what coot says in the
> terminal.
>
> Paul.
