Hi all, Just a couple of minor bugs to report in Coot 0.8 (stable) and subsequent nightlies.
First, very minor, the "Jone's Rainbow" representation option seems to be treating all residues (including waters) as part of the range to be colored by spectral coloring, rather than just the connected protein residues in a chain, leading to low contrast (rather than N red and C blue, N is now blue and C is green, depending on the number of extra waters etc): Here is a comparison of the coloring of 3CH3 in 0.7.2 vs 0.8.1-pre: 0.7.2: https://www.dropbox.com/s/w42a40pdxi0zt4w/072_rainbow.png?dl=0 0.8.1-pre: https://www.dropbox.com/s/8wsqzr9puaoskqm/081_rainbow.png?dl=0 Also, sort_residues() doesn't seem to be working anymore. I use this function in some custom scripts, and it now seems to be only working sporadically - see this version of 3CH3 (https://www.dropbox.com/s/1m5a835ypank0n5/3ch3_sorted.pdb?dl=0) in which I added (using add_terminal_residue_using_phi_psi()) a residue to the N-terminus, then sorted the residues - the residue is still at the end of the file, whereas in prior versions (before the release of the 0.8 stable version) it was sorted into the correct location. Many thanks, Oliver.
